Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20arachidis_20[genbank_20GCA_5F001013415.1_202015-05-26] 130,300 sequences; 87,617,276 total letters Query= NC_021304.1 Length=51552 Score E Sequences producing significant alignments: (Bits) Value seq32038 226 9e-55 seq8276 217 5e-52 seq36676 145 3e-30 seq73294 143 9e-30 seq73638 131 6e-26 seq59305 82.4 3e-11 >seq32038 Length=828 Score = 226 bits (250), Expect = 9e-55 Identities = 335/469 (71%), Gaps = 22/469 (5%) Strand=Plus/Minus Query 39482 GGCGGTCAGCCCGAAGCGGATCTCGTGCTCCCCGTTGGGGGTGAACGAGCTGTTCGAGAC 39541 ||||||||| ||||||||||| ||| | | || | ||||||| ||||| Sbjct 460 GGCGGTCAGGCCGAAGCGGATGTCG-GTGCGACG--GCGGGTGAA------GTTCGCACT 410 Query 39542 CGAC------ACGTCGGGCGGCAGGACCCGCAGGCCCATGCGCCGAGACTCGCCGAGGTA 39595 |||| ||||| ||||| || ||| | ||||||||| || ||||| |||||| Sbjct 409 CGACTCGTTGACGTCCGGCGGGAGCACCTTGATGCCCATGCGGCGGCACTCGTTGAGGTA 350 Query 39596 CGTGGCCATCTTGTTCTTGTCGTCGCCCACCGAGGTGAGCGCAGCCGCCATGTACTCGGC 39655 | ||| ||||| ||||||||||| |||||||||||| | || |||||||||||||| Sbjct 349 CAGCGCCGACTTGTCCTTGTCGTCGCGCACCGAGGTGAGGACGGCGGCCATGTACTCGGC 290 Query 39656 TGGGTAGTGCGTCTTCAGCCACGCCGTGCGGTACGCGATGAGTCCGTACGCCGCCGAGTG 39715 ||||||| | ||| || | || || | ||||| ||||| ||||| ||||| ||||| Sbjct 289 CGGGTAGTTGGCCTTGAGGTAGGCGGTCCAGTACGTGATGACGCCGTAGGCCGCGGAGTG 230 Query 39716 CGCCTTGTTGAAGGCGTAGCCAGCGAACGGGACCAGCACGTCCCACACTGCCTG--GATG 39773 || ||||||||| |||||| | | |||||||| || | ||||||| || || ||| Sbjct 229 CGACTTGTTGAACGCGTAGTCGGAGAACGGGAGGAGGATCTCCCACA--GCTTGTCGATC 172 Query 39774 GCACCGTCCGAGTAGCCTCGCTCGCGCGCTCCCTTCTGGAAGTTCACGAACTCCTTGGCC 39833 || | | || | || | |||||| || || ||||||| || ||| |||| | Sbjct 171 GCGGCCTGCGGGAAGTCGCGCTCGAGCATGCCGGCCTGGAAGCCGGCGTACTGCTTGTCG 112 Query 39834 AGAACCTCGGGCTTCTTCTTGCCCATCGCCCGGCGAAGCAGGTCGGC--CTG-ACCGAGG 39890 || |||| |||||||||||||||||| ||||| || |||||| | | |||||| Sbjct 111 AGCTCCTCCTTCTTCTTCTTGCCCATCGCGCGGCGCAGGTTGTCGGCGGCGGCGCCGAGG 52 Query 39891 GTGTACCCGGCCATGACCTGTGCAACCTTCTGCACTTGCTCCTGGTAGA 39939 ||| |||| || | ||||| || | | || ||||||||||||| Sbjct 51 GTGAACCCCGCGAGCACCTGCGCGATGGCCATGACCTGCTCCTGGTAGA 3 >seq8276 Length=3740 Score = 217 bits (240), Expect = 5e-52 Identities = 219/283 (77%), Gaps = 4/283 (1%) Strand=Plus/Plus Query 40755 ACGTACTGGATCACCTCGCCACGACGCCGGTCATC--GAAGTCGATGTCGACATCGGGCA 40812 ||||| | ||||||| | | |||| || ||| |||||||| ||||| ||||||| Sbjct 625 ACGTATTCGATCACCCGGTCGCGAC--CGTCCATGCAGAAGTCGACGTCGAAGTCGGGCA 682 Query 40813 TGGACACGCGCTCGGGGTTCAGGAACCGCTCGAAGATGAGCCCGTGCTCCAGCGGGTCGA 40872 |||| | || |||||||| ||||| |||||||| | || | | ||||||| |||| Sbjct 683 TGGAGATCCGTTCGGGGTTGAGGAAGCGCTCGAACAGCAGGTCATAGGCCAGCGGATCGA 742 Query 40873 GGTCGGTGATCCCGAGGACGTAGGCGACCAGCGAACCGGCCGCAGAGCCTCGCCCAGGGC 40932 ||||||||||| ||| |||||||||||||| || ||||| | ||||| || || |||| Sbjct 743 GGTCGGTGATCTTGAGTACGTAGGCGACCAGGGAGCCGGCACCCGAGCCCCGGCCGGGGC 802 Query 40933 CGACCCAGACGCCGTTCTCCTTCGCCCAGCGGATGAAGTCCGCGACGACGAGGAAGTACG 40992 ||||| |||||||| | ||||||||| |||||||||| |||| ||||||||| Sbjct 803 CGACCGGCACGCCGTTGTTCTTCGCCCACTTGATGAAGTCCATCACGATGAGGAAGTAAC 862 Query 40993 ACGGGAAGCCCATCTGGATGATCATGTCGATCTCGTACTGGAG 41035 |||||||||||||||||||| ||||||| |||| | | ||| Sbjct 863 CGGGGAAGCCCATCTGGATGATGATGTCGAGCTCGAAGTTGAG 905 >seq36676 Length=975 Score = 145 bits (160), Expect = 3e-30 Identities = 167/225 (74%), Gaps = 0/225 (0%) Strand=Plus/Plus Query 40790 GAAGTCGATGTCGACATCGGGCATGGACACGCGCTCGGGGTTCAGGAACCGCTCGAAGAT 40849 ||| |||| ||||| |||||||||||| ||||| || ||||| || || || ||||| | Sbjct 606 GAAATCGACGTCGAAATCGGGCATGGAAACGCGTTCAGGGTTAAGAAAACGTTCGAACAG 665 Query 40850 GAGCCCGTGCTCCAGCGGGTCGAGGTCGGTGATCCCGAGGACGTAGGCGACCAGCGAACC 40909 || || ||| || || ||||| ||||| || ||| | ||||| ||||||||||| Sbjct 666 CAGGTCGAACTCAAGGGGATCGAGATCGGTAATTTTGAGCGCATAGGCCACCAGCGAACC 725 Query 40910 GGCCGCAGAGCCTCGCCCAGGGCCGACCCAGACGCCGTTCTCCTTCGCCCAGCGGATGAA 40969 |||| | || || || || || || ||| |||||||| || |||| ||| |||| || Sbjct 726 GGCCCCCGAACCGCGTCCCGGCCCTACCGGTACGCCGTTATCTTTCGACCACTGGATAAA 785 Query 40970 GTCCGCGACGACGAGGAAGTACGACGGGAAGCCCATCTGGATGAT 41014 ||| |||| |||||||| ||||| ||||||||| |||| Sbjct 786 CTCCATTACGATCAGGAAGTAGCCGGGGAATCCCATCTGGTTGAT 830 >seq73294 Length=656 Score = 143 bits (158), Expect = 9e-30 Identities = 204/284 (72%), Gaps = 5/284 (2%) Strand=Plus/Plus Query 40718 GATCTGCGCGACCTTGTCGGCCCCGTACTTCCGGGTGACGTACTGGATCACCTCGCCACG 40777 ||||||||| |||| ||| ||| || || || || || |||||||||| | || Sbjct 158 GATCTGCGCCACCTGTTCGCGCCCATATTTGCGCTGCACATAGCGGATCACCTCTTCGCG 217 Query 40778 ACG--CCGGTCATCGAAGTCGATGTCGACATCGGGCATGGACACGCGCTCGGGGTTCAGG 40835 || || | || ||||||||| |||| |||||||| |||||||| || ||||| ||| Sbjct 218 GCGATCCTGGCA--GAAGTCGATATCGAAGTCGGGCATCGACACGCGTTCCGGGTTGAGG 275 Query 40836 AACCGCTCGAAGATGAGCCCGTGCTCCAGCGGGTCGAGGTCGGTGATCCCGAGGACGTAG 40895 || || ||||||| ||| | ||||| |||| ||||| ||| || ||||| Sbjct 276 AAGCGTTCGAAGAGCAGCGAGAAGCGTAGCGGATCGACATCGGTAATCGTCAGCGCGTAG 335 Query 40896 GCGACCAGCGAACCGGCCGCAGAGCCTCGCCCAGGGCCGACCCAGACGCCGTTCTCCTTC 40955 ||||||||||| || || | || || || |||||||||||| | | | || ||| Sbjct 336 GCGACCAGCGATCCCGCACCCGAACCACGACCAGGGCCGACCGGAATATCATGCTGCTTT 395 Query 40956 GCCCAGCGGATGAAGTCCGCGACGACGAGGAAGTACGACGGGAA 40999 ||||| ||||||||| || |||| |||||||| | |||||| Sbjct 396 GCCCATTTGATGAAGTCGGCAACGATCAGGAAGTA-GCCGGGAA 438 >seq73638 Length=482 Score = 131 bits (144), Expect = 6e-26 Identities = 167/225 (74%), Gaps = 4/225 (2%) Strand=Plus/Plus Query 40815 GACACGCGCTCGGGGTTCAGGAACCGCTCGAAGATG-AGCCCGTGCTCCAGCGGGTCGAG 40873 ||||||| |||||||| ||||| |||||||| | | || || | ||||||||| || Sbjct 3 GACACGCT-TCGGGGTTGAGGAAGCGCTCGAACACGCAGGTTGTACGGCAGCGGGTCCAG 61 Query 40874 GTCGGTGATCCCGAGGACGTAGGCGACCAGCGAACCGGCCGCAG-AGCCTCGCCCAGGGC 40932 |||||||||| || | | || |||||||| || | ||| | |||| || || |||| Sbjct 62 GTCGGTGATCTGCAGCGCCCACGCCACCAGCGAGCCCGGCGCCGGAGCCGCGGCCCGGGC 121 Query 40933 CGACCCAG-ACGCCGTTCTCCTTCGCCCAGCGGATGAAGTCCGCGACGACGAGGAAGTAC 40991 ||| | | | ||| | | ||| |||| |||||||||| || |||| |||||||| Sbjct 122 CGATCGGGGATGCCCTGGTTCTTGCCCCACTGGATGAAGTCGGCCACGATCAGGAAGTAG 181 Query 40992 GACGGGAAGCCCATCTGGATGATCATGTCGATCTCGTACTGGAGC 41036 ||||||||||||| ||||||| |||| | |||| ||| |||| Sbjct 182 CCGGGGAAGCCCATCTTGATGATCGTGTCCAGCTCGAACTCGAGC 226 >seq59305 Length=503 Score = 82.4 bits (90), Expect = 3e-11 Identities = 84/110 (76%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 39633 AGCGCAGCCGCCATGTACTCGGCTGGGTAGTGCGTCTTCAGCCACGCCGTGCGGTACGCG 39692 ||| | || |||||| | || || ||||| ||||||||||| || || |||| | Sbjct 324 AGCACCGCGGCCATGAAGGGCGCCGGATAGTGGGTCTTCAGCCAGGCGGTCTGGTAGGAC 383 Query 39693 ATGAGTCCGTACGCCGCCGAGTGCGCCTTGTTGAAGGCGTAGCCAGCGAA 39742 | || || || ||||||||||||| |||||||||| ||||||| ||||| Sbjct 384 ACCAGGCCATAGGCCGCCGAGTGCGACTTGTTGAAGCCGTAGCCGGCGAA 433 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 164589733580400