Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20arachidis_20[genbank_20GCA_5F001013415.1_202015-05-26] 130,300 sequences; 87,617,276 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq42932 93.3 1e-13 seq97857 84.2 6e-11 >seq42932 Length=2417 Score = 93.3 bits (102), Expect = 1e-13 Identities = 153/221 (69%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 302584 TTGATTAAACGACGCTGAATATAACCAGTTGTAGATGTTTTTACAGCTGTATCAATTAGA 302643 |||| || |||||| || |||||||| || | || || || ||||| ||||| ||| Sbjct 1397 TTGACTAGACGACGTTGGATATAACCGGTCTCGGCAGTCTTGACTGCTGTGTCAATAAGA 1338 Query 302644 CCAACACGACCACCCATAGCATGGAAGAATAGCTCTTCCGGTCGTAGCCCCCCAATAAAG 302703 || |||||||| |||| ||||||||||| | ||| || | || | | | || Sbjct 1337 CCTTCACGACCAGCCATGGCATGGAAGAAGAATTCTGAGGGAGTCAATCCGCGGAGATAG 1278 Query 302704 GAGCTCTCAACGAAACCACGCGCCTCGGGCGAATCGTCGAACTTGGTAAAGTGTGGCAGG 302763 ||| | ||||| || ||||| | || ||||| | ||| ||| || || ||||||| | Sbjct 1277 GAGTTTTCAACAAAGCCACGAGATTCTGGCGAGTAATCGTCCTTTGTGAAATGTGGCAAG 1218 Query 302764 GTCCTGTTCTCATAGCCGTATGGGATACGCTTTCCATCAAC 302804 |||| || | | ||||| || || || | || ||||| Sbjct 1217 GTCCGGTATTTGAACCCGTAAGGAATGCGTTGGCCCTCAAC 1177 Score = 93.3 bits (102), Expect = 1e-13 Identities = 113/147 (77%), Gaps = 9/147 (6%) Strand=Plus/Minus Query 301815 AATTTC-TTCAATACGGGGAACACCACGGGTTACGTTAGACTTGGACGCAACACCAGCAA 301873 |||||| |||||| || || || ||| | |||||||| ||| |||| |||||||||| Sbjct 2189 AATTTCCTTCAAT-CGAGGCACGCCAAGCGTTACGTT---CTTCGACGACACACCAGCAA 2134 Query 301874 AGTGGAAAGTATTCAGAGTTAATTGAGTAGTTGGCTCACCAAT-ACTTTGTGC-CGCAAT 301931 | |||||||| ||||| || | ||||||| ||||||||||| || || || ||||| Sbjct 2133 AATGGAAAGTGTTCAGTGTCATCTGAGTAGCAGGCTCACCAATGAC--TGAGCTCGCAAG 2076 Query 301932 CATACCAACCATTTCTCCTGGTGCTAC 301958 | ||||||||| || || || || || Sbjct 2075 GACACCAACCATCTCACCAGGAGCCAC 2049 >seq97857 Length=911 Score = 84.2 bits (92), Expect = 6e-11 Identities = 120/168 (71%), Gaps = 1/168 (1%) Strand=Plus/Plus Query 155591 AGACGCCAGATTACATACCGCAGTCTCCTTGTCGTCGCTGTATTCTACAATCTCACAGCA 155650 ||| |||| ||||| || ||| ||| | | || |||| || ||||||||| ||| Sbjct 315 AGAGGCCAAGTTACAGACAGCAACCTCATCTGGGGCGGTGTACTCAACAATCTCAGTGCA 374 Query 155651 CAGGTTAGAACTCTTGATGGTGCCTAAATTCTTCTGGTTAGATTTACTGTTACAAGCATC 155710 | ||| ||||| ||| ||||| | |||||||||||| | ||| | ||| ||||| || Sbjct 375 TAAGTTCGAACTGCGGATAGTGCCGAGATTCTTCTGGTT-GCTTTGCGGTTGCAAGCGTC 433 Query 155711 CTTGTATAGAATGTATGGGGTTCCTGTCTCCATCTGTGCGTCCAGAAT 155758 |||||| || ||| | || | || ||||| | || || || || || Sbjct 434 CTTGTAAAGCATGAAGGGATTACCAGTCTCAGTTTGAGCCTCGAGGAT 481 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1469360446511100