Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20arachidis_20[genbank_20GCA_5F001013415.1_202015-05-26] 130,300 sequences; 87,617,276 total letters Query= NC_020879.1 Length=161978 Score E Sequences producing significant alignments: (Bits) Value seq33499 165 8e-36 >seq33499 Length=26748 Score = 165 bits (182), Expect = 8e-36 Identities = 258/363 (71%), Gaps = 6/363 (2%) Strand=Plus/Minus Query 52120 ACAGTCTGCGGTACACCACCTTGGTATTTGTTGGCACGAATCATTTCGACTTCCAGCTGG 52179 || || || |||||||||||||||||||| | ||||| ||||||| ||||| || || Sbjct 24048 ACTGTTTGTGGTACACCACCTTGGTATTTCTCAGCACGTTTCATTTCAACTTCGAGTTGT 23989 Query 52180 CGCCATTTGATCATTTCAGGAGTAATGGTTTTCTGCAGCAGAGTGTTAGCTTCAGCTTCT 52239 ||| ||||| || ||||| || |||||||||| || | ||||||||||||||||| Sbjct 23988 TTCCAACGAATCATCTCTGGAGTGATTGTTTTCTGCAACACACTGTTAGCTTCAGCTTCT 23929 Query 52240 TTACCCGCGGCGTACAGTTTAGCATCAGCGTCACGTTCGTTAGCAACAGCGTTTTGTTCA 52299 || || || || | ||||||||| || || |||||||| || || | | | | Sbjct 23928 TTTTGAGCAGCATATAATTTAGCATCTGCATCTCGTTCGTTTGCCTGGGCTTCATTATTA 23869 Query 52300 CGAGCTTCACGTGCAGCTTCGGCGGTCTTAACCTGTTGTTGTGCCACTTTTTCGGCTTTA 52359 || ||||| || |||| || || ||||||| ||| |||| |||| | || Sbjct 23868 CGGGCTTCTCGATCAGCCTCTGCCTTCTTAACTGCTTGCTGTGTTTCTTTAGCTACTCGG 23809 Query 52360 TCCAGATCCGCTTGGGCTTGGTTTACGGCTTCTTCACGAAT-TTTG-GTTTGCTCAACCT 52417 |||||||| || || ||| ||| || |||||||||||| |||| |||| | |||| Sbjct 23808 TCCAGATCAGCCTGTGCTGCGTTAACCTGTTCTTCACGAATCTTTGTATTTGTT--ACCT 23751 Query 52418 G-GTCTTGAATCAGCTTCGGCAGAGTAATTTCTTGCAGGAATACTTCGGTTACTTCATAA 52476 | || || || | | |||| || || ||||||| ||| | ||| |||| |||| Sbjct 23750 GCTTCATG-ATTACATCAGGCAAGGTGATATCTTGCAAGAAGATTTCTTTTACAGTATAA 23692 Query 52477 CCA 52479 ||| Sbjct 23691 CCA 23689 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517357579144000