Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20arachidis_20[genbank_20GCA_5F001013415.1_202015-05-26] 130,300 sequences; 87,617,276 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq28556 125 6e-24 seq8712 118 1e-21 seq2641 96.9 3e-15 seq58811 87.8 2e-12 seq79110 86.0 6e-12 >seq28556 Length=388 Score = 125 bits (138), Expect = 6e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| ||||| | || || || ||||| || || || ||||| |||||||| | | Sbjct 282 ATGCAAATCTTCGTCAAGACCCTCACCGGCAAGACCATCACGCTAGAAGTAGAGTCTTCG 223 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || || | || | || || |||||||| ||||||||||| || ||||| || || Sbjct 222 GATACCATTGACAATGTCAAGTCGAAGATCCAGGACAAAGAAGGCATTCCTCCGGACCAG 163 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || ||| | ||||| ||||| || |||||||| ||| | | | | || ||||| ||| Sbjct 162 CAGCGTCTCATCTTCGCCGGAAAGCAGCTGGAAGATGGCCGTACCCTCTCTGATTACAAC 103 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 ||||||||||| || || || |||||||| | ||| | || || || Sbjct 102 ATTCAAAAGGAGTCTACCCTTCACTTGGTCCTTCGACTTCGTGGCGG 56 >seq8712 Length=1748 Score = 118 bits (130), Expect = 1e-21 Identities = 467/724 (65%), Gaps = 27/724 (4%) Strand=Plus/Plus Query 139297 TCGCGCTCGTACTTTTCGTAGAGTTCGTCGAATCGTTCACCGTAGGCGTCAGAAAGATCG 139356 || ||||| |||||||||||||| | |||||| ||||||||| ||||| | | Sbjct 62 TCACGCTCATACTTTTCGTAGAGAGCCTCGAATTCCTCACCGTAGCAGTCAGCCAAGCCA 121 Query 139357 CGACACTTGTCAGGACACATGAGCGACCATACGCCGTTCGCCTTGACGCGCCTCATGAAC 139416 | || | || || |||||||| | ||| |||||||| | || ||| |||||||| Sbjct 122 GGGCATTCGTTGGGGCACATGAGAGTCCAGTCGCCGTTCTTTTCAACACGCTTCATGAAC 181 Query 139417 AGATCCGGAATCCACAAAGC---GAACAGCAAATCGCGCGCCTTCTTATCTTCCGAACCC 139473 | ||| |||||||| | ||| ||| || | || || | || || ||| || Sbjct 182 AAATCGGGAATCCATAGAGCAAGGAAGAGGTCA-CGGGCACGAACT--TCCTCCTTGCCG 238 Query 139474 ATGTTACGTTTCATGTTAAGGAAATCAAAAACGTCAGCGTGCCATGGTTCCAGATAGATG 139533 ||| | || || ||||| ||||| ||||| |||||||| || ||||| || ||| Sbjct 239 TGGTTCTTTCGCAGGTCGAGGAACTCAAACACGTCTGCGTGCCACGGCTCCAGGTAAATG 298 Query 139534 GCCATTGCGCC---TTTCCGTTTGCCACCTTGATCGACGTGTCGTACAGCATTATTGAAT 139590 | || || || | | |||||||| || ||||||| || | | || ||||| Sbjct 299 GGCAAAGCACCAGGTCGCTTGTTGCCACCCTGGTCGACGTATCTGGCGGTGTTGTTGAAC 358 Query 139591 ACGCGCAACATCGGCTCCAGACCGCTCGCTGTTCCGTTGGT----GCTACGGATGGGACT 139646 ||||| | ||| || | | ||| | | || |||||||| || | | | | | | Sbjct 359 ACGCGAAGCATGGGAACGACGCCGTTTGAGGTGCCGTTGGTGCCGGCAATGTACGAGCCA 418 Query 139647 GTTGCGAGCTCGGACGTCATGTACATTGATGCCGATTCCGCCGCCAAATTTGGATATTAA 139706 || || || | | || || || | |||||| ||||| | | ||||| || | Sbjct 419 GT----GGCACGAATGCGGTGGACGTTCAGGCCGATGCCGCCAGCCATCTTGGAGATCAT 474 Query 139707 AACGCAATCG-CGTAATGTCTCGTATATACCTCTTATGCTGTCGTCCTGCA-TCGTGACC 139764 |||| || | | || || || || ||| |||||||| |||| || || ||| Sbjct 475 GGCGCA--CGTCTGAGGGTGTCATAGATGCCTTCGATGCTGTCATCCTTCAGTC--GACA 530 Query 139765 AGAAAGCATGACGAAAGTTGCGGTAGTTTCGTGCCGGCTGCAAACAGAGTAGGACTCGCG 139824 || ||||| || || || || | || ||| || || || || || || ||| Sbjct 531 AGGAAGCAGGATGACAGCTGGCATTGTGGCGTACCAGCGTTGAATAGTGTGGGCGAGGCG 590 Query 139825 TGCGTGAACATTTGTTTCGACATCAATTCGTACGTTTCGATGGCGCTCACAATATCCCTT 139884 || ||||| | || ||||||| | | ||| ||||| | | | | | | | | | Sbjct 591 TGGGTGAAGAATTTGCTCGACATGAGGTTGTAGGTTTCCAGGACACGCTCCAGGTTGTCT 650 Query 139885 CCGTGGATACCGACAGAGACTCGCATCAGCATATGTTGGATCCGTTCGGCCACCGCGCCC 139944 || ||||||||| | || ||||| | ||| || || || ||| | | | ||| Sbjct 651 CCCCAGATACCGACGGCAACACGCATAATCATGTGCTGTGGTCGCTCGACAATCTTGCCG 710 Query 139945 TCGAtttttttCAGATA--ACCGTTCTCTAGGGTCTTGTAGCCAAAGTACCTATAGTTGA 140002 | || || ||||| | || ||| || |||||| ||||||||||| ||||||| Sbjct 711 TTGAGCTTGAGGAGATAGGATCG--CTCCAGAGTCTTGAAGCCAAAGTACTGGTAGTTGA 768 Query 140003 AATC 140006 | || Sbjct 769 AGTC 772 >seq2641 Length=263 Score = 96.9 bits (106), Expect = 3e-15 Identities = 145/204 (71%), Gaps = 3/204 (1%) Strand=Plus/Plus Query 24728 ACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACCGACACAGTAGAAACGGT-AAAACA 24786 ||||| || ||||| || || ||||| ||| | | || || | || | || ||||| Sbjct 45 ACCGGCAAGACTATCACCCTTGAAGTTGAATCTTCGGATACTATCGACAATGTCAAAACC 104 Query 24787 AAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAACAACGTTTGATCTTTGCCGGGAA 24846 ||| | |||||||| || || || || |||||||||||||| | |||||||| || || Sbjct 105 AAA--TTCAAGACAAGGAGGGTATTCCCCCCGATCAACAACGACTCATCTTTGCTGGTAA 162 Query 24847 ACAGCTGGAGGATTCGAGAAACATGTCAGATTATAACATTCAAAAGGAATCGACACTACA 24906 ||| |||| ||| ||| | | | ||||| |||||||| || ||||| || || || Sbjct 163 GCAGTTGGAAGATGGTCGAACCCTTGCCGATTACAACATTCAGAAAGAATCTACTCTGCA 222 Query 24907 CTTGGTGTTGCGATTGCGCGGAGG 24930 |||| | ||| | || || || Sbjct 223 TCTGGTTCTTCGACTTCGTGGTGG 246 >seq58811 Length=295 Score = 87.8 bits (96), Expect = 2e-12 Identities = 133/189 (70%), Gaps = 8/189 (4%) Strand=Plus/Minus Query 138799 GCACCATAGTAAATAGTTTCGGCAATCTGCTGATTGAGCAATCGGGCCTCGGCGCTCTCG 138858 ||||| |||| || || ||| ||| | || ||| ||| || || ||| | |||| Sbjct 197 GCACCGAAGTAGATCGTCTCGAAAATATCCTCATTTAGCCGGCGCGCTTCGTCCGACTCG 138 Query 138859 TACGGCATGCGGAGCATCGTGAACGCGTCGGCCAGCCCTTGCACGCCCACTCCGACAGGG 138918 ||||||| || ||||| ||||||| ||||||||||| ||||| |||| |||| || Sbjct 137 AACGGCATCCGCAGCATGATGAACGCATCGGCCAGCCCCTGCACACCCAGACCGATGGGC 78 Query 138919 CGATGGCGCA----GATTTGACGCTTTTGCGGCTTCGATAGGATAATAGTTTACATCGAT 138974 || ||||||| | | |||| || | |||| ||||||||||| | ||||| Sbjct 77 CGGTGGCGCATGTTGCTCCGACG----GGCTTCCTCGACCGGATAATAGTTGATGTCGAT 22 Query 138975 GATTTTGTT 138983 || ||||| Sbjct 21 AATCTTGTT 13 >seq79110 Length=913 Score = 86.0 bits (94), Expect = 6e-12 Identities = 192/287 (67%), Gaps = 6/287 (2%) Strand=Plus/Minus Query 139723 GTCTCGTATATACCTCTTATGCTGTCGTCCTGCATCGTGACCAGAAAGCATGACGAAAGT 139782 || || || ||||| |||||||| |||| ||| | ||||||||| || || | Sbjct 912 GTGTCATAGATACCATCAATGCTGTCCTCCTTCATGTCAATCAGAAAGCAAGATGACATC 853 Query 139783 TGCGGTAGTTTCGTGCCGGCTGCAAACAGAGTAGGACTCGCGTGCGTGAA---CATTTGT 139839 ||||| |||||||| || || || || || || || || | ||||| Sbjct 852 TGCGGCGAAGGGGTGCCGGCGTTGAAAAGCGTTGGGGAGGCATGAGTAAAGTACTTTTGT 793 Query 139840 TTCGACATCAATTCGTACGTTTCGATGGCGCTCACAATATCCCTTCCGTGGATACCGACA 139899 ||||| | ||||||||||||||||| | | |||||| ||||| ||||||||| Sbjct 792 ---GACATGTAGTCGTACGTTTCGATGGCCTTTTCGATATCCTCGCCGTGAATACCGACA 736 Query 139900 GAGACTCGCATCAGCATATGTTGGATCCGTTCGGCCACCGCGCCCTCGAtttttttCAGA 139959 | ||| ||||| | ||| ||||| || ||||| ||| ||| | || || Sbjct 735 GCGACACGCATGATCATGTGTTGTGGGCGCTCGGCAACCTTGCCGTTTATGCGGAGGAGG 676 Query 139960 TAACCGTTCTCTAGGGTCTTGTAGCCAAAGTACCTATAGTTGAAATC 140006 || |||| || |||||| |||||||| || ||||||||| || Sbjct 675 TAGGATCTCTCGAGCGTCTTGAAGCCAAAGAACTGATAGTTGAAGTC 629 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449164829284000