Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20arachidis_20[genbank_20GCA_5F001013415.1_202015-05-26] 130,300 sequences; 87,617,276 total letters Query= NC_022066.1 Length=108297 Score E Sequences producing significant alignments: (Bits) Value seq73449 150 1e-31 seq128899 91.5 1e-13 seq81331 91.5 1e-13 seq61695 91.5 1e-13 seq23453 84.2 2e-11 >seq73449 Length=503 Score = 150 bits (166), Expect = 1e-31 Identities = 219/302 (73%), Gaps = 7/302 (2%) Strand=Plus/Plus Query 95052 CGCCCCCACGGGCAGGAATAACCCGTCACCCATTCCCATGAGCTGCTCGGCTCCGCCCTC 95111 |||||||| |||||||| | ||||||||| || ||||| | || || ||| || Sbjct 129 CGCCCCCATCGGCAGGAAGAGTCCGTCACCCTGACCGATGAGACGATCCGCGCCGGGCTG 188 Query 95112 GTCCAGGATCACCCGGCTATCGGTGAGTGATGCTGTG-GCGAACGAGAGCCTAGACGGCA 95170 || ||||| || ||| ||||||| | || | ||||||| ||| | || |||| Sbjct 189 ATCGAGGATGACGCGGGAGTCGGTGAC-GCTGGTCACCGCGAACGCGAGTCGCGAGGGCA 247 Query 95171 CGTTGGAT-TTGATAAGGCCTGT-GACTACATCCACGGAGGGCCGCTGCGTCGCCAGGAC 95228 |||||| ||||| ||||| || ||| || || |||||||| ||||| ||||| ||||| Sbjct 248 CGTTGGCCCTTGATCAGGCCCGTCGACGACGTCGACGGAGGGACGCTGGGTCGCGAGGAC 307 Query 95229 GAGATGAATACCGGCTG-CGCGCGCCTTCTGGGCGATGCGGACAATGTTGGCCTCGACTT 95287 ||| || || | |||| | || || ||||| ||||||||| || | ||||||| | Sbjct 308 GAGGTGGATGGCCGCTGGCTCGGGCGAGCTGGGTGATGCGGACGATCGAGTCCTCGACGT 367 Query 95288 CTTTCTTGTAGCCGCCCATCATGAGGTCTGCGAGTTCGTCGACCACTACCACGATGTAGG 95347 | | | || |||||||||||||| ||||| |||||||| || |||| | ||||| Sbjct 368 CGCGC--GGCGCGACCCATCATGAGGTCGGCGAGCTCGTCGACGACGACCAGCAGGTAGG 425 Query 95348 GG 95349 || Sbjct 426 GG 427 >seq128899 Length=508 Score = 91.5 bits (100), Expect = 1e-13 Identities = 132/186 (71%), Gaps = 3/186 (2%) Strand=Plus/Minus Query 95166 CGGCACGTTGGATTTGATAAGGCCTGTGACTACATCCACGGAGGGCCGCTGCGTCGCCAG 95225 ||| | ||| | ||||| ||| |||| || || || ||||| ||||||||||||| Sbjct 486 CGGGAAGTTCGCCTTGATCGTGCCGGTGATGACGTCGACCGAGGGGCGCTGCGTCGCCAT 427 Query 95226 GACGAGATGAATACCGGCTGCGCGCGCCTTCTGGGCGATGCGGACAATGTTGGCCTCGAC 95285 || || || || ||||| ||||||||| ||||||||| ||| | || | |||| Sbjct 426 GATGACGTGGATGCCGGCGGCGCGCGCCATCTGGGCGAGGCGCTGGACCGTGCCTTCGAT 367 Query 95286 TTCTTTCTTGTAGCCGCCCATCATGAGGTCTGCGAGTTCGTCGACCACTACCACGATGTA 95345 || |||| | | ||||||| ||||| || | ||||||| | || |||||||| Sbjct 366 GTC---CTTGCCGGCCACCATCATCAGGTCGGCCATCTCGTCGATGATGACGACGATGTA 310 Query 95346 GGGGAG 95351 ||| || Sbjct 309 GGGCAG 304 >seq81331 Length=977 Score = 91.5 bits (100), Expect = 1e-13 Identities = 132/186 (71%), Gaps = 3/186 (2%) Strand=Plus/Plus Query 95166 CGGCACGTTGGATTTGATAAGGCCTGTGACTACATCCACGGAGGGCCGCTGCGTCGCCAG 95225 ||| | ||| | ||||| ||| |||| || || || ||||| ||||||||||||| Sbjct 23 CGGGAAGTTCGCCTTGATCGTGCCGGTGATGACGTCGACCGAGGGGCGCTGCGTCGCCAT 82 Query 95226 GACGAGATGAATACCGGCTGCGCGCGCCTTCTGGGCGATGCGGACAATGTTGGCCTCGAC 95285 || || || || ||||| ||||||||| ||||||||| ||| | || | |||| Sbjct 83 GATGACGTGGATGCCGGCGGCGCGCGCCATCTGGGCGAGGCGCTGGACCGTGCCTTCGAT 142 Query 95286 TTCTTTCTTGTAGCCGCCCATCATGAGGTCTGCGAGTTCGTCGACCACTACCACGATGTA 95345 || |||| | | ||||||| ||||| || | ||||||| | || |||||||| Sbjct 143 GTC---CTTGCCGGCCACCATCATCAGGTCGGCCATCTCGTCGATGATGACGACGATGTA 199 Query 95346 GGGGAG 95351 ||| || Sbjct 200 GGGCAG 205 >seq61695 Length=1195 Score = 91.5 bits (100), Expect = 1e-13 Identities = 140/200 (70%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 95440 ACCGCCTCGTCGGGCTCGGTGACCACCGGCTGCAAAAGGTGGGGGATACCGTTGTATGGG 95499 ||||||| | ||| |||||||| || || | || || ||||| |||| || Sbjct 1093 ACCGCCTTCTTGGGATCGGTGACGACGGGGGTGAGCAGATGCGGGATGCCGTCATAGACC 1034 Query 95500 GTGAGTTCCACCATCTTCGGGTCGATCATGATGAGCTTGACCCGATCAGGATTGGCTCGG 95559 | || |||| |||||| || |||| |||||| ||| | | | || || || ||| Sbjct 1033 GACAGCTCCAGCATCTTGGGATCGACCATGATCAGCCGGCACTGCTCCGGGGTGAGCCGG 974 Query 95560 TAGAGCATGGAAACCAGCATCGAGTTGATGAAGCTGGACTTGCCCGATCCGGTGGCGCCA 95619 ||||| || || | | ||||| |||||| | ||||||||||| ||||| | ||| Sbjct 973 TAGAGGATCGACAGGATCATCGTGTTGATCGCGACCGACTTGCCCGAGCCGGTCGTGCCC 914 Query 95620 GCCACCAGCAGGTGGGGCAT 95639 || ||||||||||| ||||| Sbjct 913 GCGACCAGCAGGTGCGGCAT 894 >seq23453 Length=293 Score = 84.2 bits (92), Expect = 2e-11 Identities = 100/134 (75%), Gaps = 4/134 (3%) Strand=Plus/Minus Query 98006 TACTTGATCCGCCCGCCGTCCTGGAC--GTGCGCCAGATGGCCCTTCAGGTCGTGTTCCT 98063 ||||||| ||| |||||||| || | |||| || | ||| ||| | |||||| |||| Sbjct 202 TACTTGACCCGGCCGCCGTC--GGTCCTGTGCACCTGGTGGAACTTGACGTCGTGGTCCT 145 Query 98064 CGGTGGCCGCGTACATCTTCACCGGCACATTGACCAACCCAAAGTTGACCGCGCCTGTCC 98123 ||||||||| ||||| |||||||| | ||||| ||| ||| ||||||||| ||| Sbjct 144 CGGTGGCCGAGTACAGCTTCACCGCGATCGAGACCAGCCCGAAGGAGACCGCGCCCTTCC 85 Query 98124 AAACTGCTCGCATG 98137 | | | |||||| Sbjct 84 AGATCGACCGCATG 71 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 345875465321400