Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20arachidis_20[genbank_20GCA_5F001013415.1_202015-05-26] 130,300 sequences; 87,617,276 total letters Query= NC_021529.2 Length=247511 Score E Sequences producing significant alignments: (Bits) Value seq47353 102 1e-16 seq73890 89.7 8e-13 seq36028 86.0 1e-11 >seq47353 Length=5297 Score = 102 bits (112), Expect = 1e-16 Identities = 141/195 (72%), Gaps = 8/195 (4%) Strand=Plus/Plus Query 86127 AACATCGTATGGGAACAATGCACCAGCGTTGATCTTCGCTTCGCCTTTTTGAAGTGATTC 86186 |||||| |||||||| ||||||||||| || | ||| ||||| |||||| ||||| ||| Sbjct 1760 AACATCATATGGGAATAATGCACCAGCATTTACCTTAGCTTCACCTTTTGAAAGTGCTTC 1819 Query 86187 GATGTAGTTTGTGTAACGAGTTTCA--GCGTT--ACGACCAAATGCTTTTTGATAACGAG 86242 | ||| ||||||||||||| |||| | || | | || |||||| | Sbjct 1820 CAAGTACGCACGGTAACGAGTTTCATCACGTTTCATGAACGCAGGC----AAATAACGTG 1875 Query 86243 CAGACGCTACAGAAGGCAACTTACCGAAGTCGATTGCATCCCAATCTTTCGCACACATCT 86302 | || || || || | ||| ||| | || ||| ||||||| | || |||||||||| Sbjct 1876 AACTTGCAACTGATGGTAGCTTGCCGTATTCAATTTCATCCCATTGATTTGCACACATCT 1935 Query 86303 TTTGTTCAACAGTGT 86317 |||||||||||||| Sbjct 1936 GTTGTTCAACAGTGT 1950 >seq73890 Length=809 Score = 89.7 bits (98), Expect = 8e-13 Identities = 102/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 237494 TGTGAACATCACTTCGTGACAATTGATGGTAAAGCAACAGTTGCTTACATCCCTAACAAG 237553 |||||||| |||||||||| || || || ||||| || || || || |||||||| | Sbjct 653 TGTGAACACCACTTCGTGATCATCGACGGCAAAGCCACCGTGGCCTATATCCCTAAAGAC 594 Query 237554 AAAGTTCTTGGCTTGTCTAAGATGAATCGCATTGTTGAGTATTTCAGTCGTCGCCCTCAA 237613 || || ||||| |||| ||||| || || || ||| ||| ||| | || || || Sbjct 593 AAGGTAATTGGCCTGTCGAAGATCAACCGTATCGTTCAGTTCTTCGCCCAGCGTCCGCAG 534 Query 237614 GTGCAAGAGCGTTTAAC 237630 ||||| ||||||||||| Sbjct 533 GTGCAGGAGCGTTTAAC 517 >seq36028 Length=2231 Score = 86.0 bits (94), Expect = 1e-11 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 65910 GTAAACGCGCTTGAAGCAATTCGTTTCTATGTTTCATTTGCATGTACTTTCAACTTTGCT 65969 || || ||||| ||||| || || ||||| || ||||| || |||| |||||| Sbjct 474 GTCAATGCGCTGGAAGCGATCCGCTTCTACGTCAGCTTTGCCTGCTCTTTTGCGTTTGCT 533 Query 65970 GAACAAGGCATCATGGAAGGCAACGCGAAAGTAATGAAACTGATTGCACGTGATGAGCAG 66029 || | || | |||||||||||||| ||| | || || ||||||||||| || || Sbjct 534 GAGCGAGAACTGATGGAAGGCAACGCCAAAATCATCAAGCTGATTGCACGCGACGAAGCT 593 Query 66030 CTTCACTTGAAAGGCACACAAGCGTTAATCAATATCTGGCACTCTGGTAAAGATGATCCA 66089 || ||| ||| ||||| || | | ||| | || | | ||| |||| ||||| Sbjct 594 CTGCACCTGACCGGCACCCAGCACATGCTGAATCTGCTGCGCACCGGTGAAGACGATCCT 653 Query 66090 GAAATGGTAGAAATTGC 66106 |||||| ||||||||| Sbjct 654 GAAATGAAAGAAATTGC 670 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 790617381148000