Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20arachidis_20[genbank_20GCA_5F001013415.1_202015-05-26] 130,300 sequences; 87,617,276 total letters Query= NC_021558.1 Length=37644 Score E Sequences producing significant alignments: (Bits) Value seq62963 176 1e-39 seq76254 82.4 2e-11 >seq62963 Length=1157 Score = 176 bits (194), Expect = 1e-39 Identities = 230/318 (72%), Gaps = 3/318 (1%) Strand=Plus/Plus Query 23266 ATTGCTGAATCGTACAATTCTTATCGGGCGTTTAACCCGCGATCCAGAATTGAAATATAC 23325 |||| | || ||| ||| | ||||| || || ||| || || ||| | ||||| Sbjct 254 ATTGTTAAACCGTGTCATTTTGATCGGACGGTTGACCAAAGACCCGGAACTTCGCTATAC 313 Query 23326 ACCTTCCGGGGTGGCTGTCACCGTCTTTACACTTGCTGTAGATAGACCTTTTACAAATAA 23385 |||| | || |||||||| || ||||| || || || ||| | |||||||| | | Sbjct 314 ACCTGCAGGTGTGGCTGTGACGCAGTTTACGCTGGCAGTGGATCGTCCTTTTACGAGCCA 373 Query 23386 CGG---AGAGCGTGAAGCGGATTTTATTCCCATCGTTGTTTGGAGACAACTCGCAGAGAC 23442 || |||||| |||||||| |||||||| |||| ||||||||||| ||||| || Sbjct 374 GGGTGGAGAGCGCGAAGCGGACTTTATTCCGGTCGTAACATGGAGACAACTGGCAGAAAC 433 Query 23443 GTGCGCCACATATTTACGGAAAGGCCGCCTAACTGCTGTAGAAGGACGAATTCAAACTCG 23502 ||||||| || ||||| ||||| ||| |||| || || ||||| || ||||| || Sbjct 434 TTGCGCCAACTACTTACGTAAAGGTCGCTTAACGGCGGTCGAAGGTCGCATTCAGGTGCG 493 Query 23503 TAACTATGAAAATAACGAAGGGCGAAGAATTTACGTGACAGAAGTTGTAGCAGATAACGT 23562 ||||||||| ||||| ||||| | | | |||||||| |||||| | || ||||| || Sbjct 494 TAACTATGAGAATAATGAAGGTAAACGTGTATACGTGACTGAAGTTATTGCTGATAATGT 553 Query 23563 CCGATTCTTGGAATAGAA 23580 || ||| | |||| ||| Sbjct 554 ACGTTTCCTTGAATCGAA 571 >seq76254 Length=398 Score = 82.4 bits (90), Expect = 2e-11 Identities = 109/149 (73%), Gaps = 2/149 (1%) Strand=Plus/Plus Query 13693 CGATATTCTTGTTAGTAGCAGT-GTCGCACTTTATAGATATGGCCTTAGGAGGATTACAG 13751 |||| | ||||| ||||| | ||| || ||||| ||| ||| | ||| | |||| Sbjct 2 CGATTTCGTTGTT-GTAGCGATCGTCCCATTTTATTGATCAGGCGCTTGGAAGCTTACGT 60 Query 13752 TATTTCCAAAATGCTGTGATCtttttttATTTGGCGAACGAATTGCTATCGATCATCGAA 13811 || ||||| |||| ||| |||||||||||||||||||||| | |||| |||| ||| Sbjct 61 TACTTCCAGGATGCAGTGGTCTTTTTTTATTTGGCGAACGAGCTATTATCCGTCATTGAA 120 Query 13812 AATGTGGGACGCATGGGAGTGCCGATTCC 13840 ||| |||| ||||| | ||||| || Sbjct 121 AATATGGGCAAAATGGGGCTTCCGATGCC 149 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 120152997651600