Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20arachidis_20[genbank_20GCA_5F001013415.1_202015-05-26] 130,300 sequences; 87,617,276 total letters Query= NC_021531.1 Length=223989 Score E Sequences producing significant alignments: (Bits) Value seq35690 282 6e-71 seq28361 194 2e-44 seq60516 185 1e-41 seq2347 174 2e-38 seq43510 145 1e-29 seq51075 123 4e-23 >seq35690 Length=1912 Score = 282 bits (312), Expect = 6e-71 Identities = 409/573 (71%), Gaps = 6/573 (1%) Strand=Plus/Plus Query 87537 GAAACGAAAAATCTTATCTTCGCCACCGGCGAAGCGGGGTGTGGGAAAACGTTTATTTCC 87596 ||||| ||| | |||||||||||||| ||||||||||| || || ||||| | ||| Sbjct 1293 GAAACAAAACAGCTTATCTTCGCCACGGGCGAAGCGGGCTGCGGCAAAACCTGGATTAGT 1352 Query 87597 GCCGCATACGCTTGCGAACGTTTGCTGGCCAAAGATATCGAACGTATCATCGTCACTCGT 87656 || || | || || || | || |||||||| | || ||||| || || Sbjct 1353 GCTGCGAAAGCAGCAGAGGCCCTGATTCATAAGGATATCGACAGGATTATCGTTACGCGC 1412 Query 87657 CCGGTGCTCTCCGCAGATGAAGATTTAGGCTTCCTGCCCGGCGACGTTGCCGAAAAATTC 87716 |||||||| || ||||| ||| | || ||||| ||||| || | | || |||||| Sbjct 1413 CCGGTGCTACAGGCGGATGAGGATCTGGGATTCCTTCCCGGTGATATCTCAGAGAAATTC 1472 Query 87717 GCCCCGTACTTCCGCCCTGTTTATGACGTTCTTCAAAAACGTCTCGGT--AGCCGCTACC 87774 ||||| || |||||||| ||||| ||| |||| |||||||| || | || || Sbjct 1473 GCCCCCTATTTCCGCCCGGTTTACGACATTCTGGTTAAACGTCTTGGCGCATCCTTTA-- 1530 Query 87775 TGCAATACTGCCTTAAGCCCGGTATCGACAAAGTGGAGATTGCTCCTTTTGCGTACATGC 87834 ||||||| || || || | |||| ||||||||| ||||| |||||||| || |||| Sbjct 1531 TGCAATATTGTCTGCGTCCGGAAATCGGCAAAGTGGAAATTGCGCCTTTTGCCTATATGC 1590 Query 87835 GTGGCCGCAGTTTCGAAAATGCGGTTGTCATTTTAGATGAAGCTCAGAACACTACTGCTC 87894 | ||||||| || ||||||||||| || ||| | || ||||| |||||| || ||| Sbjct 1591 GCGGCCGCACCTTTGAAAATGCGGTAGTGATTCTGGACGAAGCGCAGAACGTGACGGCTG 1650 Query 87895 AGCAGATGAAGCTCTTCCTGACACGTATCGGGGAGAACTGT-ATCGTTATCGTAAACGGT 87953 ||||||||| | |||||||| || | || || || ||| | || || || ||||| Sbjct 1651 CGCAGATGAAAATGTTCCTGACCCGCCTTGGCGA-AAATGTCACGGTGATTGTTAACGGC 1709 Query 87954 GACGTCACACAGTGCGACTTGCCCAAAGGGGTGAAGTCTGGACTGGCCGACGCGTTGACC 88013 || | || |||||||| |||||| |||||| || || || || |||||| || | Sbjct 1710 GATATTACCCAGTGCGATTTGCCCGCTGGGGTGCCTTCCGGTCTCGCAGACGCGCTGGCG 1769 Query 88014 CGTTTCGAGGAAGACGATTTAGTTGGCGTCGTTCGTTTTACGAAAGACGACTGTGTGCGC 88073 |||||||| || ||||| | |||||| | || ||||| ||||| || |||||||| Sbjct 1770 CGTTTCGAAGAGGACGAGATGGTTGGCATTGTCCGTTTCGGCAAAGAGGATTGTGTGCGT 1829 Query 88074 TCTTTGCTTTGTCAGCGTGCGTTGAAAGCGTAC 88106 || ||| |||||||| | || | |||||| Sbjct 1830 TCCGCGCTGTGTCAGCGCACTCTGCACGCGTAC 1862 >seq28361 Length=3781 Score = 194 bits (214), Expect = 2e-44 Identities = 225/298 (76%), Gaps = 4/298 (1%) Strand=Plus/Minus Query 98895 ATGAAACAGTATCAAGATTTAATG-GCTGAAGT-CTTTGCGAAAGGTACGCCGAAGAAAG 98952 ||||||||||||| || |||||| ||| | || || |||| || || || || | Sbjct 2732 ATGAAACAGTATCTGGACTTAATGCGCT-ACGTGCTGAACGAA-GGCACACCAAAATCTG 2675 Query 98953 ACCGTACCGGTACAGGCACGCTTTCTATCTTCGGCCACCAGATGCGTTTCAACTTGCAAG 99012 ||||||||||||||||||||||||| || || || |||||||||||||| || |||| | Sbjct 2674 ACCGTACCGGTACAGGCACGCTTTCAATTTTTGGTCACCAGATGCGTTTTAATCTGCAGG 2615 Query 99013 AAGGTTTCCCGCTGGTAACGACCAAGCGTTGCCACCTGCGCTCTATTATCCATGAACTGC 99072 | || || || ||||| ||||| || ||||| | ||||| || || ||||| |||| Sbjct 2614 ATGGCTTTCCCCTGGTCACGACTAAAAAGTGCCATGTTCGCTCCATCATTCATGAGCTGC 2555 Query 99073 TGTGGTTCCTGAAAGGCGACACCAATATCCAGTACCTGAAAGATAATGGTGTAACCATTT 99132 ||||||| ||| |||| |||||||| || ||||||||||| || ||| | || | Sbjct 2554 TGTGGTTTCTGCAAGGGGACACCAACATTGGTTACCTGAAAGAAAACAATGTCTCTATCT 2495 Query 99133 GGGACGAATGGGCGGACAAAAATGGCGACCTCGGTCCGGTATACGGTAAGCAGTGGCG 99190 |||| || ||||| || | | ||| | || || ||||||||||| || |||||||| Sbjct 2494 GGGATGAGTGGGCAGATGAGCAGGGCAATCTGGGACCGGTATACGGCAAACAGTGGCG 2437 Score = 167 bits (184), Expect = 3e-36 Identities = 230/319 (72%), Gaps = 2/319 (1%) Strand=Plus/Minus Query 99591 TCTTGTCAGCTCTATCAGCGTAGTGCCGACGTGTTCTTGGGTGTGCCGTTTAACATCGCG 99650 || |||||||| || |||||| |||| | ||| |||| |||||||||||||||| Sbjct 2255 TCCTGTCAGCTTTACCAGCGTTCCTGCGACATTTTCCTGGGGCTGCCGTTTAACATCGCC 2196 Query 99651 TCGTATGCTCTACTGATTCACATGTTTGCACAGCAG-GCGAATATGGCGGTGGGCGATTT 99709 ||||| || ||| | || ||| | || || ||| |||| | ||| ||| || || || Sbjct 2195 AGCTATGCGCTGCTGGTGCATATGGTCGCGCAACAGTGCGA-TCTGGAGGTCGGTGACTT 2137 Query 99710 CGTCTGGACCGGCGGTGATGTGCATCTGTATTCTAACCATCTGGAACAGGCACGTACTCA 99769 |||||||||||||| ||| ||| || || ||||| ||||| ||||| || || Sbjct 2136 TGTCTGGACCGGCGGCGATACGCACCTTTACAGCAACCACCTGGAGCAGGCGCGCCTGCA 2077 Query 99770 GTTAGGTCGTACTCCGCGTGCGTTGCCTAAGCTGATTATCAAACGTAAGCCGGACTCTAT 99829 | || ||||||||||| || |||||| | || ||||| ||||| | ||| | Sbjct 2076 ACTGACGCGCGAACCGCGTGCGTTACCGAAGCTGGTGATTAAACGCAAGCCTGCCTCGCT 2017 Query 99830 CTTCGACTATAAGTTCGAAGATTTTGATATCGAAGGCTACGACCCACACCCGGCTATTAA 99889 || |||||| ||||| |||||||| || ||||| ||||| || || || || || || Sbjct 2016 GTTTGACTATCGTTTCGACGATTTTGAGATTGAAGGTTACGATCCGCATCCCGCCATCAA 1957 Query 99890 AGCACCGGTGGCGATATGA 99908 ||| ||||| ||| | ||| Sbjct 1956 AGCGCCGGTTGCGGTCTGA 1938 >seq60516 Length=573 Score = 185 bits (204), Expect = 1e-41 Identities = 188/245 (77%), Gaps = 0/245 (0%) Strand=Plus/Plus Query 98946 AAGAAAGACCGTACCGGTACAGGCACGCTTTCTATCTTCGGCCACCAGATGCGTTTCAAC 99005 ||| ||||||||||||| || ||||| | ||||| |||||||||| |||||| Sbjct 83 AAGGAAGACCGTACCGGCACCGGCACCTACAGCGTGTTCGGTTACCAGATGCGCTTCAAC 142 Query 99006 TTGCAAGAAGGTTTCCCGCTGGTAACGACCAAGCGTTGCCACCTGCGCTCTATTATCCAT 99065 || || || ||||| | || || |||||| ||||||||| || || |||||| Sbjct 143 CTGGCCGATGGCTTCCCCATCGTCACCACCAAGAAGTGCCACCTGAAGTCCATCATCCAT 202 Query 99066 GAACTGCTGTGGTTCCTGAAAGGCGACACCAATATCCAGTACCTGAAAGATAATGGTGTA 99125 ||||| |||||||||||| | || || ||||||||| |||||||||| || || || || Sbjct 203 GAACTACTGTGGTTCCTGCAGGGTGATACCAATATCAAGTACCTGAAGGACAACGGCGTC 262 Query 99126 ACCATTTGGGACGAATGGGCGGACAAAAATGGCGACCTCGGTCCGGTATACGGTAAGCAG 99185 | ||| |||||||| ||||| ||| | || ||| ||||||| ||||||||||| | ||| Sbjct 263 AGCATCTGGGACGAGTGGGCCGACGAGAACGGCAACCTCGGCCCGGTATACGGCTACCAG 322 Query 99186 TGGCG 99190 ||||| Sbjct 323 TGGCG 327 >seq2347 Length=4848 Score = 174 bits (192), Expect = 2e-38 Identities = 165/211 (78%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 98980 TCTTCGGCCACCAGATGCGTTTCAACTTGCAAGAAGGTTTCCCGCTGGTAACGACCAAGC 99039 |||||||| |||||||| | ||| || || || || || || ||||| || |||||| Sbjct 2038 TCTTCGGCTACCAGATGAGATTCGACCTGGCCGAGGGCTTTCCCCTGGTCACCACCAAGA 1979 Query 99040 GTTGCCACCTGCGCTCTATTATCCATGAACTGCTGTGGTTCCTGAAAGGCGACACCAATA 99099 ||||| ||| | || || ||||| |||||||||||||||||| | ||||| ||||||| Sbjct 1978 AATGCCATCTGAGATCCATCATCCACGAACTGCTGTGGTTCCTGCAGGGCGAGACCAATA 1919 Query 99100 TCCAGTACCTGAAAGATAATGGTGTAACCATTTGGGACGAATGGGCGGACAAAAATGGCG 99159 ||| |||||||| || ||||| || |||| |||||||||||||| ||| | || || | Sbjct 1918 TCCGCTACCTGAAGGACAATGGCGTGTCCATCTGGGACGAATGGGCCGACGAGAACGGTG 1859 Query 99160 ACCTCGGTCCGGTATACGGTAAGCAGTGGCG 99190 | || || ||||| ||||| | |||||||| Sbjct 1858 AGCTGGGACCGGTCTACGGCTACCAGTGGCG 1828 >seq43510 Length=3912 Score = 145 bits (160), Expect = 1e-29 Identities = 183/249 (73%), Gaps = 2/249 (1%) Strand=Plus/Minus Query 98952 GACCGTACCGGTACAGGCACGCTTTCTATCTTCGGCCACCAGATGCGTTTCAACTTGCAA 99011 ||||| ||||| || ||||||| | |||||| |||||||||||| || | | Sbjct 1160 GACCGCACCGGCACCGGCACGCGCAGCGTGTTCGGCTGGCAGATGCGTTTCGACCTCAAC 1101 Query 99012 GAAGGTTTCCCGCTGGTAACGACCAAGC-GTTGCCACCTGCGCTCTATTATCCATGAACT 99070 || || ||||| ||||| || |||||| | ||| |||||||||| || | || || | Sbjct 1100 GACGGCTTCCCCCTGGTCACCACCAAGAAGCTGC-ACCTGCGCTCGATCGTGCACGAGTT 1042 Query 99071 GCTGTGGTTCCTGAAAGGCGACACCAATATCCAGTACCTGAAAGATAATGGTGTAACCAT 99130 ||||||||||||||| ||||| ||||| ||| || || || || || || | ||| Sbjct 1041 GCTGTGGTTCCTGAAGGGCGAGACCAACATCGCCTATCTCAAGGACAACAAGGTCAGCAT 982 Query 99131 TTGGGACGAATGGGCGGACAAAAATGGCGACCTCGGTCCGGTATACGGTAAGCAGTGGCG 99190 |||||||| ||||| || | ||||| ||||| ||||| ||||| ||||||||||| Sbjct 981 CTGGGACGAGTGGGCCGATGCGCAGGGCGAACTCGGCCCGGTGTACGGCAAGCAGTGGCG 922 Query 99191 GGCATGGAC 99199 | ||||| Sbjct 921 GCGCTGGAC 913 >seq51075 Length=376 Score = 123 bits (136), Expect = 4e-23 Identities = 173/236 (73%), Gaps = 5/236 (2%) Strand=Plus/Plus Query 98967 GGCACGCTTTCTATCTTCGGCCACCAGATGCGTTTCAACTTGCAAGAAGG-TTTCCCGCT 99025 |||||||| |||||||| |||||||| ||| || | ||||| ||||||| | Sbjct 39 GGCACGCTGAGCGTCTTCGGCGCGCAGATGCGCTTCGACCTCGCCGAAGGCTTTCCCG-T 97 Query 99026 GGTAACGACCAAGC-GTTGCCACCTGCGCTCTATTATCCATGAACTGCTGTGGTTCCTGA 99084 | ||||||||| | ||| |||||||||| || | || || ||||||||||||||| Sbjct 98 CCTCACGACCAAGAAGCTGC-ACCTGCGCTCGATCGTGCACGAGTTGCTGTGGTTCCTGA 156 Query 99085 AAGGCGACACCAATATCCAGTACCTGAAAGATAATGGTGT-AACCATTTGGGACGAATGG 99143 | ||||| ||||| ||| || || || || || || | |||| |||||||| ||| Sbjct 157 AGGGCGAGACCAACATCGCCTATCTCAAGGACAACAAGGTCAGCCATCTGGGACGAGTGG 216 Query 99144 GCGGACAAAAATGGCGACCTCGGTCCGGTATACGGTAAGCAGTGGCGGGCATGGAC 99199 || || | ||||| ||||| ||||| ||||| |||||||||||| ||||| Sbjct 217 GCCGATGCGCAGGGCGAACTCGGCCCGGTGTACGGCAAGCAGTGGCGGCGCTGGAC 272 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 715469577812000