Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20arachidis_20[genbank_20GCA_5F001013415.1_202015-05-26] 130,300 sequences; 87,617,276 total letters Query= NC_022987.1 Length=43940 Score E Sequences producing significant alignments: (Bits) Value seq107083 230 7e-56 seq80150 181 3e-41 seq49650 168 2e-37 >seq107083 Length=466 Score = 230 bits (254), Expect = 7e-56 Identities = 326/458 (71%), Gaps = 3/458 (1%) Strand=Plus/Plus Query 23024 CGCTGCCGGTGACGAGAACGATCCGGCCAAGCTGTACGCTGCCATTGGCAAGCTGTTCTC 23083 |||| |||| ||||| |||||||||||||||||| || | || || || | Sbjct 3 CGCTTCCGGCGACGAACTGGATCCGGCCAAGCTGTACCACGCGCTGGGTCAGTTGCTGAT 62 Query 23084 CGAAATGGAGGAGACCAAGAAGGTCAAGCCGCAGCGCGATGGCATCGTCCTGATCGTCCG 23143 | ||||| |||| |||| ||| | |||| ||||| | | || |||||| Sbjct 63 GCAGATGGAAGAGA---AGAACGTCGATCCGCGCCGCGAGAAGCTGTTGCTCGCCGTCCG 119 Query 23144 CCCGACCGTGTTCTACACCCTCCAGCAGGCCGAGCAGATCGTCAACGGCGAGTACCTGAC 23203 |||| | || ||| || | | || ||||||||||||||||| |||||| | || Sbjct 120 CCCGGCACAGTATTACGTGCTGATGGACGCGGAGCAGATCGTCAACGGTGAGTACATCAC 179 Query 23204 CAGCGACGGCAACCGGCTGACCGGCATCCCGGTCTTCAAGGCGTGGGGCGTCCCGGTCCT 23263 | |||||||| |||| | ||||||| | ||||||||||||||| | ||| || | Sbjct 180 CTCGAACGGCAACAAGCTGGACAACATCCCGATGTTCAAGGCGTGGGGCATTCCGATCAT 239 Query 23264 GTCGAGCGAGAACCTGCCGAACGGCGTGGTCGAAGGCCACCTGCTGTCGAACGAGGACAA 23323 |||| | | ||||||||||| ||||||||| || ||||||||||| ||||||||||| Sbjct 240 CTCGACCAACAACCTGCCGAAGGGCGTGGTCACCGGTCACCTGCTGTCCAACGAGGACAA 299 Query 23324 CGACAACTTCTACGACGGCGACTTCACCGGCCTCGTGGCCGTGGCGGTCTCGCCGCGTGC 23383 || ||||||||||||||||||||||||| | || | ||| |||| || ||| || Sbjct 300 CGGCAACTTCTACGACGGCGACTTCACCAACGTCATCGCCCTGGCCATCGGCCCGAAGGC 359 Query 23384 GCTGCTGATCGCCGAAGCGCTGCCGCTCCAGTCGAGCGTGTGGTGGTCCGACGCCTCGAA 23443 |||| |||||| ||| | |||||||||| | | | |||| || |||| ||||| Sbjct 360 GCTGATGATCGGCGAGTCCAAGCCGCTCCAGACCAAGATCTGGTACTCGGACGAGTCGAA 419 Query 23444 GTGCTTCTTCGTGGACAGCTGGATGTCGTTCGCCGTCG 23481 | || ||||||| ||| | ||||||| | ||| Sbjct 420 GGTCTGGACCGTGGACGCGTGGTTCTCGTTCGGCATCG 457 >seq80150 Length=463 Score = 181 bits (200), Expect = 3e-41 Identities = 153/187 (82%), Gaps = 1/187 (1%) Strand=Plus/Minus Query 14766 AAGGAGGCGTGGGTCAACATCGCCATCGGGTACAGCATCAACTACTGCGCGAACATCGCG 14825 |||||||| | ||||||||| |||||| |||| ||||||||||| ||||||| | || Sbjct 334 AAGGAGGCCGGTGTCAACATCCTCATCGGCTACACCATCAACTACTCCGCGAACGTTGCA 275 Query 14826 TTGCTGCCGCTGCTGTGGCATCCCGAGCACCCGCTGCTGTCGGCGCACGCCATCGGCGTT 14885 |||| ||| | |||||| | || |||||| | || ||||||||||||||||| Sbjct 274 CTGCTCCCGATCCTGTGG-ACAAGGATCACCCGTTCCTAAGCGCGCACGCCATCGGCGTC 216 Query 14886 GCGTTCACGCTCATCAGCTTCGTGCGCCAGTACATCATCCGCCGCTGGTTCAGCAAGGGT 14945 ||||| || || |||||||||||||| ||||||||||||||||||||||||| |||||| Sbjct 215 GCGTTTACACTGATCAGCTTCGTGCGTCAGTACATCATCCGCCGCTGGTTCAACAAGGGA 156 Query 14946 GACTGAT 14952 ||||||| Sbjct 155 GACTGAT 149 >seq49650 Length=567 Score = 168 bits (186), Expect = 2e-37 Identities = 294/421 (70%), Gaps = 14/421 (3%) Strand=Plus/Plus Query 12992 GCAGCAGAACAGGGCAACCGCTGCGCACTGTGCGGCGGTCAGCTCGGACTGAAGGCACCG 13051 || || || |||||| |||||| ||||| || ||||||| ||||| || || Sbjct 152 GCCGCTGAGCAGGGCGGGCGCTGCAAGTTGTGCCAAGGGAAGCTCGGGCTGAAAGCCCCA 211 Query 13052 CTCGACCCGGTGCTGGATCACGATCATCGTACTGGCGCAGTGCGAGGCGTACTCCATCGT 13111 || || || ||||| || ||||| || ||||| ||||| || ||||| ||||| ||| Sbjct 212 CTTGATCCCGTGCTCGACCACGACCACGCGACTGGTGCAGTACGTGGCGTTCTCCACCGT 271 Query 13112 GGGTGCAACTCGCTGCTGGGCAAGGTCGAGAACAATGGCCCACGTTATGGAGTGCGGGAC 13171 ||||||||||| ||||| || ||||| |||||||| | || || || |||| | Sbjct 272 GGGTGCAACTCTCTGCTCGGTAAGGTAGAGAACAACGCAGGGCGGTACGGTGTGCATGCA 331 Query 13172 ATCCTCGCCTTCTGCGGAGGGCTTGCGAACTACCTGCGAAAGCACATGACCAACATCA-C 13230 | || |||||| || || || ||||| | || |||| |||||| ||| | Sbjct 332 CTGTATGCGTTCTGCCACGGCCTCGCTCCATACCTACAAACCCACACAACCAACGTCACC 391 Query 13231 GGGCTATCTGCATCCCACCCACAAGACCGAGGACGAGAAGCGTATCGCTCGCAATGCGAA 13290 |||| ||||| |||| || |||||| | |||||||||| | |||| || |||||||| Sbjct 392 ATGCTA-CTGCA-CCCAACCTCAAGACTGCGGACGAGAAGAGACTCGCACGTAATGCGAA 449 Query 13291 AGCGCGTAAGGCCCGAGCAATGAAGAAGGAGAACCCGTGAACCTCAC-------CACATT 13343 ||||| ||||| || | |||||||| | | | |||| |||| || | Sbjct 450 GGCGCGCAAGGCACGGGGCCACAAGAAGGACACCGCATGAATGTCACGCTGAAACAACTG 509 Query 13344 C-CTGAAGCACGCCCCGAAGCAGGGGCCGAAGATTCTGTGCCTCGACATCGAGACCTTCC 13402 | | || | ||||| ||||| || || ||||| | |||||||||||||| || |||| Sbjct 510 CTCCGACGTGCGCCC--AAGCACGGACC-AAGATCATCTGCCTCGACATCGAAACATTCC 566 Query 13403 C 13403 | Sbjct 567 C 567 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 140269023637200