Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20arachidis_20[genbank_20GCA_5F001013415.1_202015-05-26] 130,300 sequences; 87,617,276 total letters Query= NC_021534.1 Length=47552 Score E Sequences producing significant alignments: (Bits) Value seq38457 183 9e-42 seq34527 174 5e-39 seq29027 129 2e-25 seq35061 122 3e-23 >seq38457 Length=3703 Score = 183 bits (202), Expect = 9e-42 Identities = 162/197 (82%), Gaps = 4/197 (2%) Strand=Plus/Plus Query 46151 GATAGTTTTCGTAAGCGACTTTGCGCTTTTTTAGAAACTGACCACAAAGA-TAAATGCAA 46209 ||||||||||||| ||||||||||| ||||||||||| ||||||||| | ||||||||| Sbjct 2848 GATAGTTTTCGTATGCGACTTTGCGGGTTTTTAGAAACGGACCACAAAAAGTAAATGCAA 2907 Query 46210 ACGA-AGAAATGTATCTGGCAGTAGCCTAGCGGCTAAA-CACCAGCAAGGTCTTCCGACT 46267 |||| || | || | | || |||||| |||| || | | || ||| |||| | Sbjct 2908 ACGATAGTGA-GTTTAAAGTAGCAGCCTAACGGCCAACGCGCTTTCATGGTATTCCAGTT 2966 Query 46268 CCTTGTCAATGAATTCGGCGCATTGCGGCCCTGAGATGTGATTAATAAATCAGGGCACAC 46327 || ||| | |||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 2967 CCATGTAACCGAATCTGGCGCATTGCGGCCCTGAGATGTGATTAATAAATCAGGGCACAC 3026 Query 46328 AACAGGTAAGAGCATTG 46344 ||||||||||||||||| Sbjct 3027 AACAGGTAAGAGCATTG 3043 >seq34527 Length=8391 Score = 174 bits (192), Expect = 5e-39 Identities = 160/197 (81%), Gaps = 4/197 (2%) Strand=Plus/Plus Query 46151 GATAGTTTTCGTAAGCGACTTTGCGCTTTTTTAGAAACTGACCACAAAGA-TAAATGCAA 46209 ||||||||||||| ||||||||||| ||||||||||| ||||||||| | ||||||||| Sbjct 3091 GATAGTTTTCGTATGCGACTTTGCGGGTTTTTAGAAACGGACCACAAAAAGTAAATGCAA 3150 Query 46210 ACGA-AGAAATGTATCTGGCAGTAGCCTAGCGGCTAAA-CACCAGCAAGGTCTTCCGACT 46267 || | || | || | | || |||||| |||| || | | || ||| |||| | Sbjct 3151 ACAATAGTGA-GTTTAAAGTAGCAGCCTAACGGCCAACGCGCTTTCATGGTATTCCAGTT 3209 Query 46268 CCTTGTCAATGAATTCGGCGCATTGCGGCCCTGAGATGTGATTAATAAATCAGGGCACAC 46327 || ||| | |||| ||| |||||||||||||||||||||||||||||||||||||||| Sbjct 3210 CCATGTAACCGAATCTGGCACATTGCGGCCCTGAGATGTGATTAATAAATCAGGGCACAC 3269 Query 46328 AACAGGTAAGAGCATTG 46344 ||||||||||||||||| Sbjct 3270 AACAGGTAAGAGCATTG 3286 >seq29027 Length=2418 Score = 129 bits (142), Expect = 2e-25 Identities = 200/283 (71%), Gaps = 2/283 (1%) Strand=Plus/Minus Query 33166 ATGGCATCTCGAGGAATCAACAAAGTAATCATTTTGGGCACTCTCGGACAAGACCCGGAA 33225 ||||| ||| || | |||||||| || || | || | ||| || || || |||||| Sbjct 1171 ATGGCCAGTCGTGGCGTTAACAAAGTGATTCTTGTCGGGAATCTGGGTCAGGATCCGGAA 1112 Query 33226 GTTAAATATATGCCTTCTGGCGGCGCTGTGTGCAATCTGTCTCTGGCAACATCAGAGCAG 33285 || || ||||| ||| |||||||| ||| | | ||||| || || ||| Sbjct 1111 GTACGTTACATGCCAAATGGTGGCGCTGTCGCCAACATTACGCTGGCTACCTCTGAGAGC 1052 Query 33286 TGGAACGATAAAGCA-ACAGGGGAAAAGAAAGAGCAGACAGAATGGCATCGCGTGGTTAT 33344 ||| ||| || ||| || || ||||| |||||| || |||||||| || || || | Sbjct 1051 TGGCGCGACAA-GCAGACCGGTGAAAACAAAGAGATCACCGAATGGCACCGTGTCGTGCT 993 Query 33345 CTTCGGAAAGCTGGCAGAGGTGGCTGGCGAATACCTGCGCAAAGGCTCTCAGGTGTATGT 33404 || || || ||||| || ||||| || ||||||||||| ||||| |||||||||||| | Sbjct 992 GTTTGGCAAACTGGCGGAAGTGGCGGGGGAATACCTGCGTAAAGGTTCTCAGGTGTATAT 933 Query 33405 AGAAGGAAAATTACGTACTCGCAAATGGACAGATCAAAGCGGT 33447 ||||| | | || || || |||||| ||||| ||||| Sbjct 932 TGAAGGCCAGCTGCGCACCCGTAAATGGCAGGATCAGGGCGGT 890 >seq35061 Length=1748 Score = 122 bits (134), Expect = 3e-23 Identities = 131/172 (76%), Gaps = 1/172 (1%) Strand=Plus/Plus Query 4862 AAGGTTCTGCTTAAGGAGATAACCCTCAAGCATCCAGATTTTATTTACCGCATTCTCTCT 4921 ||| || ||||| || || || || ||||| |||||||||| | || ||||| | | Sbjct 1507 AAGTTTTTGCTTCAGCAGGTAGCCTTCAAGTTGCCAGATTTTACTAACGGCATTGGCACG 1566 Query 4922 GGCAATCTTGCGACCAATTTCAGCGTCGAAATTCTCTGGACTGGCGCAGGCGCTTTCTCC 4981 ||| || | ||||| ||||| ||||| || || || || ||||||||||||||||| || Sbjct 1567 GGCGATGCTACGACCTATTTCTGCGTCAAAGTTTTCCGGGCTGGCGCAGGCGCTTTCACC 1626 Query 4982 TGTCACGGTGAAGCCGTTTTTCAGCACCAAGACGCAAAAGGT-AAGAAATTT 5032 || |||||||| ||||| ||||| |||| || || ||||| || | |||| Sbjct 1627 GGTGACGGTGAATCCGTTCTTCAGAACCAGTACACAGAAGGTCAATAGATTT 1678 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 151809539180400