Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20arachidis_20[genbank_20GCA_5F001013415.1_202015-05-26] 130,300 sequences; 87,617,276 total letters Query= NC_020875.1 Length=182801 Score E Sequences producing significant alignments: (Bits) Value seq41062 123 3e-23 seq31514 100 3e-16 >seq41062 Length=2478 Score = 123 bits (136), Expect = 3e-23 Identities = 158/215 (73%), Gaps = 2/215 (1%) Strand=Plus/Plus Query 142600 AGAAGCACATCTTTACTTCTAACTTGAAGTATCAGATCATGCTTGATTCTGTACAAGGTC 142659 ||||||| || || |||||||| ||||| ||| || | |||||||| || ||||||| Sbjct 453 AGAAGCATATTTTCACTTCTAATTTGAAACGTCAAATTCTTCTTGATTCAGTTCAAGGTC 512 Query 142660 GTGGTCCTGGTATGGCATTCATTCCATACTG-TTCTCTTCCTGAATTGGAAGCATGTATG 142718 |||| || | ||| | | ||| | || ||| | |||||| | ||| | | || Sbjct 513 GTGGACCAAACCTAGCACTATTACCA-ATTGCTTCATTACCTGAAATTGAATCTTTCATT 571 Query 142719 ACAGTTTGGGAATTTATGGAAATGATTCACAGTCGTTCCTATACATATATTATTAAGAAC 142778 | ||||| |||| | |||| |||| || |||||||||||| |||||||| ||| Sbjct 572 GAAACTTGGGCATTTTTTGAAAGCGTTCATAGCCGTTCCTATACACATATTATTCGTAAC 631 Query 142779 GTGTATCCAGATCCATCGGAAGTCTTTGATACCAT 142813 |||||||| ||||||||||||| |||||||| || Sbjct 632 GTGTATCCGAATCCATCGGAAGTATTTGATACTAT 666 >seq31514 Length=3705 Score = 100 bits (110), Expect = 3e-16 Identities = 269/409 (66%), Gaps = 7/409 (2%) Strand=Plus/Minus Query 147137 CATTGTGGTCCTGCAGGTGCAGGTCACTTCGTAAAGATGGTTCACAATGGGATTGAATAT 147196 |||||||| || || || || || |||||||| |||||||| || ||||| ||||||||| Sbjct 3017 CATTGTGGGCCGGCGGGCGCCGGACACTTCGTCAAGATGGTACATAATGGCATTGAATAT 2958 Query 147197 GGAATCATGCAAGCATATGCAGAAGGTTTTAATATTCTTAAAGAGGCAAATGCAGGAAGA 147256 || | ||| || ||||| ||||| | ||||| || |||| || ||||| |||| Sbjct 2957 GGTGTGATGGCCGCCTATGCCGAAGGCCTGAATATACTGAAAGCCGCGAATGCCGGAAAC 2898 Query 147257 GCTTATGTGGCTGAGGGTGATGCCGAGGTGGCTCCCATGGAACACCCCGAAAATTATTGT 147316 | | | |||| ||||| || || || || || || ||| |||| || Sbjct 2897 GGCGAACGG---GAGGCAGATGCGGAAACCGCGCCTCTGTCCCATCCTGAATATTACCGT 2841 Query 147317 TACGACATTGATGTACCTGAGGTTGCTGAGTGTTGGCGTCGCGGTAGCGTGGTTGGGTCT 147376 | |||||| || | || | ||||| ||| ||||| | || || | || || Sbjct 2840 TTTGACATTAATCTTCCCGCCGTTGCGGAGGTATGGCGACATGGCTCGGTTATCGGTTCC 2781 Query 147377 TGGTTACTTGATCTTACTGCGTCTGTACTACGAAGC--GATCACGAACTTGATAAGTTTG 147434 ||| | || ||| | || || | | ||||| || | | ||| | || | || Sbjct 2780 TGGCTGCTGGATTTGAC--CGCCGAGGCGTTGAAGCAGGACCCGCACCTTAAAAACTATG 2723 Query 147435 ACGGGGGTGTTTCCGATAGTGGGGAAGGTCGTTGGACTGTTCATACCGCTGTGGATCTTG 147494 | || |||| || ||| || ||||| || ||||| | || || || ||||| | Sbjct 2722 ATGGTCGTGTGTCAGATTCCGGTGAAGGCCGCTGGACACTGCAGACAGCGGTGGAAACGG 2663 Query 147495 GCGTACCCGCTCCTGTATTGTCTGCTGCTCTCTATGAGCGATTCTCTTC 147543 |||| ||||| || || | | ||||||||| | ||| |||||||| Sbjct 2662 GCGTTCCCGCGCCGGTTCTCGCGTCTGCTCTCTTCGGGCGTTTCTCTTC 2614 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583882649668000