Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20arachidis_20[genbank_20GCA_5F001013415.1_202015-05-26] 130,300 sequences; 87,617,276 total letters Query= NC_020851.1 Length=208007 Score E Sequences producing significant alignments: (Bits) Value seq27421 232 9e-56 seq50444 214 2e-50 seq57763 127 3e-24 seq70467 87.8 2e-12 >seq27421 Length=7303 Score = 232 bits (256), Expect = 9e-56 Identities = 545/805 (68%), Gaps = 57/805 (7%) Strand=Plus/Minus Query 47757 CTCAACAAACTGACGGACAGAATATTGATTTCCTGTGGCAATAACAAAATCATCAGGTTC 47816 || || ||||| ||| || ||||||| || || ||||| ||||| || || || | Sbjct 1924 CTGAATAAACTCACGAACGCTATATTGAACACCCGTCGCAATCACAAAGTCTTCTGGCTG 1865 Query 47817 TTCTTGTTGAAGCATTAACCACATAGCCTC--GACATAATCTCTGGCATGTCCCCAGTCA 47874 |||||||| ||||| | ||| | || | |||||||||| | || |||||||| || Sbjct 1864 CTCTTGTTGCAGCATCATCCA--TTGCATTTTGACATAATCTTTAGCGTGTCCCCAATCT 1807 Query 47875 CGAAGTGCATCAAGATTTCCTAGATATAAA-CAGTCTTGCTTACCTTCAG--AGATT-GC 47930 || |||||||| | || || | ||| | | || || |||| | | ||| || Sbjct 1806 CGCAGTGCATCCATGTTGCCCATATAGATTGCTGT-TTCAAGGCCTTGGGCAATATTCGC 1748 Query 47931 TTTTAATGCT-CTTGTAATCTTACGAGTTACAAAAGTTTCACCACGTCTTGGAGATTCAT 47989 |||| | |||||| || || |||||||| ||||| ||||| | |||||||||| Sbjct 1747 C----ATGCCACGTGTAATTTTGCGCGTTACAAATGTTTCGCCACGACGCGGAGATTCAT 1692 Query 47990 GATTAAAAAGAATACCACTACAGGCATACATTCCGTATGATTCACGATAGTTCTTTACTA 48049 | || || | || ||| |||| |||||||| || || | |||||||||||| | | || Sbjct 1691 GGTTGAATAAGATCCCATTACACGCATACATACCATAAGCTTCACGATAGTT-TACAGTA 1633 Query 48050 -TCCAGTACCCATAGAGTTTTGCAACACCATAAGGAGAACGTGGATAGAAAGGTGTGGTC 48108 ||||||| |||| | |||||| ||| |||||||| |||||| || || || || || Sbjct 1632 ATCCAGTATGCATACATTTTTGCTACAGCATAAGGACTACGTGGGTAAAATGGCGTAGTT 1573 Query 48109 TCTGTCTGTGGAGTCTCTTGCACCTTACCATAAAGTTCACTGGTGGATGCTTGATAGA-T 48167 ||| | |||||| | || || ||| ||||||||||||| || || || ||||| | | Sbjct 1572 TCTTTTTGTGGAATTTCCTGAACCAAACCATAAAGTTCAGACGTTGAAGCCTGATAAAAT 1513 Query 48168 ACGAACCCTATCTTCCATCTCAAGCAAACGGACTGCCTCAAGCACTCTCAGGGTGCCTAT 48227 | | | || ||| |||| || |||| || || | | | || ||||| || Sbjct 1512 TTGGTTTTTTTAGTCAATC-CAAGGAATCGGATAGCTTCTAATAAACGAAGAGTGCCAAT 1454 Query 48228 GGCATCTG--TCTGACCAGTATACTCGGGCATCTCAAACGAAACCTTTACATGACTCTGT 48285 ||||| |||| ||||||| || || |||||| || || || |||| Sbjct 1453 AGCATCAACATCTG--CAGTATATTCAGGAGCCTCAAAACTTACTGCAACGTGTGACTGT 1396 Query 48286 GC-CCCAAGATTATAAATCTCATCTGGTTGAACCTGCTGA----ATAACCCTCACTAAAT 48340 || |||||| ||||| | ||||||||||| | || |||| ||| || | | Sbjct 1395 GCACCCAAG-TTATACACTTCATCTGGTTGGA-CTTCTGAAAGGATACGAGTC---AGGT 1341 Query 48341 TTGTAGAGTCTGTTAAGTCTCCATAATGCAATTTTAATT------------------GAT 48382 ||| | ||| || || || |||||||| ||||| || | ||| Sbjct 1340 TTGAGGTGTCGGTCAAATCACCATAATGTAATTTAAAGTTAACATTTTTTTCATGCGGAT 1281 Query 48383 C-----ATAAATGTGATCAATTCTATGTGTATTAATTAAAGAAGCCCGACGGACAATACC 48437 | ||||| || || || | ||||| |||| | || | ||||| ||||| Sbjct 1280 CCTGGTATAAA--TGGTCGATACGCTGTGTGTTAAATTGTGATGAACGACGTTTTATACC 1223 Query 48438 ATGAACCTCATACCCCTTTTCAAGAAGAAGTTCTGCTAAGTATGAACCATCTTGTCCTGT 48497 ||| || ||||| || || ||||| |||| |||||| | ||| |||||||| ||||| || Sbjct 1222 ATGTACTTCATAGCCTTTCTCAAGCAGAAATTCTGCAAGGTAAGAACCATCCTGTCCAGT 1163 Query 48498 AATACCAGTGATTAAAGCAACTTTC 48522 | ||| || ||||||||||||||| Sbjct 1162 CACACCCGTTATTAAAGCAACTTTC 1138 >seq50444 Length=3642 Score = 214 bits (236), Expect = 2e-50 Identities = 515/767 (67%), Gaps = 43/767 (6%) Strand=Plus/Plus Query 47788 CCTGTGGCAATAACAAAATCATCAGGTTCTTCTTGTTGAAGCATTAACCACATAGCCTCG 47847 || || ||||||||||| || ||||| ||| || || ||||| | |||| | Sbjct 593 CCCGTTGCAATAACAAAGTCCTCAGGCGTTTCCTGCTGCAGCATCATCCACTGCATTTTT 652 Query 47848 ACATAATCTCTGGCATGTCCCCAGTCACGAAGTGCATCAAGATTTCCTAGATATAAAC-A 47906 ||||||||| | ||||| ||||| || || |||||||| | || || | ||| | | Sbjct 653 ACATAATCTTTTGCATGGCCCCAATCGCGGAGTGCATCCATGTTGCCCATATAGAGCGTA 712 Query 47907 GTCTTGCTTACCTTCAG--AGATTGCTTTTAATGCTCTTGTAATCTTACGAGTTACAAAA 47964 || | | |||| || | ||| || | | ||| || ||||| ||||| ||| Sbjct 713 GTTTCAAGT-CCTTGAGCAATATTCGCCATAC--CACGTGTGATTTTACGTGTTACGAAA 769 Query 47965 GTTTCACCACGTCTTGGAGATTCATGATTAAAAAGAATACCACTACAGGCATACATTCCG 48024 ||||| ||||| | ||||||||| |||||||| | ||| || ||||||||||||||||| Sbjct 770 GTTTCGCCACGGCGTGGAGATTCGTGATTAAACAAAATCCCGTTACAGGCATACATTCCG 829 Query 48025 TATGATTCACGATAGTT--CTTTACTATCCAGTACCCATAGAGTTTTGCAACACCATAAG 48082 || ||||| |||||||| | || |||||||| |||| | ||| || ||| |||||| Sbjct 830 TAAGATTCGCGATAGTTGACGGTA--ATCCAGTATGCATACATTTTAGCCACAGCATAAG 887 Query 48083 GAGAACGTGGATAGAAAGGTGTGGTCTCTGTCTGTGGAGTCTCTTGCACCTTACCATAAA 48142 | ||||| ||||| ||||| || ||| | || || ||||||||||| |||||||| Sbjct 888 GGCTGCGTGGGTAGAATGGTGTCGTTTCTTTTTGGGGTATCTCTTGCACCAGACCATAAA 947 Query 48143 GTTCACTGGTGGATGCTTGATAGATACGAACCCTATCT--TCCATCTCAAGCAAACGGAC 48200 ||||| ||| ||||||||||| | | | | | | | | | | || || | || Sbjct 948 GTTCAGAGGTTGATGCTTGATA-AAATTTAGTTTTTTTAGTTAAAC-CCAGAAATCTGAT 1005 Query 48201 TGCCTCAAGCACTCTCAGGGTGCCTATGGCATC--TGTCTGACCAGTATACTCGGGCATC 48258 || || | || | ||| || || |||||||| |||| | || || || ||| Sbjct 1006 CGCTTCTAACAGACGCAGAGTACCGATGGCATCAACATCTG--CTGTGTATTCTGGCGAT 1063 Query 48259 TCAAACGAAACCTTTACATGACTCTGTGCCCCAAGATTATAAATCTCATCTGGTTGAACC 48318 || || ||| ||| ||| || || || | ||||| | ||| || ||||| | | Sbjct 1064 TCGAAACTTACCGCTACGTGAGATTGCGCGCCTAAGTTATAGACCTCGTCAGGTTGTA-C 1122 Query 48319 TGCTGAA--TAACCCTCACTAAATTTGTAGAGTCTGTTAAGTCTCCATAATGCAATTTTA 48376 | | ||| | | | | ||||| | || || || || || || ||||| || || | Sbjct 1123 TTCAGAAAGGATACGTGTC-AAATTCGAAGTATCGGTCAAATCACCGTAATGTAACTTGA 1181 Query 48377 A------------------TTGATC---ATAAATGTGATCAATTCTATGTGTATTAATTA 48415 | | |||| || | ||| ||||| | |||||||||| | Sbjct 1182 AATTAACATTTTTTTCGTGTGGATCCTGGTACAGGTGGTCAATACGTTGTGTATTAAATT 1241 Query 48416 AAGAAGCCCGACGGACAATACCATGAACCTCATACCCCTTTTCAAGAAGAAGTTCTGCTA 48475 || | ||||| || |||||||| || || || || ||||| |||| || || | Sbjct 1242 GTGATGAACGACGTTTGATTCCATGAACTTCGTAGCCTTTCTCAAGTAGAAACTCAGCCA 1301 Query 48476 AGTATGAACCATCTTGTCCTGTAATACCAGTGATTAAAGCAACTTTC 48522 ||||||||||| ||||| || | || || ||||||||||||||| Sbjct 1302 GATATGAACCATCCTGTCCAGTCACGCCCGTTATTAAAGCAACTTTC 1348 >seq57763 Length=521 Score = 127 bits (140), Expect = 3e-24 Identities = 144/193 (75%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 47980 GGAGATTCATGATTAAAAAGAATACCACTACAGGCATACATTCCGTATGATTCACGATAG 48039 || ||||||||||| || ||||| || |||||| | || || || || ||||||||| Sbjct 254 GGCGATTCATGATTGAAGAGAATCCCGGAGCAGGCAAAAATACCATAGGACTCACGATAG 313 Query 48040 TTCTTTACTATCCAGTACCCATAGAGTTTTGCAACACCATAAGGAGAACGTGGATAGAAA 48099 || | ||||||| | ||||||||||||| |||||||||||| ||| |||||||| Sbjct 314 TTTATCGTCATCCAGTGCGCATAGAGTTTTGCCACACCATAAGGACTACGCGGATAGAAG 373 Query 48100 GGTGTGGTCTCTGTCTGTGGAGTCTCTTGCACCTTACCATAAAGTTCACTGGTGGATGCT 48159 || || | |||| ||||||| | || || ||||||||| | | || ||| || || Sbjct 374 GGCGTTGACTCTTTCTGTGGGATTTCCTGAACCTTACCAAACATCTCCGAGGTAGAGGCC 433 Query 48160 TGATAGATACGAA 48172 || || | ||||| Sbjct 434 TGGTAAAAACGAA 446 >seq70467 Length=697 Score = 87.8 bits (96), Expect = 2e-12 Identities = 140/198 (71%), Gaps = 5/198 (3%) Strand=Plus/Plus Query 47971 CCACGTCTTGGAGATTCATGATTAAAAAGAATACCACTACAGGCATACATTCCGTATGAT 48030 || || | ||| || || || || || |||||||| || || |||| || | Sbjct 417 CCGCGGCGTGGGGACTCGTGGTTGAACAGAATACCGGAGCAAGCGAACATATCGAAGCTC 476 Query 48031 TCACGATAGTT--CTTTACTATCCAGTACCCATAGAGTTTTGCAACACCATAAGGAGAAC 48088 ||||||||||| | || ||||||| || || || || || ||||| ||||| || Sbjct 477 TCACGATAGTTAACGGTA--ATCCAGTGACCGTACAGCTTCGCTACACCGTAAGGGCTAC 534 Query 48089 GTGGATAGAAAGGTGTGGTCTCTGTCTGTGGAGTCTCTTGCACCTTACCATAAAGTTCAC 48148 ||||||| || ||||| || || | || ||| || |||| || ||||| | | |||| Sbjct 535 GTGGATAAAATGGTGTTGT-TCGCTTTGCGGAATCGCTTGGACTTTACCGAACATCTCAC 593 Query 48149 TGGTGGATGCTTGATAGA 48166 || ||||||||||||||| Sbjct 594 TGCTGGATGCTTGATAGA 611 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 664410475996000