Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20arachidis_20[genbank_20GCA_5F001013415.1_202015-05-26] 130,300 sequences; 87,617,276 total letters Query= NC_022096.1 Length=258139 Score E Sequences producing significant alignments: (Bits) Value seq89197 179 6e-40 seq12115 159 6e-34 seq15114 129 1e-24 seq43837 127 3e-24 seq9465 127 3e-24 seq66518 122 1e-22 seq70509 89.7 8e-13 seq43510 89.7 8e-13 seq11212 87.8 3e-12 seq7403 87.8 3e-12 seq42620 84.2 4e-11 seq39598 84.2 4e-11 >seq89197 Length=938 Score = 179 bits (198), Expect = 6e-40 Identities = 215/287 (75%), Gaps = 9/287 (3%) Strand=Plus/Minus Query 35596 CCAGAGTCACATGACCTTCCCACTCAGGTTCCAGCGGCGTCACGTTGACGATGATACCAC 35655 |||| ||||| || ||||||||||| || ||||||||||| |||||||||||||| |||| Sbjct 938 CCAGGGTCACGTG-CCTTCCCACTCCGGCTCCAGCGGCGTGACGTTGACGATGATGCCAC 880 Query 35656 AGCGCGCGTAGGTGCTCTTACCCAAACACACCACGAGGACGTTGCGCGGAATGCGGAAGT 35715 | ||||| ||||||||||| |||| || | || || | |||||||||||||||| Sbjct 879 AACGCGCATAGGTGCTCTTGCCCAGGCAGATGGTCAGCACATCACGCGGAATGCGGAAGT 820 Query 35716 ATTCGACCGTGCGTGCCAGAGCGAAGCTGTTCGGCGGAATCAGGATGC---TGTCAGCCT 35772 ||||||||||||| ||||| |||||| ||| |||||||| ||||| |||| || Sbjct 819 ATTCGACCGTGCGGGCCAGGGCGAAGGAGTTAGGCGGAAT---GATGCAAACGTCACTCT 763 Query 35773 TAACCGGCTGC-AGGCACTTGGGATCGAAGTTCTTCGGATCAACCACTGCGCTGTTGATG 35831 | | | | | | || ||| |||||| |||||||| || || | || || ||| Sbjct 762 TGA-TGTCGACGAAGCTCTTTTCATCGAAATTCTTCGGGTCGACGATGGCCGAGTGGATA 704 Query 35832 TTGGTGAAGACTTCCCACTCATCGGCAGCACGCACGTCATAACCATA 35878 |||||||| || | | |||||||| ||| ||||| || || || Sbjct 703 TTGGTGAACACCTTGAATTCATCGGCGCAACGTACGTCGTAGCCGTA 657 >seq12115 Length=1837 Score = 159 bits (176), Expect = 6e-34 Identities = 150/191 (79%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 35452 GGGTCACACCCGTCTGGCCCTGGTATTTACCGCCGCGATCCTTGTACGAGATTTCGCAGT 35511 ||||||| || |||||||||||| || ||||||||||||||||| || | ||||| Sbjct 1647 GGGTCACGCCGCGCTGGCCCTGGTACTTGCCGCCGCGATCCTTGTAGGACACCTCGCAAG 1706 Query 35512 CCTCGTCACTCTCGAAAAACAGCATCTGCGCCACACCTTCGTTCGCGTACACACGCGCCG 35571 ||||||| | | ||||||||||| ||||| || ||||| ||||| | |||| Sbjct 1707 CCTCGTCGGATTGCAGGAACAGCATCTGGGCCACGCCCTCGTTGGCGTAGATCTTGGCCG 1766 Query 35572 GCAGGTTGGTAGTGTTGCTGAACTCCAGAGTCACATGACCTTCCCACTCAGGTTCCAGCG 35631 ||||| |||| |||||| ||||||||| ||||| || ||||||||||| || ||||||| Sbjct 1767 GCAGGGTGGTGGTGTTGGAGAACTCCAGGGTCACGTGCCCTTCCCACTCGGGCTCCAGCG 1826 Query 35632 GCGTCACGTTG 35642 | || |||||| Sbjct 1827 GGGTGACGTTG 1837 >seq15114 Length=3758 Score = 129 bits (142), Expect = 1e-24 Identities = 79/84 (94%), Gaps = 0/84 (0%) Strand=Plus/Minus Query 120226 TTGCCGGTATAGCTCAGCTGGTAGAGCAACTGACTTGTAATCAGTAGGTCTCGGGTTCGA 120285 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 3600 TTGCCGGTATAGCTCAGCTGGTAGAGCAACTGACTTGTAATCAGTAGGTCCCGGGTTCGA 3541 Query 120286 TCCCTGATGCCGGCACCATATTCT 120309 |||| |||||||||||| |||| Sbjct 3540 CTCCTGGTGCCGGCACCATCTTCT 3517 >seq43837 Length=359 Score = 127 bits (140), Expect = 3e-24 Identities = 179/245 (73%), Gaps = 10/245 (4%) Strand=Plus/Minus Query 35639 GTTGACGATGATACCACAGCGCGCGTAGGTGCTCTTACCCAAACACACCACGAGGACGTT 35698 |||||||||||| || |||||||||||||||||||| |||| ||| | || |||| Sbjct 359 GTTGACGATGATGCCGCAGCGCGCGTAGGTGCTCTTGCCCAGACAGATGGTCAGCACGTC 300 Query 35699 GCGCGGAATGCGGAAGTATTCGACCGTGCGTGCCAGAGCGAAGCTGTTCGGCGGAATCAG 35758 |||||||| |||||||| ||||||||||| ||||| || ||| ||||| ||||| Sbjct 299 ACGCGGAATACGGAAGTACTCGACCGTGCGGGCCAGGGCAAAGGAATTCGGTGGAAT--- 243 Query 35759 GATGC---TGTCAGCCTTAACCGGCTGC-AGGCACTTGGGATCGAAGTTCTTCGGATCAA 35814 ||||| ||| ||| | | | | | || ||| ||||| |||||||| || | Sbjct 242 GATGCAAACGTCGCTCTTGA-TGTCAACGAAGCTCTTCTCGTCGAAATTCTTCGGGTCCA 184 Query 35815 CCACTGCGCTGTTGATGTTGGTGAAGACTTCCCACTCATCGGCAGCA-CGCACGTCATAA 35873 |||| || || |||||||||||| || | | || ||||| ||| ||||| || || Sbjct 183 CCACGGCAGAGTGGATGTTGGTGAACACCTTGAATTCGTCGGC-GCAGCGCACATCGTAG 125 Query 35874 CCATA 35878 || || Sbjct 124 CCGTA 120 >seq9465 Length=5460 Score = 127 bits (140), Expect = 3e-24 Identities = 96/113 (85%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 247008 AGACGTGCGATGATTTCGGAGTTCATGCTGCGATGGTGCGTACGGGCAACGTCCGCGATG 247067 ||||| ||||||||||||||||||||||||||||| || | ||||| || ||||||||| Sbjct 3944 AGACGCGCGATGATTTCGGAGTTCATGCTGCGATGATGGTTGCGGGCCACATCCGCGATG 3885 Query 247068 CGTTCGCGCATGCCATCCGGCAAACGCACGACAAACTTGTCGGCGCTGCGGCT 247120 || || |||||||| || |||| ||||||||| || ||||| ||| | ||||| Sbjct 3884 CGCTCTCGCATGCCCTCGGGCAGACGCACGACGAATTTGTCAGCGGTACGGCT 3832 >seq66518 Length=204 Score = 122 bits (134), Expect = 1e-22 Identities = 150/201 (75%), Gaps = 3/201 (1%) Strand=Plus/Plus Query 35644 CGATGATACCACAGCGCGCGTAGGTGCTCTTACCCAAACACACC-ACGAGGACGTTGCGC 35702 ||||||| || ||||||||||| |||||||| |||| |||||| || || || |||| Sbjct 1 CGATGATGCCGCAGCGCGCGTAAGTGCTCTTGCCCAGGCACACCCACCAGCGTGTCGCGC 60 Query 35703 GGAATGCGGAAGTATTCGACCGTGCGTGCCAGAGCGAAGCTGTTCGGCGGAATCA-GGAT 35761 || || |||||| |||| || ||||| ||||| ||||||||||| ||||| || | | || Sbjct 61 GGGATACGGAAGAATTCCACGGTGCGCGCCAGGGCGAAGCTGTTGGGCGGGATGATGCAT 120 Query 35762 GCTGTCAGCCTTAACCGGCTGCAGGCACTTGGGATCGAAGTTCTTCGGATCAACCACTGC 35821 | ||| |||| | | | || ||| ||||||||| ||| ||||| || | | Sbjct 121 TC-GTCGGCCTCGATGTCCACGAAGCTCTTCGGATCGAAGCGCTTGGGATCGACGATGGT 179 Query 35822 GCTGTTGATGTTGGTGAAGAC 35842 ||||||||||||||| || Sbjct 180 CGAGTTGATGTTGGTGAACAC 200 >seq70509 Length=725 Score = 89.7 bits (98), Expect = 8e-13 Identities = 66/77 (86%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 120228 GCCGGTATAGCTCAGCTGGTAGAGCAACTGACTTGTAATCAGTAGGTCTCGGGTTCGATC 120287 ||||||||||||||| |||||||| |||| ||||||||||| |||| ||||||||| Sbjct 58 GCCGGTATAGCTCAGAAGGTAGAGCTACTGTTTTGTAATCAGTGGGTCGTGGGTTCGATT 117 Query 120288 CCTGATGCCGGCACCAT 120304 ||| |||||||||||| Sbjct 118 CCTACTGCCGGCACCAT 134 >seq43510 Length=3912 Score = 89.7 bits (98), Expect = 8e-13 Identities = 129/181 (71%), Gaps = 1/181 (1%) Strand=Plus/Plus Query 186128 AGTTGCTGACGCACTTGGTTGACGTGGTTGGAG-TAGATATGCGCGTCGCCGAACGTGTG 186186 ||||| | ||| | || | || |||||||||| || | ||||| ||||| | |||||| Sbjct 558 AGTTGTTCGCGCGCCTGTTCGAAGTGGTTGGAGTTACAGGTGCGCATCGCCCAGCGTGTG 617 Query 186187 GAACAGCTTGCCTGATGCCAGGCCGAATGCCTGTGCCAGCATGTGCGTCATGATAGAGTA 186246 | | | ||| |||||||| ||||| |||| |||||| |||| | | ||| Sbjct 618 CACGAAATCGCCCACGCCCAGGCCGGTGGCCTGCGCCACCATGTGGGTCAGCAGCGCGTA 677 Query 186247 GAAGCCGAAGTTAAAAGGCACGCCGAGGAAGAAATCCCCGCTACGCTGATAGAGCTTGCA 186306 | | ||| ||| || |||||||| ||||| | || ||||| ||||| || |||| ||| Sbjct 678 GCTGGCGATGTTGAACGGCACGCCCAGGAAAATGTCGCCGCTGCGCTGGTACAGCTGGCA 737 Query 186307 G 186307 | Sbjct 738 G 738 >seq11212 Length=2167 Score = 87.8 bits (96), Expect = 3e-12 Identities = 69/83 (83%), Gaps = 0/83 (0%) Strand=Plus/Plus Query 122605 CGGGTCGTTAGCTCAGTTGGTAGAGCATGGCGCTTTTAACGCCGTGGTCGTTGGTTCGAG 122664 ||||||||||||||||| ||||||||| ||||||||| ||||||| ||||||| Sbjct 332 CGGGTCGTTAGCTCAGTCGGTAGAGCAGTTGGCTTTTAACCAATTGGTCGTAGGTTCGAA 391 Query 122665 TCCAACACGACCCACCAGTTTCA 122687 ||| ||||||||||||| |||| Sbjct 392 TCCCACACGACCCACCATCTTCA 414 >seq7403 Length=2901 Score = 87.8 bits (96), Expect = 3e-12 Identities = 69/83 (83%), Gaps = 0/83 (0%) Strand=Plus/Plus Query 122603 TTCGGGTCGTTAGCTCAGTTGGTAGAGCATGGCGCTTTTAACGCCGTGGTCGTTGGTTCG 122662 || |||||||||||||||| ||||||||| ||||||||| ||||||| |||||| Sbjct 1091 TTTGGGTCGTTAGCTCAGTCGGTAGAGCAGTTGGCTTTTAACCAATTGGTCGTAGGTTCG 1150 Query 122663 AGTCCAACACGACCCACCAGTTT 122685 | ||| ||||||||||||| ||| Sbjct 1151 AATCCTACACGACCCACCATTTT 1173 >seq42620 Length=558 Score = 84.2 bits (92), Expect = 4e-11 Identities = 68/81 (84%), Gaps = 1/81 (1%) Strand=Plus/Plus Query 122601 CGTTCGGGTCGTTAGCTCAGTTGGTAGAGCATGGCGCTTTTAACGCCGTGGTCGTTGGTT 122660 |||| |||||||||||||||| ||||||||| ||||||||| ||||||| |||| Sbjct 437 CGTT-GGGTCGTTAGCTCAGTCGGTAGAGCAGTTGGCTTTTAACCAATTGGTCGTAGGTT 495 Query 122661 CGAGTCCAACACGACCCACCA 122681 ||| ||| ||||||||||||| Sbjct 496 CGAATCCTACACGACCCACCA 516 >seq39598 Length=301 Score = 84.2 bits (92), Expect = 4e-11 Identities = 61/71 (86%), Gaps = 0/71 (0%) Strand=Plus/Plus Query 120237 GCTCAGCTGGTAGAGCAACTGACTTGTAATCAGTAGGTCTCGGGTTCGATCCCTGATGCC 120296 |||||| |||||||||||||||||||||||||||||||| |||||| | ||| ||| Sbjct 1 GCTCAGTTGGTAGAGCAACTGACTTGTAATCAGTAGGTCGGGGGTTCAAATCCTCTCGCC 60 Query 120297 GGCACCATATT 120307 |||||||| || Sbjct 61 GGCACCATTTT 71 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 824571588012000