Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20arachidis_20[genbank_20GCA_5F001013415.1_202015-05-26] 130,300 sequences; 87,617,276 total letters Query= NC_021780.1 Length=59454 Score E Sequences producing significant alignments: (Bits) Value seq40328 178 5e-40 seq60383 170 7e-38 seq76547 109 2e-19 seq98424 107 7e-19 seq129722 89.7 2e-13 >seq40328 Length=627 Score = 178 bits (196), Expect = 5e-40 Identities = 391/581 (67%), Gaps = 4/581 (1%) Strand=Plus/Minus Query 16402 AAAGAGCCGCTTGTCGTCAGCTTTTCCGGCGGCCAGTCGTCCGGCTTTCTTTGTGCATAC 16461 || ||||| | || ||||| ||||| || || ||||| || | || || || | | | Sbjct 609 AAGGAGCCAATGGTTGTCAGTTTTTCAGGAGGTCAGTCATCGGCGTTACTGTGCGATTTC 550 Query 16462 CTGATCGAGAACTACGGCCACAAATATGACCTGCGTTTCGTGTTCGCCAATACGGGCCGG 16521 || | | |||||| | || ||| | | || || || || || |||||||| Sbjct 549 CTTTTGCAAAACTACTCGGATGCTTACGACTTTCACTTTGTTTT-GCGAACACGGGCCGC 491 Query 16522 GAGCACGAAGAAACACTGATCTTCGCCGACAAGGTAGATAAACACTTCGGCCTGAATCTG 16581 || || ||||| | || || || || ||||| ||||||| || ||||| |||||| Sbjct 490 GAACATCCCGAAACTTTAATTTT-GCTGATAAGGTCGATAAACTTTTTGGCCTTAATCTG 432 Query 16582 GTTTGGCTGGAAGGCTACGCCAGTCCGGAACACGGCGTCGGGATGCGCCACCGGGTCGTC 16641 |||||||| |||||| | || || || ||||| || || ||| ||| | ||| Sbjct 431 GTTTGGCTTGAAGGCGTAACAAGCCCCGAGCACGGTGTTGGTATGTCACACAAAATAGTC 372 Query 16642 AGTTTCGAGACGGCCGCGCGGAACGGCGAACCGTTTGAAAGCCTGATAAGCGTCGAGGGC 16701 | || || || || || |||||||||| || |||||| || ||||| ||||| || Sbjct 371 ACATT-GAAACAGCATCGAGGAACGGCGAGCCATTTGAACAACT-ATAAGTGTCGAAGGA 314 Query 16702 ATCCCGAACATTTCGCGCCAGAAGTGCAGCGACTACCTGAAAACGCAGACGATTCGCCAC 16761 || || ||| | || || ||||| ||||| || || | || || || || || | Sbjct 313 ATACCTAACGTATCCCGTCAGAAATGCAGTGATTATTTAAAGACTCAAACAATCAGATCA 254 Query 16762 TGGATGCGAAGCAACGGTCTGGCGCGCCGGGGGTGGAGCGCAAAGACGGCCATCGGGATG 16821 |||||||| ||| || || | | || ||| || || || || || || ||| Sbjct 253 TGGATGCGGGCTAACAACCTAGCCAGGCATGGCTGGTCTGCCAAAACCGCAATAGGCATG 194 Query 16822 CGGTCGGACGAACCAGACCGGGCTAACCCGAACAAAGCGTCGGCCAAGAAATTCAATCTG 16881 || | ||||| || || || || | | || ||||| | ||| || ||| || Sbjct 193 CGCGCTGACGAGCCCGAGCGCGCAGCAATGGATAAGGCGTCCACTAAGCGATACAACTTG 134 Query 16882 GTCTATCCGCTTTGCCATTGGGGGAGTTTCGATAAGCAGGACGTGAACGATTATTGGGAC 16941 || ||||| | || || ||||| ||| ||||||||||| || || |||| |||||| Sbjct 133 GTATATCCATTGTGTCACTGGGGTTCTTTTGATAAGCAGGATGTAAATGATTTTTGGGAT 74 Query 16942 TCCATGCCGTTCAAACTCAACATCCCGCCGCATTACGGGAA 16982 | ||||| |||||||| || ||||| | |||||||| || Sbjct 73 GCAATGCCATTCAAACTGAATATCCCCTCTCATTACGGAAA 33 >seq60383 Length=344 Score = 170 bits (188), Expect = 7e-38 Identities = 199/266 (75%), Gaps = 6/266 (2%) Strand=Plus/Minus Query 42023 CAGCCTGCGCCGCCATCCATTCCCACGTATTTTCGTGCATGGCGCGGTGTTTCATCAGCA 42082 |||||||||||| | | |||||||| || |||||||||| || ||||| ||||| |||| Sbjct 262 CAGCCTGCGCCGTCCTGCATTCCCATGT-GTTTCGTGCATCGCACGGTGCTTCATAAGCA 204 Query 42083 GATATGCGATGACACGGTCGCGGCGCTGCGCGATAGACAGGGTGCCAGTTCCCAACG--C 42140 | |||||||| |||||||| |||||||| | | |||||| || ||||| ||| | Sbjct 203 GGTATGCGATAACACGGTCACGGCGCTGAGACAGAGACAGCGTACCAGT---GTACGGTC 147 Query 42141 TTCACCCGGCTGACGCGGGATGATCATGTTAGGGTCGATGACATGTTTCGGCTTCACGTA 42200 ||| || ||||| ||||| |||| ||| || ||||| || || || || || ||||| Sbjct 146 TTCGCCTGGCTGCACAGGGATAATCAGGTTTGGATCGATAACGTGCTTAGGTTTAACGTA 87 Query 42201 GGCTGGTTTAAAAGTCTTCGTGTTGTAGCCGCTTTCTTTGATCACGCGGCCCTGTACGTT 42260 || || || || | ||| | | |||| ||||||||| |||||||||| ||||| Sbjct 86 AGCAGGCTTGAATCGCATCGCGGTCCAGCCTTCTTCTTTGATAACGCGGCCCTCGACGTT 27 Query 42261 GGGTGCAACGAACGGAGCGACGCGGG 42286 || || ||| | || || ||||||| Sbjct 26 CGGCGCCACGTAAGGTGCTACGCGGG 1 >seq76547 Length=445 Score = 109 bits (120), Expect = 2e-19 Identities = 239/350 (68%), Gaps = 16/350 (5%) Strand=Plus/Plus Query 43694 CGCCAACGCATATGCCGCAGAATAGCAGTTTGAATCGACAACCGCCAGCGAAGGTTTCTC 43753 || || ||| ||||| || ||||| ||||| | ||| || ||||||| || || || || Sbjct 12 CGACAGCGCGTATGCTGCTGAATAACAGTTCGCATCCACGACCGCCATCGTTGGCTTTTC 71 Query 43754 GCCGCGTGTATCAAACATTTCCTGTGACA-GTTCGAAACAGCCTGCTGCTTCCCCGCCGT 43812 | | | | ||| || | || | || ||||| || | ||| | || || | Sbjct 72 GAGGTTGGCG------AGTTC-TGCGGCAAGCTCAAAACAACCGGATGCCTGACCACCAT 124 Query 43813 TCGAGTTAACGTCGTAGATGATAGCCTCGACATCCGGGTCGGCCATCGCTGC-ATTTCGT 43871 | ||| || || | || ||| ||||||||| ||| |||| || || | | | Sbjct 125 TACTGTTCACATCAAAAATAATACGCTCGACATCA---TCGTCCATTGCCGCCAGTGCAG 181 Query 43872 --TGACTGCGGATAAAATTGTACCCCGTCACGTAGCCGTAGTAATACCCGCCATAGCGGT 43929 |||| ||||| || || || || || ||||| || | ||||| || || ||||||| Sbjct 182 CCTGACGACGGATGAAGTTATATCCGGTTACGTACCCAAAATAATAGCCACCGTAGCGGT 241 Query 43930 TAATCAGGGTGCCGTGAATCGGGATGATAGCGAGGCCGTTGGAGAAGGCGAAAGGCTTGT 43989 |||||||| | ||||||||||| ||||| ||| ||||| ||| || ||||| |||| Sbjct 242 TAATCAGGCTACCGTGAATCGGAATGATGGCGGTACCGTTAACGAAAGCAAAAGGTTTGT 301 Query 43990 CCGCAGACGGTCGGCCC-ACGCCGTACGCTGCACACAGGTTTTCGCGCAT 44038 | ||| || | |||| ||||| |||| | | || || ||| |||||| Sbjct 302 CTGCA-CTGGCCTGCCCAACGCCATACGTTTCGCAGAGCGTTTTGCGCAT 350 >seq98424 Length=301 Score = 107 bits (118), Expect = 7e-19 Identities = 203/294 (69%), Gaps = 6/294 (2%) Strand=Plus/Minus Query 30718 ACCAGCATTGCTAACGCCCACCACATAGCGATTCTCCTTAAAAGATTGGGTTGCCGTCGA 30777 |||||||| ||||| |||||||||||||| ||| ||||| |||| ||| |||||||| | Sbjct 292 ACCAGCATGGCTAATGCCCACCACATAGC-TTTCCCCTTAGAAGACTGGATTGCCGTCAA 234 Query 30778 ACGGGGAACGGTCTGGCAGTGACGGGATGCCGCCGAAATTCGCCAGATTGTTGAAGATGG 30837 |||| |||||| |||| ||| ||||||||| |||| |||| ||||| || Sbjct 233 ACGGCGAACGGGACGGCATTGAGATGATGCCGCCATAATTGTCCAGGTTGTTAAAACGAC 174 Query 30838 TATCACAGGCCGTACTG--GTACGCGGGCATCCCGGGTAAGTCTTGAGGATGTAGCCCCC 30895 | | || || | ||| || |||||||| || || ||| ||| | || ||| || Sbjct 173 TCTGGCACGCAG--CTGACGTGCGCGGGCAACCAGGATAAACCTTAATGACCATGCCACC 116 Query 30896 GGCCAAGCCGTCTACGGTACCAAAGATGGTGATGGTGTTCCCGGTATGGGTTTCGATGCC 30955 ||||| ||| || || || | | ||||| |||| || || || ||| | Sbjct 115 GGCCAGTCCGCTGACCACGCCGAA-AACACCAGCGTGTTGTCGGTGTGCGTCTCAATGGC 57 Query 30956 GCGCCGCTCCACGCCGTACACCGGGTCGATCCACTCAATGAAGCCGCCCGCGAA 31009 ||| || || ||| | ||| || ||||| || ||||| ||||||| ||| Sbjct 56 GCGACGTTCAGTACCGCGCTGCGGATCTATCCATTCGATGAAACCGCCCGTGAA 3 >seq129722 Length=886 Score = 89.7 bits (98), Expect = 2e-13 Identities = 113/152 (74%), Gaps = 4/152 (3%) Strand=Plus/Minus Query 38671 GGCCGCTTCGACGATGTCGATGTAGACGCGCTGCGTGATGTTGTTA--AGCTGCATGGCC 38728 || ||| ||| || |||||||| ||||||| ||| | | | | |||| || || Sbjct 156 GGACGCATCGCGGACATCGATGTAAACGCGCT-CGT-ACGCCGATCCCAGCTTCAGTGCA 99 Query 38729 TTGAAGGTGAAGGACATGACCTGCCAGTCGTCTCCTTTCAGTGCATAATCGCCGTCCGGC 38788 ||| ||||| ||||| ||||||||||| || || ||||| ||||| ||||| |||||| Sbjct 98 GAGAACGTGAACGACATAACCTGCCAGTCATCACCCTTCAGCGCATAGTCGCCATCCGGC 39 Query 38789 GCGATGGACACTTTCGGGAAGTAGTAGTTCTT 38820 | | ||||||||||||| |||||| ||| Sbjct 38 TGCAGCGCCACTTTCGGGAAGAAGTAGTCCTT 7 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 189837007617600