Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20arachidis_20[genbank_20GCA_5F001013415.1_202015-05-26] 130,300 sequences; 87,617,276 total letters Query= NC_021298.1 Length=51252 Score E Sequences producing significant alignments: (Bits) Value seq32038 235 2e-57 seq8276 217 5e-52 seq36676 145 2e-30 seq73294 141 3e-29 seq73638 131 5e-26 seq59305 82.4 2e-11 seq35294 80.6 9e-11 >seq32038 Length=828 Score = 235 bits (260), Expect = 2e-57 Identities = 337/469 (72%), Gaps = 22/469 (5%) Strand=Plus/Minus Query 39194 GGCGGTCAGCCCGAAGCGGATCTCGTGCTCCCCGTTGGGGGTGAACGAGCTGTTCGAGAC 39253 ||||||||| ||||||||||| ||| | | || | ||||||| ||||| Sbjct 460 GGCGGTCAGGCCGAAGCGGATGTCG-GTGCGACG--GCGGGTGAA------GTTCGCACT 410 Query 39254 CGAC------ACGTCGGGCGGCAGGACCCGAAGGCCCATGCGCCGAGACTCGCCGAGGTA 39307 |||| ||||| ||||| || ||| | ||||||||| || ||||| |||||| Sbjct 409 CGACTCGTTGACGTCCGGCGGGAGCACCTTGATGCCCATGCGGCGGCACTCGTTGAGGTA 350 Query 39308 CGTGGCCATCTTGTTCTTGTCGTCGCCCACCGAGGTGAGCGCAGCCGCCATGTACTCGGC 39367 | ||| ||||| ||||||||||| |||||||||||| | || |||||||||||||| Sbjct 349 CAGCGCCGACTTGTCCTTGTCGTCGCGCACCGAGGTGAGGACGGCGGCCATGTACTCGGC 290 Query 39368 TGGGTAGTGCGTCTTCAGCCACGCCGTGCGGTACGCGATGAGTCCGTACGCCGCCGAGTG 39427 ||||||| | ||| || | || || | ||||| ||||| ||||| ||||| ||||| Sbjct 289 CGGGTAGTTGGCCTTGAGGTAGGCGGTCCAGTACGTGATGACGCCGTAGGCCGCGGAGTG 230 Query 39428 CGCCTTGTTGAAGGCGTAGCCAGCGAACGGGACCAGCACGTCCCACACTGCCTG--GATG 39485 || ||||||||| |||||| | | |||||||| || | ||||||| || || ||| Sbjct 229 CGACTTGTTGAACGCGTAGTCGGAGAACGGGAGGAGGATCTCCCACA--GCTTGTCGATC 172 Query 39486 GCACCGTCCGAGTAGCCTCGCTCGCGCGCTCCCTTCTGGAAGTTCACGAACTCCTTGGCC 39545 || | | || | || | |||||| || || ||||||| || ||| |||| | Sbjct 171 GCGGCCTGCGGGAAGTCGCGCTCGAGCATGCCGGCCTGGAAGCCGGCGTACTGCTTGTCG 112 Query 39546 AGAACCTCGGGCTTCTTCTTGCCCATCGCCCGGCGAAGCAGGTCGGC--CTG-ACCGAGG 39602 || |||| |||||||||||||||||| ||||| || |||||| | | |||||| Sbjct 111 AGCTCCTCCTTCTTCTTCTTGCCCATCGCGCGGCGCAGGTTGTCGGCGGCGGCGCCGAGG 52 Query 39603 GTGTACCCGGCCATGACCTGCGCAACCTTCTGCACCTGCTCCTGGTAGA 39651 ||| |||| || | |||||||| | | |||||||||||||||| Sbjct 51 GTGAACCCCGCGAGCACCTGCGCGATGGCCATGACCTGCTCCTGGTAGA 3 >seq8276 Length=3740 Score = 217 bits (240), Expect = 5e-52 Identities = 219/283 (77%), Gaps = 4/283 (1%) Strand=Plus/Plus Query 40467 ACGTACTGGATCACCTCGCCACGACGCCGGTCATC--GAAGTCGATGTCGACATCGGGCA 40524 ||||| | ||||||| | | |||| || ||| |||||||| ||||| ||||||| Sbjct 625 ACGTATTCGATCACCCGGTCGCGAC--CGTCCATGCAGAAGTCGACGTCGAAGTCGGGCA 682 Query 40525 TGGACACGCGCTCGGGGTTCAGGAACCGCTCGAAGATGAGTCCGTGCTCCAGCGGGTCGA 40584 |||| | || |||||||| ||||| |||||||| | || | | ||||||| |||| Sbjct 683 TGGAGATCCGTTCGGGGTTGAGGAAGCGCTCGAACAGCAGGTCATAGGCCAGCGGATCGA 742 Query 40585 GGTCGGTGATCCCGAGGACGTAGGCGACCAGCGAACCGGCCGCAGAGCCTCGCCCAGGGC 40644 ||||||||||| ||| |||||||||||||| || ||||| | ||||| || || |||| Sbjct 743 GGTCGGTGATCTTGAGTACGTAGGCGACCAGGGAGCCGGCACCCGAGCCCCGGCCGGGGC 802 Query 40645 CGACCCAGACGCCGTTCTCCTTCGCCCAGCGGATGAAGTCCGCGACGACGAGGAAGTACG 40704 ||||| |||||||| | ||||||||| |||||||||| |||| ||||||||| Sbjct 803 CGACCGGCACGCCGTTGTTCTTCGCCCACTTGATGAAGTCCATCACGATGAGGAAGTAAC 862 Query 40705 ACGGGAAGCCCATCTGGATGATCATGTCGATCTCGTACTGGAG 40747 |||||||||||||||||||| ||||||| |||| | | ||| Sbjct 863 CGGGGAAGCCCATCTGGATGATGATGTCGAGCTCGAAGTTGAG 905 >seq36676 Length=975 Score = 145 bits (160), Expect = 2e-30 Identities = 167/225 (74%), Gaps = 0/225 (0%) Strand=Plus/Plus Query 40502 GAAGTCGATGTCGACATCGGGCATGGACACGCGCTCGGGGTTCAGGAACCGCTCGAAGAT 40561 ||| |||| ||||| |||||||||||| ||||| || ||||| || || || ||||| | Sbjct 606 GAAATCGACGTCGAAATCGGGCATGGAAACGCGTTCAGGGTTAAGAAAACGTTCGAACAG 665 Query 40562 GAGTCCGTGCTCCAGCGGGTCGAGGTCGGTGATCCCGAGGACGTAGGCGACCAGCGAACC 40621 || || ||| || || ||||| ||||| || ||| | ||||| ||||||||||| Sbjct 666 CAGGTCGAACTCAAGGGGATCGAGATCGGTAATTTTGAGCGCATAGGCCACCAGCGAACC 725 Query 40622 GGCCGCAGAGCCTCGCCCAGGGCCGACCCAGACGCCGTTCTCCTTCGCCCAGCGGATGAA 40681 |||| | || || || || || || ||| |||||||| || |||| ||| |||| || Sbjct 726 GGCCCCCGAACCGCGTCCCGGCCCTACCGGTACGCCGTTATCTTTCGACCACTGGATAAA 785 Query 40682 GTCCGCGACGACGAGGAAGTACGACGGGAAGCCCATCTGGATGAT 40726 ||| |||| |||||||| ||||| ||||||||| |||| Sbjct 786 CTCCATTACGATCAGGAAGTAGCCGGGGAATCCCATCTGGTTGAT 830 >seq73294 Length=656 Score = 141 bits (156), Expect = 3e-29 Identities = 206/286 (72%), Gaps = 9/286 (3%) Strand=Plus/Plus Query 40430 GATCTGCGCGACCTTGTCGGCCCCGTACTTCCGGGTGACGTACTGGATCACCTCGCCACG 40489 ||||||||| |||| ||| ||| || || || || || |||||||||| | || Sbjct 158 GATCTGCGCCACCTGTTCGCGCCCATATTTGCGCTGCACATAGCGGATCACCTCTTCGCG 217 Query 40490 ACG--CCGGTCATCGAAGTCGATGTCGACATCGGGCATGGACACGCGCTCGGGGTTCAGG 40547 || || | || ||||||||| |||| |||||||| |||||||| || ||||| ||| Sbjct 218 GCGATCCTGGCA--GAAGTCGATATCGAAGTCGGGCATCGACACGCGTTCCGGGTTGAGG 275 Query 40548 AACCGCTCGAAGATGAGTCCGTGCTCC--AGCGGGTCGAGGTCGGTGATCCCGAGGACGT 40605 || || ||||||| || || | | ||||| |||| ||||| ||| || ||| Sbjct 276 AAGCGTTCGAAGAGCAG--CGAGAAGCGTAGCGGATCGACATCGGTAATCGTCAGCGCGT 333 Query 40606 AGGCGACCAGCGAACCGGCCGCAGAGCCTCGCCCAGGGCCGACCCAGACGCCGTTCTCCT 40665 ||||||||||||| || || | || || || |||||||||||| | | | || || Sbjct 334 AGGCGACCAGCGATCCCGCACCCGAACCACGACCAGGGCCGACCGGAATATCATGCTGCT 393 Query 40666 TCGCCCAGCGGATGAAGTCCGCGACGACGAGGAAGTACGACGGGAA 40711 | ||||| ||||||||| || |||| |||||||| | |||||| Sbjct 394 TTGCCCATTTGATGAAGTCGGCAACGATCAGGAAGTA-GCCGGGAA 438 >seq73638 Length=482 Score = 131 bits (144), Expect = 5e-26 Identities = 167/225 (74%), Gaps = 4/225 (2%) Strand=Plus/Plus Query 40527 GACACGCGCTCGGGGTTCAGGAACCGCTCGAAGATG-AGTCCGTGCTCCAGCGGGTCGAG 40585 ||||||| |||||||| ||||| |||||||| | | || || | ||||||||| || Sbjct 3 GACACGCT-TCGGGGTTGAGGAAGCGCTCGAACACGCAGGTTGTACGGCAGCGGGTCCAG 61 Query 40586 GTCGGTGATCCCGAGGACGTAGGCGACCAGCGAACCGGCCGCAG-AGCCTCGCCCAGGGC 40644 |||||||||| || | | || |||||||| || | ||| | |||| || || |||| Sbjct 62 GTCGGTGATCTGCAGCGCCCACGCCACCAGCGAGCCCGGCGCCGGAGCCGCGGCCCGGGC 121 Query 40645 CGACCCAG-ACGCCGTTCTCCTTCGCCCAGCGGATGAAGTCCGCGACGACGAGGAAGTAC 40703 ||| | | | ||| | | ||| |||| |||||||||| || |||| |||||||| Sbjct 122 CGATCGGGGATGCCCTGGTTCTTGCCCCACTGGATGAAGTCGGCCACGATCAGGAAGTAG 181 Query 40704 GACGGGAAGCCCATCTGGATGATCATGTCGATCTCGTACTGGAGC 40748 ||||||||||||| ||||||| |||| | |||| ||| |||| Sbjct 182 CCGGGGAAGCCCATCTTGATGATCGTGTCCAGCTCGAACTCGAGC 226 >seq59305 Length=503 Score = 82.4 bits (90), Expect = 2e-11 Identities = 84/110 (76%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 39345 AGCGCAGCCGCCATGTACTCGGCTGGGTAGTGCGTCTTCAGCCACGCCGTGCGGTACGCG 39404 ||| | || |||||| | || || ||||| ||||||||||| || || |||| | Sbjct 324 AGCACCGCGGCCATGAAGGGCGCCGGATAGTGGGTCTTCAGCCAGGCGGTCTGGTAGGAC 383 Query 39405 ATGAGTCCGTACGCCGCCGAGTGCGCCTTGTTGAAGGCGTAGCCAGCGAA 39454 | || || || ||||||||||||| |||||||||| ||||||| ||||| Sbjct 384 ACCAGGCCATAGGCCGCCGAGTGCGACTTGTTGAAGCCGTAGCCGGCGAA 433 >seq35294 Length=305 Score = 80.6 bits (88), Expect = 9e-11 Identities = 100/137 (73%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 39540 TTGGCCAGAACCTCGGGCTTCTTCTTGCCCATCGCCCGGCGAAGCAGGTCGGCCTGACCG 39599 ||||||| | || ||||||||||| ||||| || || || |||| ||| ||| || Sbjct 277 TTGGCCATCTCTTCAGGCTTCTTCTTACCCATGGCGCGACGCAGCATGTCCGCCCCGCCC 218 Query 39600 AGGGTGTACCCGGCCATGACCTGCGCAACCTTCTGCACCTGCTCCTGGTAGATGATGAGC 39659 || || || |||| || |||||| |||| || | ||||| |||||||| | ||| | Sbjct 217 AGCGTATAGCCGGACAGGACCTGGGCAATCTGCATGACCTGTTCCTGGTACAGGATAATG 158 Query 39660 TGGAAGGTCGGGTCCAG 39676 | ||||||| ||||| Sbjct 157 CCGTAGGTCGGCTCCAG 141 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 163631219000400