Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20arachidis_20[genbank_20GCA_5F001013415.1_202015-05-26] 130,300 sequences; 87,617,276 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq2641 95.1 2e-14 seq28556 84.2 4e-11 >seq2641 Length=263 Score = 95.1 bits (104), Expect = 2e-14 Identities = 147/209 (70%), Gaps = 1/209 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 || ||||| | |||||| | || | ||| | ||||| ||||| ||| || ||||| Sbjct 249 ATTCCACCACGAAGTCGAAGAACCAGATGCAGAGTAGATTCTTTCTGAATGTTGTAATCG 190 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 | | | ||| | || ||||| || ||||||||||| || | || ||||| || || Sbjct 189 GCAAGGGTTCGACCATCTTCCAACTGCTTACCAGCAAAGATGAGTCGTTGTTGATCGGGG 130 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || || || || ||||| | ||| |||| ||||| |||||||| || ||||| Sbjct 129 GGAATACCCTCCTTGTCTTG-AATTTGGTTTTGACATTGTCGATAGTATCCGAAGATTCA 71 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAA 172048 ||||| || || || || || || || || Sbjct 70 ACTTCAAGGGTGATAGTCTTGCCGGTCAA 42 >seq28556 Length=388 Score = 84.2 bits (92), Expect = 4e-11 Identities = 157/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 ||||| || | |||||| | || || || | |||| ||| || ||| || ||||| Sbjct 53 ATACCGCCACGAAGTCGAAGGACCAAGTGAAGGGTAGACTCCTTTTGAATGTTGTAATCA 112 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 || | | || | || |||| || || || || || || | | ||| ||||| || Sbjct 113 GAGAGGGTACGGCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGA 172 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || |||||||| || || || || || ||||| || ||||| || || ||| Sbjct 173 GGAATGCCTTCTTTGTCCTGGATCTTCGACTTGACATTGTCAATGGTATCCGAAGACTCT 232 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATT 172070 |||||||| || ||||| || || || | || || | ||| || |||||| Sbjct 233 ACTTCTAGCGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATTTGCATT 283 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 903661759740000