Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20arachidis_20[genbank_20GCA_5F001013415.1_202015-05-26] 130,300 sequences; 87,617,276 total letters Query= NC_021344.2 Length=176227 Score E Sequences producing significant alignments: (Bits) Value seq33499 396 3e-105 seq31280 269 3e-67 seq38626 140 4e-28 seq103771 127 2e-24 seq62284 123 3e-23 seq36028 100 3e-16 >seq33499 Length=26748 Score = 396 bits (438), Expect = 3e-105 Identities = 593/837 (71%), Gaps = 4/837 (0%) Strand=Plus/Minus Query 77990 TTACGGGAATCGAAAATCACTTTACCAGCGTAATCCGAACCCATGACAGTCTGAGGTACA 78049 ||||| | ||| | ||||| ||||| |||| || ||| || || || || |||||| Sbjct 24093 TTACGAGCATCCATAATCAACTTACCTTCGTAGTCACCACCAATAACTGTTTGTGGTACA 24034 Query 78050 CCACCTTTATAACGGGTAGAGTAGTTCATCTGTACATCCAGTTCTTTCCAGCGGATCATT 78109 ||||||| || || ||||| | || || |||| |||||| || ||||| Sbjct 24033 CCACCTTGGTATTTCTCAGCACGTTTCATTTCAACTTCGAGTTGTTTCCAACGAATCATC 23974 Query 78110 TCTGGGGTAATTGTGCGTTGCAGTACGGCGTTAGCCTCCGCTTCTTTCTTCGCTGCGTAC 78169 ||||| || ||||| |||| || |||||| || |||||||| | || || || Sbjct 23973 TCTGGAGTGATTGTTTTCTGCAACACACTGTTAGCTTCAGCTTCTTTTTGAGCAGCATAT 23914 Query 78170 AGTTTAGCATCAGCATCACGTTCGTTGGCAATCGCATCGTTTTCACGCGCCTGACGATTT 78229 | ||||||||| ||||| |||||||| || || || || | ||| || | |||| Sbjct 23913 AATTTAGCATCTGCATCTCGTTCGTTTGCCTGGGCTTCATTATTACGGGCTTCTCGATCA 23854 Query 78230 GCTTCCGCTTGTTTTACCTG-TTGCTGTGAAGTCTGTT-CGACTTTTGCCAGTTCCGCAC 78287 || || || | | ||| ||| |||||||| ||| | | ||| |||| || || Sbjct 23853 GCCTCTGCCT-TCTTAACTGCTTGCTGTGTT-TCTTTAGCTACTCGGTCCAGATCAGCCT 23796 Query 78288 GAGCGGCGTTAACCTGTTCTTCACGAATTTTCGTGTTAGTTACCTGTTCCATGATAACAT 78347 | || ||||||||||||||||||||||| || || || |||||||| | |||||| |||| Sbjct 23795 GTGCTGCGTTAACCTGTTCTTCACGAATCTTTGTATTTGTTACCTGCTTCATGATTACAT 23736 Query 78348 CCGGCAGGGTGATATCCTGCAAGAATACCTGTTTCACGGTGTAACCGTAAGGACGCGCAT 78407 | |||| ||||||||| |||||||| | | ||| || || ||||| |||||||| || | Sbjct 23735 CAGGCAAGGTGATATCTTGCAAGAAGATTTCTTTTACAGTATAACCATAAGGACGTGCGT 23676 Query 78408 ACTCTTCGACTTCCTGTTGAATTGCGGTCTGCAACTGGTTCTGGATCTTAGCATCAAACA 78467 | |||| | ||| || | || ||||||||| ||| |||| ||| | |||| Sbjct 23675 AGGCTTCAATTTCAGCTTTTACTGAATCCTGCAACTGCGCCTGAATCTCAGCGTTGAACA 23616 Query 78468 GATCCTGTGCTTTTGGAACCGATTTGCCGAACTCGCGAACGGTTGACAGCAGTTTTTCGG 78527 |||||||||||| || || ||||| || ||||| || || || || | || |||| Sbjct 23615 AATCCTGTGCTTTCGGGACTGATTTACCAAACTCTCGGACAGTGGATAAAAGCTTTTGCT 23556 Query 78528 TTACATACTTATCCAGTGCCTGTTCCTGGTCTCCCGCGTTGATGCGGTTGATAGGCGCTT 78587 ||||| |||||||| || || || || || || || || ||||| ||||| || | Sbjct 23555 CAACATATTTATCCAGAGCTTGCTCTTGAGTGCCTGCATTAATTCGGTTCATAGGTGCCT 23496 Query 78588 TGTTACCGTCAAATTGCAGCATAACGGTCATATCAACAGTGGATTTAAACTTATCCTGTG 78647 | ||| ||||| |||| ||||||||||||||| || || ||||||||||||||||| Sbjct 23495 TAGAACCATCAAACTGCAACATAACGGTCATATCCACTGTTGATTTAAACTTATCCTGAC 23436 Query 78648 AAGGAACCTGCAATTTATCGAACTTCTTCGCAATGTCTTTCGTGCTGAAAGTATCGAAAT 78707 || || ||||||||||| | | | || ||||| || |||||||| || || Sbjct 23435 TCGGTACTTGCAATTTATCATATGTTATTTTGATATCTTTTGTACTGAAAGTCTCAAAGC 23376 Query 78708 CAGCCAGCGGGTTTACGATATGGAAACCAGGCAGTACAGGTTTCGGAGAAACCTTACCCA 78767 || | ||||| || | |||||| || ||| |||||| || ||| ||| ||||||| Sbjct 23375 TTGCAAATGGGTTAACCACATGGAACCCTGGCTTTACAGGATTAGGATTAACTTTACCCA 23316 Query 78768 TGAAGGTCTGAGTTTTGACCGTGCCGTCCTGTACTACTGTAAAGGAGTTCGGAACCA 78824 | ||||| || ||||| || || || || || || | || |||| || || ||| Sbjct 23315 TAAAGGTTTGTGTTTTTACTGTACCATCTTGCACGATGATATAGGAATTTAGAGCCA 23259 >seq31280 Length=10079 Score = 269 bits (298), Expect = 3e-67 Identities = 551/810 (68%), Gaps = 23/810 (3%) Strand=Plus/Minus Query 41456 TTCTCTTACGCTGGTGTTCAGCAGTTGATCGGGAAATATCTGTTGCAGGATCGCACAAAC 41515 ||||| ||||| | || | ||| || || ||||||||| | ||| | ||| | Sbjct 1934 TTCTCCTACGCGGCCGTGAAACAGCTGGAAGGCAAATATCTGGTTCAGAACCGCGTCTCC 1875 Query 41516 GGTGACATCTACGAAACCCCGCAATACGCTTTCATGCTGATTGCTATGTGTCTGCA-TCA 41574 ||||| |||||||||| | | || | | | ||| ||| | || || ||| ||| Sbjct 1874 GGTGAGATCTACGAAAGCGCCCAGTTCCTGTACATTCTGGTAGCCGCCTGCCTGTTCTCA 1815 Query 41575 GGACGAACCGCGA---ACCCTGAGCGCATTTAATCATGTGGTTGATTTCTACAACGCAAT 41631 || | | ||||| |||| || | ||| |||| | | ||||||| | || || Sbjct 1814 GG-CTATCCGCGTGCGACCCGGATGG-ATTACATCAAGCG-----TTTCTACGATGCGAT 1762 Query 41632 TTCGGATCGTAAGCTGTCGTTACCTACGCCTATTATGGCTGGTGTGCGTACTCCTACGCG 41691 ||| ||| | || | || ||||| || ||| | || |||||||| || || || Sbjct 1761 TTCCACGTTTAAAATCTCCCTGCCGACGCCAATCATGTCGGGAGTGCGTACGCCAACCCG 1702 Query 41692 TCAGTTTTCCAGTTGCGTAGTGATTGAATCAGGTGATTCACTGGGTTCTCTGAATGCTGT 41751 |||||| | || || ||||||||| || || |||| ||| | || || Sbjct 1701 TCAGTTCAGCTCCTGTGTCCTGATTGAATGTGGCGACAGCCTGGATTCCATCAACGCG-- 1644 Query 41752 AACCTCT---GCGATCGTGAAGTATATTTCACAACGTGCTGGTATCGGTGTAAACGCCGG 41808 ||||| || || ||||| || |||||||||| || ||||| ||| | ||||| || Sbjct 1643 -ACCTCCAGCGCTATTGTGAAATACGTTTCACAACGCGCAGGTATTGGTATTAACGCGGG 1585 Query 41809 ACATATTCGCGCGATGGGTTCTAAAATCCGTGGTGGTGAAGCAGTTCATACAGGCGTGAT 41868 | ||| |||||| |||| || || || |||||||| | ||||| || || Sbjct 1584 TCGTATCCGCGCGCTGGGCAGCCCGATTCGCGGCGGTGAAGCTTTCCATACCGGTTGTAT 1525 Query 41869 CCCGTTCTGGAAACATATTCAGACAGCGGTTAAATCCTGTTCACAAGGTGGTGTTCGTGG 41928 |||||||| || || | ||||||||||| ||||||||||| || || || || ||||| Sbjct 1524 CCCGTTCTACAAGCACTTCCAGACAGCGGTGAAATCCTGTTCGCAGGGCGGCGTCCGTGG 1465 Query 41929 TGGTGCTGCAACGTTGTATTATCCGATCTGGCATTTGGAAGTTGAAAACCTGCTGGTTCT 41988 || || || ||| ||| |||||||| |||||| ||||||| |||| |||| | || || Sbjct 1464 CGGCGCAGCGACGCTGTTCTATCCGATGTGGCATCTGGAAGTAGAAAGCCTGTTAGTCCT 1405 Query 41989 GAAAAACAACAAAGGTGTTGAAAACAACCGTATCCGTCACCTGGATTATGGCGTACAGCT 42048 |||||||||| ||||| ||| ||||| | |||||| |||| || || || ||||| Sbjct 1404 GAAAAACAACCGTGGTGTGGAAGGTAACCGCGTACGTCACATGGACTACGGTGTGCAGCT 1345 Query 42049 TAACGATTTGATGTATAAACGTTTGATGAATAACGATTACATCACTCTGTTCAGCCCTGA 42108 ||| | ||||||| | || || |||| ||| ||||||| ||||| ||||| Sbjct 1344 CAACAAAATGATGTACCAGCGCCTGCTGAAGGGCGAGGACATCACGCTGTTTAGCCCGTC 1285 Query 42109 TGTTGCTAACGATCGTCTGTATGATGCGTTCTATCAAGCGGATCAGACTGAATTCGAAGA 42168 | | || | | | ||||| |||||||||| | || |||||| ||||| ||| Sbjct 1284 AGACG-TACC--TGGCCTGTACGATGCGTTCTTT---GCCGATCAGGACGAATTTGAACG 1231 Query 42169 ACTGTATACCAGCCTTGAAAAAGACCCGACTGTACGCAAGAAACGTATTAAAGCGGTAGA 42228 || || |||| ||| ||||| | | || ||| | ||| | ||||||||||| Sbjct 1230 TCTTTACACCAAATACGAACAAGACAGCAGCATTCGTAAGCAGCGTGTGAAAGCGGTAGA 1171 Query 42229 TCTGTTCCAGTTGCTTGCACAGGAACGCGC 42258 ||||||| | || | ||||||||||| Sbjct 1170 TCTGTTCTCGCTGATGATGCAGGAACGCGC 1141 >seq38626 Length=1471 Score = 140 bits (154), Expect = 4e-28 Identities = 196/275 (71%), Gaps = 0/275 (0%) Strand=Plus/Plus Query 152302 TCCCGACACAGCGCGATTTGCTGGCGGGTATCGTAGCGAAGCATTTCGCCCGTAATCATA 152361 ||||||| || |||||||||||||| || || || ||||| |||| ||||| | || | Sbjct 668 TCCCGACCCAACGCGATTTGCTGGCCGGGATTGTGGCGAAACATTACGCCCAGCAGCAAA 727 Query 152362 TCCTCCCGAAACATATCGTAGAAGCGCATGATTCCGGTGACATCCACTATCACGATCTGG 152421 |||| || || | || | |||||||| ||| || ||||| ||||||||||| | Sbjct 728 TCCTGCCTCGTGATGTGGTTCAGGCGCATGAGCGCGGCGAGATCCATTATCACGATCTCG 787 Query 152422 ACTATAGCCCGTTCACCCCTTACACTAACTGCTGTCTGGTTGACCTGAAAGGTATGCTGG 152481 | || || ||| ||| ||||||| ||| | || |||||||| |||||| Sbjct 788 ATTACGCGCCTTTCTTCCCCATGTTTAACTGCATGCTGATCGATCTGAAAGGCATGCTGA 847 Query 152482 AGAACGGTTTTAAAATGGGTAACGCGGACATTGAACCGCCTAAATCGATCGGTGTTGCTA 152541 ||||||||||||||||| |||||||| || || ||||| | ||||| | | || | Sbjct 848 CCAACGGTTTTAAAATGGGCAACGCGGAGATCGAGCCGCCCAGGTCGATTGCTACCGCCA 907 Query 152542 CCGCTCTCATGGCGCAGATCACCGCACAGATTGCC 152576 | || | | ||||| |||| || ||| ||||| Sbjct 908 CTGCGGTGACTGCGCAAATCATTGCCCAGGTTGCC 942 >seq103771 Length=482 Score = 127 bits (140), Expect = 2e-24 Identities = 258/378 (68%), Gaps = 5/378 (1%) Strand=Plus/Minus Query 152152 CAGCGGTCGCCCGTTCATACATTGAGTATCGCCACGATCGCGACATTGCCCGTGAACAGA 152211 |||| | ||| || | || || || || || ||||| || || | || || || ||| Sbjct 377 CAGCTGGCGCGCG--CCTATATCGAATACCGTCACGACCGGGATCTGGCGCGCGAGCAGC 320 Query 152212 AAAGCAAGCTGTTCTCTGATATCTCCGGCATGGTGAACCTGTCCAACAAAGAGATCACCA 152271 |||||||| | || || |||| ||||| | | | ||||| | | | || Sbjct 319 GCGGCAAGCTGCACCATGCCATTCGCGGCCTGGTGGAACAGACCAACGCGGCGCTGCTCA 260 Query 152272 ACGAGAACGCGAACAAAGAT-GCAAGGGTATTCCCGACACAGCGCGATTTGCTGGCGGGT 152330 |||| ||||| |||||||| |||| | || |||||| |||||||| ||||||| || Sbjct 259 ACGAAAACGCTAACAAAGACAGCAAAGTGAT-CCCGACGCAGCGCGACCTGCTGGCCGGC 201 Query 152331 ATCGTAGCGAAGCATTTCGCCCGTAATCATATCCTCCCGAAACATATCGTAGAAGCGCAT 152390 ||||| || || |||| |||| | || | || ||| || | || |||||| Sbjct 200 ATCGTGGCCAAACATTATGCCCAGCAGCAGTTGCTGCCGCGCGATGTGGTGCTGGCGCAT 141 Query 152391 GATTCCGGTGACATCCACTATCACGATCTGGACTATAGC-CCGTTCACCCCTTACACTAA 152449 || || || |||||||||||||| || |||| | || ||| ||| ||| Sbjct 140 GAACGTGGGGAGATCCACTATCACGACCTCGACTCACTCTCCCTTCTTCCCGATGTTTAA 81 Query 152450 CTGCTGTCTGGTTGACCTGAAAGGTATGCTGGAGAACGGTTTTAAAATGGGTAACGCGGA 152509 |||| ||| | || ||| | || |||||| | |||| || |||||||||||||| || Sbjct 80 CTGCATGCTGATCGATCTGCACGGCATGCTGACGCACGGCTTCAAAATGGGTAACGCCGA 21 Query 152510 CATTGAACCGCCTAAATC 152527 ||||||||||| ||||| Sbjct 20 GATTGAACCGCCAAAATC 3 >seq62284 Length=976 Score = 123 bits (136), Expect = 3e-23 Identities = 291/430 (68%), Gaps = 12/430 (3%) Strand=Plus/Minus Query 41651 TTACCTACGCCTATTATGGCTGGTGTGCGTACTCCTACGCGTCAGTTTTCCAGTT---GC 41707 ||||| || ||||||||||||||| | ||||| ||| ||||| || ||||| | Sbjct 486 TTACCAACACCTATTATGGCTGGTTTACGTACAAATACTCGTCAATT---CAGTTCTTGT 430 Query 41708 GTAGTGATTGAATC-AGGTGATTCACTGGGTTCTCTGAATGCTGTAACCTCTGCGATCGT 41766 || || || |||| ||| || || | | | | ||||| | ||||| ||| | Sbjct 429 GTTGTAAT-GAATGTAGGAGACAGCCTAGACAGTATTAGTGCTGGTAATTCTGCAATCAT 371 Query 41767 GAAGTATATTTCACAACGTGCTGGTATCGGTGTAAACGCCGGACATATTCGCGCGATGGG 41826 ||| |||||||| | ||||| | |||||||| || | |||| || | || Sbjct 370 GAAATATATTTCTAAGAAAGCTGGACTAGGTGTAAATTATGGTCGCGTTCGTGCAGTAGG 311 Query 41827 TTCTAAAATCCGTGGTGGTGAAGCAGTTCATACAGGCGTGA-TCCCGTTCTGGAAACATA 41885 ||| |||| ||||||||||| ||||| || |||||| ||| ||| ||||| || Sbjct 310 TTCAGAAATTCGTGGTGGTGATGCAGTCCACACAGGCTTGATTCCATTTCTGTCGGCAGT 251 Query 41886 TTCAGACAGCGGTTAAATCCTGTTCACAAGGTGGTGTTCGTGGTGGTGCTGCAACGTTGT 41945 || | | | ||| |||||||||| || ||||||||||| ||||| || ||||| | Sbjct 250 GGCA-AAAACTGTT-AATCCTGTTCTCAGGGTGGTGTTCGAGGTGGAGCAGCAACTGTAC 193 Query 41946 ATTATCCGATCTGGCATTTGGAAGTTGAAAACCTGCTGGTTCTGAAAAACAACAAAGGTG 42005 | | ||| | ||||||| || ||||| | || | || ||| |||| || |||||| Sbjct 192 ACTTTCCACTATGGCATTACGAGTTTGAAGATCTTGTAGTACTG-AAAATAATAAAGGTA 134 Query 42006 TTGAAAACAACCGTATCCGTCACCTGGATTATGGCGTACAGCTTAACGATTTGATGTATA 42065 |||| | ||| | | || | |||||| | | ||| ||||| | ||||| Sbjct 133 CAGAAACCTCACGTGTAAGACAGTTAGATTATTGTTTTCAGATTAACAAAACTTTGTATC 74 Query 42066 AACGTTTGAT 42075 ||||||| || Sbjct 73 AACGTTTAAT 64 >seq36028 Length=2231 Score = 100 bits (110), Expect = 3e-16 Identities = 119/159 (75%), Gaps = 2/159 (1%) Strand=Plus/Plus Query 44276 TATATCGAACACTTAACCGACCAACGTATGCGAGCGGTTGGGTTACAGTCT-CCGTTTAA 44334 ||||||||| || | ||| || ||||||| |||||||| | | ||| ||||| | Sbjct 795 TATATCGAATACATCACCAACATTCGTATGCAGGCGGTTGGCCTCGA-TCTGCCGTTCGA 853 Query 44335 ACCGAGTCCTAACCCGTATCCGTGGATGAACAAATGGTTGAAGTCTGACAACGTTCAGGT 44394 | || | | |||||| ||| ||||| ||| ||| || ||| || ||||||||||| Sbjct 854 AACGCGCTCGAACCCGATTCCCTGGATCAACGCCTGGCTGGTGTCCGATAACGTTCAGGT 913 Query 44395 AGCCCCGCAAGAGGTTGAAGTAAGTTCTTACCTGGTTGG 44433 |||||||| || || ||||| |||||||||||||| || Sbjct 914 TGCCCCGCAGGAAGTGGAAGTCAGTTCTTACCTGGTGGG 952 Score = 93.3 bits (102), Expect = 5e-14 Identities = 199/295 (67%), Gaps = 2/295 (1%) Strand=Plus/Plus Query 43448 CAACTGTCATTCTTCTGGCGACCGGAAGAAGTGGATCTGTCGATTGACCGTATGCAGTAT 43507 || || || ||||||||||| || |||||||| ||| | || || || || | || Sbjct 3 CAGCTTTCGTTCTTCTGGCGTCCTGAAGAAGTCGATGTCTCACGCGATCGCATCGACTAC 62 Query 43508 GCGAAAATGCCGGAACATGAAAAAATCATTTTCGATTCTAACCTGCAATATCAAACCCTA 43567 | |||| || |||||||| || ||| |||||| |||| || || || Sbjct 63 CAGGCCCTGCCCGATCATGAAAAGCATATCTTCATCAGCAACCTGAAATACCAGACGTTA 122 Query 43568 CTGGATACCATTCAGGGACGCGGCCCTAACCTTGCATTTCTCCCGATTGCCTCTGATGTA 43627 ||||| | |||||||||||| |||| ||| | ||| | || ||| | ||| ||| Sbjct 123 CTGGACTCGATTCAGGGACGCAGCCCGAACGTGGCACTGCTGCCGCTGATCTC-GATTCC 181 Query 43628 TCAA-TGGAAACGTGGATCGAAACATGGGCGTTCAGTGAAACAATTCACAGTCGCAGTTA 43686 || ||||||| ||||| ||||| ||||||||| ||||| || ||| |||| || Sbjct 182 GGAACTGGAAACCTGGATAGAAACCTGGGCGTTCTCCGAAACGATCCACTCTCGCTCGTA 241 Query 43687 TACGCACATTCAGCGCAACCTGCATATCGATCCGGCTAAAGAGTTCGACAAAATC 43741 || ||||| |||||| | | ||||||| || | ||| ||| | ||| Sbjct 242 CACCCACATCATTCGCAACATCGTGAACGATCCGTCTGTGGTGTTTGACGATATC 296 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562880113356000