Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20arachidis_20[genbank_20GCA_5F001013415.1_202015-05-26] 130,300 sequences; 87,617,276 total letters Query= NC_020863.1 Length=129155 Score E Sequences producing significant alignments: (Bits) Value seq27013 125 6e-24 seq79536 98.7 8e-16 seq42267 86.0 5e-12 >seq27013 Length=32742 Score = 125 bits (138), Expect = 6e-24 Identities = 269/395 (68%), Gaps = 9/395 (2%) Strand=Plus/Minus Query 54264 TAAGTATCAATAGGTAACCAACCTTCTGGGTATTTTGTTTTATCTATCCAACCAGCAACC 54323 ||||||||||| ||||||||||| || |||| ||||||| |||||| |||| || Sbjct 12214 TAAGTATCAATCGGTAACCAACCATCAACCCATTTGGTTTTATGCATCCAATCAGCCACA 12155 Query 54324 CCTTTCTCTTTAGCTAAACGTA-AGCTGGCTTTGTGTAGATAATAGCTGTGCATCTCTGC 54382 || || || || ||||| || | || | || ||| ||| | ||| ||| |||||| Sbjct 12154 CCCTTTTCCTTGGCTAAGCGCAGAGAT-GCCTTGGCTAGGTGGTAGTAGTGAGACTCTGC 12096 Query 54383 AAGTTTATGCATGTAATTCTTACCTTCCAGAGTTTGGTAGCTCAACTCTTTTGAAGCTAA 54442 | || |||||| | || |||| ||| | |||||| | | | |||||| | Sbjct 12095 CAATTCATGCATTAGCTGTTTGCCTTTTTGAGATGAGTAGCTTTCCCCCTCTGAAGCAAG 12036 Query 54443 GTCATGTGCAAGGTTTGTGATACCCACACCTACACTTCTTCGGTTTTTTGCTG-AATGT- 54500 || || || ||||| || || |||||||| | | | || ||||| |||| ||| | Sbjct 12035 GTAGTGAGCCAGGTTAGTAATTCCCACACCAATAGAACGTCTCTTTTTAGCTGTAATCTC 11976 Query 54501 TCCAAGCAAGGAAAAGCGTAATCCATCAAGGAGATCACATTATCAATCGCCAACAATGTA 54560 | || | |||| |||||||| ||| ||||||||||| ||| | |||| Sbjct 11975 TGTGTGCTTG--AAAGGATAATCCATGAAGTCAATCACATTATCGATCAAAAGGGCTGTA 11918 Query 54561 TAATAAGCAACATCTTCATACTCATCTTCTGACACTCTTCCAGCTACAATGGAACTTAAG 54620 |||||||| ||||| |||| || |||| | ||| | ||| || || || ||| ||| Sbjct 11917 TAATAAGCTACATCCGCATATTCTTCTTTTTTCACACGTCCGGCAACGATTGAAGCCAAG 11858 Query 54621 AAGCATAGTGCAATTTCT---CCTTGAACATTTTC 54652 ||||| || || | ||| ||| || |||||| Sbjct 11857 AAGCAAAGAGCCAACTCTGAGTCTTCAATATTTTC 11823 >seq79536 Length=725 Score = 98.7 bits (108), Expect = 8e-16 Identities = 144/203 (71%), Gaps = 2/203 (1%) Strand=Plus/Minus Query 86424 AAAAACAGGAAAGGTGGTAATCTAAAATTTACCCACTTGGAGCATGAAAAAGACGCTGAG 86483 ||||||| |||||||| | ||||||| || ||||| || | ||| || ||||| Sbjct 608 AAAAACA--AAAGGTGGCACATTAAAATTCACTCACTTAGAAAACGAAGGTGATGCTGAA 551 Query 86484 GGTAACCACCAAGGCCTCCAATACTCTTTCATAGGTTTTGATGAACTGACCCACTTCACC 86543 ||||||||||| || | || || || | || | ||||||||||| || || || | Sbjct 550 GGTAACCACCAGGGTTTGCAGTATTCAATGATCGCCTTTGATGAACTTACACATTTTTCA 491 Query 86544 CTCTCCCAGTTTTTATATTTGATAGGACGTATGCGTTCTGAGGCCGATAGTGACTCTTTT 86603 | | || ||| | |||||||| |||||| | ||||||| | || | || || ||| Sbjct 490 CAAACTCAATTTCTTTATTTGATTGGACGTTTACGTTCTGCTTCTGAAACAGATTCATTT 431 Query 86604 TGCTTAGCAACAACAAACCCTGA 86626 || | || ||||||||||||| Sbjct 430 TGTATGGCGTCAACAAACCCTGA 408 >seq42267 Length=2018 Score = 86.0 bits (94), Expect = 5e-12 Identities = 176/257 (68%), Gaps = 5/257 (2%) Strand=Plus/Plus Query 87298 CAGCAGCAGGTAAGGTAGCCTTTAGGGAGTTATCTAAGAAGTTTATTGAGGCAGGTTTTA 87357 |||||||||||| ||| | | ||| | |||||||||| | | ||| |||| Sbjct 44 CAGCAGCAGGTATTATAGAATACACAGAGGCAGCTAAGAAGTTAAACCAATTAGGCTTTA 103 Query 87358 AAGTTAAACAAGACCCCA-TGCCGAATAACAAATCCAAACTTAAGAAATTTGAAGCTTTT 87416 ||||||||| || || | |||| | | || | | | | | || |||||| | || Sbjct 104 AAGTTAAACCTGATCCAACTGCCAACAATCAGAACAAGA-TGAAAAAATTTATTCCATTC 162 Query 87417 AGTTCTGCTTGTCAGAATGGTTTGGTTGGTATAGTTGA-GTCAACATTC--AATCCCGAA 87473 |||||||| ||||| || |||| ||| ||| || || | | ||| || | | Sbjct 163 AGTTCTGCATGTCAAAACGGTTCTGTTTATATTGTAGAAGAGAGTTTTCCTAACAAAGCA 222 Query 87474 ACATTGAAAGCATTCTATAAAGAACTAGAAGCTTTTGATGGAGAAAGGTCAACATCTTCT 87533 || || |||| |||||||||||| | ||| ||||| |||| ||||||||||| || | Sbjct 223 ACTTTAGAAGCTTTCTATAAAGAATTGGAATCTTTTAATGGTGAAAGGTCAACTTCCACC 282 Query 87534 CGTAAGGATGACTGGGC 87550 | || ||||| ||||| Sbjct 283 AGAAAAGATGATTGGGC 299 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 412515071222800