Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20arachidis_20[genbank_20GCA_5F001013415.1_202015-05-26] 130,300 sequences; 87,617,276 total letters Query= NC_021339.1 Length=51077 Score E Sequences producing significant alignments: (Bits) Value seq32038 217 5e-52 seq8276 214 6e-51 seq73294 143 9e-30 seq36676 140 1e-28 seq73638 125 2e-24 seq102312 102 3e-17 seq59305 82.4 2e-11 seq35294 80.6 9e-11 >seq32038 Length=828 Score = 217 bits (240), Expect = 5e-52 Identities = 333/469 (71%), Gaps = 22/469 (5%) Strand=Plus/Minus Query 38942 GGCGGTCAGTCCGAAGCGGATCTCGTGCTCCCCGTTGGGGGTGAACGAGCTGTTCGAGAC 39001 ||||||||| ||||||||||| ||| | | || | ||||||| ||||| Sbjct 460 GGCGGTCAGGCCGAAGCGGATGTCG-GTGCGACG--GCGGGTGAA------GTTCGCACT 410 Query 39002 CGAC------ACGTCGGGCGGCAGGACCCGAAGGCCCATGCGCCGTGCCTCGCCGAGGTA 39055 |||| ||||| ||||| || ||| | ||||||||| || |||| |||||| Sbjct 409 CGACTCGTTGACGTCCGGCGGGAGCACCTTGATGCCCATGCGGCGGCACTCGTTGAGGTA 350 Query 39056 CGTGGCCATCTTGTTCTTGTCGTCGCCCACCGAGGTGAGCGCAGCCGCCATGTACTCGGC 39115 | ||| ||||| ||||||||||| |||||||||||| | || |||||||||||||| Sbjct 349 CAGCGCCGACTTGTCCTTGTCGTCGCGCACCGAGGTGAGGACGGCGGCCATGTACTCGGC 290 Query 39116 CGGGTAGTGCGTCTTCAACCACGCCGTGCGGTACGCGATGAGTCCGTACGCCGCCGAGTG 39175 |||||||| | ||| | | || || | ||||| ||||| ||||| ||||| ||||| Sbjct 289 CGGGTAGTTGGCCTTGAGGTAGGCGGTCCAGTACGTGATGACGCCGTAGGCCGCGGAGTG 230 Query 39176 CGCCTTGTTGAAGGCGTAGCCAGCGAAGGGGACCAGCACGTCCCACACTGCCTG--GATG 39233 || ||||||||| |||||| | | ||| |||| || | ||||||| || || ||| Sbjct 229 CGACTTGTTGAACGCGTAGTCGGAGAACGGGAGGAGGATCTCCCACA--GCTTGTCGATC 172 Query 39234 GCACCGTCCGAGTAGCCTCGCTCGCGCGCTCCCTTCTGGAAGTTCACGAACTCCTTGGCC 39293 || | | || | || | |||||| || || ||||||| || ||| |||| | Sbjct 171 GCGGCCTGCGGGAAGTCGCGCTCGAGCATGCCGGCCTGGAAGCCGGCGTACTGCTTGTCG 112 Query 39294 AGAACCTCGGGCTTCTTCTTGCCCATCGCCCGGCGAAGCAGGTCGGC--CTG-ACCCAGG 39350 || |||| |||||||||||||||||| ||||| || |||||| | | || ||| Sbjct 111 AGCTCCTCCTTCTTCTTCTTGCCCATCGCGCGGCGCAGGTTGTCGGCGGCGGCGCCGAGG 52 Query 39351 GTGTACCCGGCCATGACCTGTGCAACCTTCTGCACCTGCTCCTGGTAGA 39399 ||| |||| || | ||||| || | | |||||||||||||||| Sbjct 51 GTGAACCCCGCGAGCACCTGCGCGATGGCCATGACCTGCTCCTGGTAGA 3 >seq8276 Length=3740 Score = 214 bits (236), Expect = 6e-51 Identities = 195/246 (79%), Gaps = 0/246 (0%) Strand=Plus/Plus Query 40250 GAAGTCGATGTCGACATCGGGCATGGACACGCGCTCGGGGTTCAGGAAGCGCTCGAAGAT 40309 |||||||| ||||| ||||||||||| | || |||||||| |||||||||||||| | Sbjct 660 GAAGTCGACGTCGAAGTCGGGCATGGAGATCCGTTCGGGGTTGAGGAAGCGCTCGAACAG 719 Query 40310 GAGCCCGTGCTCCAGCGGGTCGAGGTCGGTGATCCCGAGGACGTAGGCGACCAGCGAACC 40369 || | | ||||||| ||||||||||||||| ||| |||||||||||||| || || Sbjct 720 CAGGTCATAGGCCAGCGGATCGAGGTCGGTGATCTTGAGTACGTAGGCGACCAGGGAGCC 779 Query 40370 GGCCGCAGAGCCCCGCCCAGGGCCGACCCAGACCCCGTTCTCCTTCGCCCAGCGGATGAA 40429 ||| | |||||||| || ||||||||| || ||||| | ||||||||| |||||| Sbjct 780 GGCACCCGAGCCCCGGCCGGGGCCGACCGGCACGCCGTTGTTCTTCGCCCACTTGATGAA 839 Query 40430 GTCCGCGACGACGAGGAAGTACGACGGGAACCCCATCTGGATGATCATGTCGATCTCGTA 40489 |||| |||| ||||||||| ||||| |||||||||||||| ||||||| |||| | Sbjct 840 GTCCATCACGATGAGGAAGTAACCGGGGAAGCCCATCTGGATGATGATGTCGAGCTCGAA 899 Query 40490 CTGGAG 40495 | ||| Sbjct 900 GTTGAG 905 >seq73294 Length=656 Score = 143 bits (158), Expect = 9e-30 Identities = 204/284 (72%), Gaps = 5/284 (2%) Strand=Plus/Plus Query 40178 GATCTGCGCGACCTTGTCGGCCCCGTACTTCCGGGTGACGTACTGGATGACCTCGCCACG 40237 ||||||||| |||| ||| ||| || || || || || |||| ||||| | || Sbjct 158 GATCTGCGCCACCTGTTCGCGCCCATATTTGCGCTGCACATAGCGGATCACCTCTTCGCG 217 Query 40238 ACG--CCGGTCATCGAAGTCGATGTCGACATCGGGCATGGACACGCGCTCGGGGTTCAGG 40295 || || | || ||||||||| |||| |||||||| |||||||| || ||||| ||| Sbjct 218 GCGATCCTGGCA--GAAGTCGATATCGAAGTCGGGCATCGACACGCGTTCCGGGTTGAGG 275 Query 40296 AAGCGCTCGAAGATGAGCCCGTGCTCCAGCGGGTCGAGGTCGGTGATCCCGAGGACGTAG 40355 ||||| ||||||| ||| | ||||| |||| ||||| ||| || ||||| Sbjct 276 AAGCGTTCGAAGAGCAGCGAGAAGCGTAGCGGATCGACATCGGTAATCGTCAGCGCGTAG 335 Query 40356 GCGACCAGCGAACCGGCCGCAGAGCCCCGCCCAGGGCCGACCCAGACCCCGTTCTCCTTC 40415 ||||||||||| || || | || || || |||||||||||| | | | || ||| Sbjct 336 GCGACCAGCGATCCCGCACCCGAACCACGACCAGGGCCGACCGGAATATCATGCTGCTTT 395 Query 40416 GCCCAGCGGATGAAGTCCGCGACGACGAGGAAGTACGACGGGAA 40459 ||||| ||||||||| || |||| |||||||| | |||||| Sbjct 396 GCCCATTTGATGAAGTCGGCAACGATCAGGAAGTA-GCCGGGAA 438 >seq36676 Length=975 Score = 140 bits (154), Expect = 1e-28 Identities = 166/225 (74%), Gaps = 0/225 (0%) Strand=Plus/Plus Query 40250 GAAGTCGATGTCGACATCGGGCATGGACACGCGCTCGGGGTTCAGGAAGCGCTCGAAGAT 40309 ||| |||| ||||| |||||||||||| ||||| || ||||| || || || ||||| | Sbjct 606 GAAATCGACGTCGAAATCGGGCATGGAAACGCGTTCAGGGTTAAGAAAACGTTCGAACAG 665 Query 40310 GAGCCCGTGCTCCAGCGGGTCGAGGTCGGTGATCCCGAGGACGTAGGCGACCAGCGAACC 40369 || || ||| || || ||||| ||||| || ||| | ||||| ||||||||||| Sbjct 666 CAGGTCGAACTCAAGGGGATCGAGATCGGTAATTTTGAGCGCATAGGCCACCAGCGAACC 725 Query 40370 GGCCGCAGAGCCCCGCCCAGGGCCGACCCAGACCCCGTTCTCCTTCGCCCAGCGGATGAA 40429 |||| | || || || || || || ||| || ||||| || |||| ||| |||| || Sbjct 726 GGCCCCCGAACCGCGTCCCGGCCCTACCGGTACGCCGTTATCTTTCGACCACTGGATAAA 785 Query 40430 GTCCGCGACGACGAGGAAGTACGACGGGAACCCCATCTGGATGAT 40474 ||| |||| |||||||| ||||| ||||||||| |||| Sbjct 786 CTCCATTACGATCAGGAAGTAGCCGGGGAATCCCATCTGGTTGAT 830 >seq73638 Length=482 Score = 125 bits (138), Expect = 2e-24 Identities = 166/225 (74%), Gaps = 4/225 (2%) Strand=Plus/Plus Query 40275 GACACGCGCTCGGGGTTCAGGAAGCGCTCGAAGATG-AGCCCGTGCTCCAGCGGGTCGAG 40333 ||||||| |||||||| |||||||||||||| | | || || | ||||||||| || Sbjct 3 GACACGCT-TCGGGGTTGAGGAAGCGCTCGAACACGCAGGTTGTACGGCAGCGGGTCCAG 61 Query 40334 GTCGGTGATCCCGAGGACGTAGGCGACCAGCGA-ACCGGCCGCAGAGCCCCGCCCAGGGC 40392 |||||||||| || | | || |||||||| ||||| | ||||| || || |||| Sbjct 62 GTCGGTGATCTGCAGCGCCCACGCCACCAGCGAGCCCGGCGCCGGAGCCGCGGCCCGGGC 121 Query 40393 CGA-CCCAGACCCCGTTCTCCTTCGCCCAGCGGATGAAGTCCGCGACGACGAGGAAGTAC 40451 ||| | || || | | ||| |||| |||||||||| || |||| |||||||| Sbjct 122 CGATCGGGGATGCCCTGGTTCTTGCCCCACTGGATGAAGTCGGCCACGATCAGGAAGTAG 181 Query 40452 GACGGGAACCCCATCTGGATGATCATGTCGATCTCGTACTGGAGC 40496 ||||| ||||||| ||||||| |||| | |||| ||| |||| Sbjct 182 CCGGGGAAGCCCATCTTGATGATCGTGTCCAGCTCGAACTCGAGC 226 >seq102312 Length=400 Score = 102 bits (112), Expect = 3e-17 Identities = 249/375 (66%), Gaps = 17/375 (5%) Strand=Plus/Minus Query 41003 GGCCTCGTCGTACTGCCCGAGGTTGAGCCGGGTCATGATCGCACCGCCAGGGCAGCCAGT 41062 ||||||||||||||| || ||| ||||| ||| | | | || |||||||| || Sbjct 390 GGCCTCGTCGTACTGGCCCAGGCGCAGCCGCGTCTGCACCTCCCCCGACGGGCAGCCCGT 331 Query 41063 CGTGACGACCAGGCCCTCGTTGTGCTCGGCGACCAGCTCGAAGTCCATGCGCGGGTACTT 41122 ||| ||| ||||| | || || | || ||||||| ||||||||| || ||| Sbjct 330 GGTGGCGATGAGGCCGGAGGAGTACTGCGAGAGCAGCTCGCGGTCCATGCGGGG---CTT 274 Query 41123 CCCGAGCAGGCCCTCCTGGTACGACCGAGAGCTGAGCTTCATGAGGTTGTGGAGCCCGGT 41182 ||| | |||||| || | | | ||| | ||| | |||||||| | ||||| Sbjct 273 GTAGAGGAAGCCCTCGAGGCTGGCCAGGCTGCTCATCTTGAACAGGTTGTGCATGCCGGT 214 Query 41183 CTTGTTCGTGGAGAGGATCGTGAGGTGCGTGTACGCGCCGTTGCCCGACACGTCGTAAC- 41241 | ||||| || || ||||| | ||| ||||||| |||| ||||| ||||||| | Sbjct 213 CGTGTTCTCGGCCAGCATCGTCATGTGGGTGTACGAGCCGGCACCCGAGACGTCGTCGCC 154 Query 41242 ---GCTTCTGTTCGGGGGCTCCCCACTTGACGCGC------TCCTGGCTCTGCCTCTTGT 41292 || | ||| |||| | |||||||| |||||| ||||||| || | || Sbjct 153 GGAGCGGCCGTT-GGGGTCGCCCCACTTCACGCGCGTCTTGTCCTGGC---GCGCCGTGC 98 Query 41293 CGGGTGCCATGTAGGCTTCGATCCCGATCACGGGGATGATGCCAGCCTCGGTCGCGGCCT 41352 | || | || ||| || |||| ||||| | || ||| || || |||| | || Sbjct 97 CCGGCGTCAGGTACGCCTCGACGCCGATGATCGGCTTGACCCCGTGCTTCTTCGCCGTCT 38 Query 41353 TGTAGAACTCGTAGG 41367 | |||| ||||||| Sbjct 37 TCCAGAAGTCGTAGG 23 >seq59305 Length=503 Score = 82.4 bits (90), Expect = 2e-11 Identities = 84/110 (76%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 39093 AGCGCAGCCGCCATGTACTCGGCCGGGTAGTGCGTCTTCAACCACGCCGTGCGGTACGCG 39152 ||| | || |||||| | ||||| ||||| ||||||| ||| || || |||| | Sbjct 324 AGCACCGCGGCCATGAAGGGCGCCGGATAGTGGGTCTTCAGCCAGGCGGTCTGGTAGGAC 383 Query 39153 ATGAGTCCGTACGCCGCCGAGTGCGCCTTGTTGAAGGCGTAGCCAGCGAA 39202 | || || || ||||||||||||| |||||||||| ||||||| ||||| Sbjct 384 ACCAGGCCATAGGCCGCCGAGTGCGACTTGTTGAAGCCGTAGCCGGCGAA 433 >seq35294 Length=305 Score = 80.6 bits (88), Expect = 9e-11 Identities = 100/137 (73%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 39288 TTGGCCAGAACCTCGGGCTTCTTCTTGCCCATCGCCCGGCGAAGCAGGTCGGCCTGACCC 39347 ||||||| | || ||||||||||| ||||| || || || |||| ||| ||| ||| Sbjct 277 TTGGCCATCTCTTCAGGCTTCTTCTTACCCATGGCGCGACGCAGCATGTCCGCCCCGCCC 218 Query 39348 AGGGTGTACCCGGCCATGACCTGTGCAACCTTCTGCACCTGCTCCTGGTAGATGATCAAC 39407 || || || |||| || |||||| |||| || | ||||| |||||||| | ||| | Sbjct 217 AGCGTATAGCCGGACAGGACCTGGGCAATCTGCATGACCTGTTCCTGGTACAGGATAATG 158 Query 39408 TGGAATGTCGGGTCCAG 39424 | | ||||| ||||| Sbjct 157 CCGTAGGTCGGCTCCAG 141 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 163072085495400