Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20arachidis_20[genbank_20GCA_5F001013415.1_202015-05-26] 130,300 sequences; 87,617,276 total letters Query= NC_021783.1 Length=59254 Score E Sequences producing significant alignments: (Bits) Value seq60383 174 6e-39 seq98424 113 2e-20 seq76547 113 2e-20 seq129722 89.7 2e-13 >seq60383 Length=344 Score = 174 bits (192), Expect = 6e-39 Identities = 200/266 (75%), Gaps = 6/266 (2%) Strand=Plus/Minus Query 41712 CAGCCTGCGCCGCCATCCATTCCCACGTATTTTCGTGCATGGCGCGGTGTTTCATCAGCA 41771 |||||||||||| | | |||||||| || |||||||||| || ||||| ||||| |||| Sbjct 262 CAGCCTGCGCCGTCCTGCATTCCCATGT-GTTTCGTGCATCGCACGGTGCTTCATAAGCA 204 Query 41772 GATATGCGATGACACGGTCGCGGCGCTGCGCGATAGACAGGGTGCCAGTTCCCAACG--C 41829 | |||||||| |||||||| |||||||| | | |||||| || ||||| ||| | Sbjct 203 GGTATGCGATAACACGGTCACGGCGCTGAGACAGAGACAGCGTACCAGT---GTACGGTC 147 Query 41830 TTCACCCGGCTGACGCGGGATGATCATGTTAGGGTCGATGACATGTTTCGGCTTCACGTA 41889 ||| || ||||| ||||| |||| ||| || ||||| || || || || || ||||| Sbjct 146 TTCGCCTGGCTGCACAGGGATAATCAGGTTTGGATCGATAACGTGCTTAGGTTTAACGTA 87 Query 41890 GGCAGGTTTAAAAGTCTTCGTGTTGTAGCCGCTTTCTTTGATCACGCGGCCCTGTACGTT 41949 ||||| || || | ||| | | |||| ||||||||| |||||||||| ||||| Sbjct 86 AGCAGGCTTGAATCGCATCGCGGTCCAGCCTTCTTCTTTGATAACGCGGCCCTCGACGTT 27 Query 41950 GGGTGCAACGAACGGAGCGACGCGGG 41975 || || ||| | || || ||||||| Sbjct 26 CGGCGCCACGTAAGGTGCTACGCGGG 1 >seq98424 Length=301 Score = 113 bits (124), Expect = 2e-20 Identities = 204/294 (69%), Gaps = 6/294 (2%) Strand=Plus/Minus Query 30407 ACCAGCATAGCTAACGCCCACCACATAGCGATTCTCCTTAAAAGATTGGGTTGCCGTCGA 30466 |||||||| ||||| |||||||||||||| ||| ||||| |||| ||| |||||||| | Sbjct 292 ACCAGCATGGCTAATGCCCACCACATAGC-TTTCCCCTTAGAAGACTGGATTGCCGTCAA 234 Query 30467 ACGGGGAACGGTCTGGCAGCGACGGGATACCGCCGAAGTTCGCCAGATTGTTGAAGATGG 30526 |||| |||||| |||| || ||| ||||| | || |||| ||||| || Sbjct 233 ACGGCGAACGGGACGGCATTGAGATGATGCCGCCATAATTGTCCAGGTTGTTAAAACGAC 174 Query 30527 TATCACAGGCCGTACTG--GTGCGCGGGCATCCCGGGTAAGTCTTGAGGATGTAGCCCCC 30584 | | || || | ||| ||||||||||| || || ||| ||| | || ||| || Sbjct 173 TCTGGCACGCAG--CTGACGTGCGCGGGCAACCAGGATAAACCTTAATGACCATGCCACC 116 Query 30585 GGCCAAGCCGTCTACGGTACCAAAGATGGTAATGGTATTCCCGGTATGGGTTTCGATGCC 30644 ||||| ||| || || || | | || || |||| || || || ||| | Sbjct 115 GGCCAGTCCGCTGACCACGCCGAA-AACACCAGCGTGTTGTCGGTGTGCGTCTCAATGGC 57 Query 30645 GCGACGTTCCACGCCGTACACCGGATCTATCCACTCGATGAAGCCGCCTGCGAA 30698 ||||||||| ||| | |||||||||||| |||||||| ||||| | ||| Sbjct 56 GCGACGTTCAGTACCGCGCTGCGGATCTATCCATTCGATGAAACCGCCCGTGAA 3 >seq76547 Length=445 Score = 113 bits (124), Expect = 2e-20 Identities = 128/169 (76%), Gaps = 2/169 (1%) Strand=Plus/Plus Query 43560 CTGACTGCGGATAAAATTGTAGCCCGTCACGTAGCCGTAGTAATACCCGCCATAGCGGTT 43619 ||||| ||||| || || || || || ||||| || | ||||| || || |||||||| Sbjct 183 CTGACGACGGATGAAGTTATATCCGGTTACGTACCCAAAATAATAGCCACCGTAGCGGTT 242 Query 43620 AATCAGGGTGCCGTGAATCGGGATGATAGCGAGGCCGTTGGAGAAGGCGAAAGGTTTGTC 43679 ||||||| | ||||||||||| ||||| ||| ||||| ||| || ||||||||||| Sbjct 243 AATCAGGCTACCGTGAATCGGAATGATGGCGGTACCGTTAACGAAAGCAAAAGGTTTGTC 302 Query 43680 CGCCGATGGTC-GGCCAACGCCATACGCTGCACACAGGTTTTCGCGCAT 43727 | | ||| | | ||||||||||||| | | || || ||| |||||| Sbjct 303 TG-CACTGGCCTGCCCAACGCCATACGTTTCGCAGAGCGTTTTGCGCAT 350 >seq129722 Length=886 Score = 89.7 bits (98), Expect = 2e-13 Identities = 113/152 (74%), Gaps = 4/152 (3%) Strand=Plus/Minus Query 38360 GGCCGCTTCGACGATGTCGATGTAGACGCGCTGCGTGATGTTGTTA--AGCTGCATGGCC 38417 || ||| ||| || |||||||| ||||||| ||| | | | | |||| || || Sbjct 156 GGACGCATCGCGGACATCGATGTAAACGCGCT-CGT-ACGCCGATCCCAGCTTCAGTGCA 99 Query 38418 TTGAAGGTGAAGGACATGACCTGCCAGTCGTCGCCTTTCAGTGCATAATCGCCGTCCGGC 38477 ||| ||||| ||||| ||||||||||| || || ||||| ||||| ||||| |||||| Sbjct 98 GAGAACGTGAACGACATAACCTGCCAGTCATCACCCTTCAGCGCATAGTCGCCATCCGGC 39 Query 38478 GCGATGGACACTTTCGGGAAGTAGTAGTTCTT 38509 | | ||||||||||||| |||||| ||| Sbjct 38 TGCAGCGCCACTTTCGGGAAGAAGTAGTCCTT 7 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 189197997897600