Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20arachidis_20[genbank_20GCA_5F001013415.1_202015-05-26] 130,300 sequences; 87,617,276 total letters Query= NC_023006.1 Length=43564 Score E Sequences producing significant alignments: (Bits) Value seq55576 172 2e-38 seq69190 147 6e-31 seq105218 134 4e-27 seq70475 127 6e-25 seq16638 105 2e-18 seq29027 104 6e-18 seq10342 100 8e-17 seq68955 93.3 1e-14 seq40890 89.7 1e-13 seq33148 89.7 1e-13 seq69341 86.0 2e-12 seq31229 86.0 2e-12 seq45636 84.2 6e-12 seq34483 84.2 6e-12 >seq55576 Length=704 Score = 172 bits (190), Expect = 2e-38 Identities = 265/365 (73%), Gaps = 21/365 (6%) Strand=Plus/Plus Query 37141 AAAGAAAATCACTTCGGCGCAAACGTGCTGGTTACCCGCAAAGGTGCTGTTCGGGCCCGC 37200 || ||| ||||||||| | | | |||||||| ||||| ||||| || || | | || Sbjct 349 AAGGAACGTCACTTCGGTGAAGAGGTGCTGGTAACCCGTAAAGGCGCGGT----GTCAGC 404 Query 37201 GA----GGGCGACCTGGGCATCATCCCTGGCTCGATGGGTGCGAAGTCATTCATCGTTCG 37256 || |||||| |||||||||||||| ||||| ||||| || ||| | |||||| || Sbjct 405 GAAGAAGGGCGAACTGGGCATCATCCCCGGCTCCATGGGCGCCAAGAGCTACATCGTGCG 464 Query 37257 CGGCAAGGGAAATTCCGAATCGTTCTGCTCTTGCAGCCACGGTGCCGGTCGAATGATGAG 37316 |||| ||| || || |||||||||| ||||||||||| ||||| || | ||||| Sbjct 465 CGGCCTGGGTAACGAGGAGGCGTTCTGCTCCTGCAGCCACGGCGCCGGGCGCACCATGAG 524 Query 37317 CCGGGCCGAAGC--AAAACGCCGGTTCACAGTCG-AGGATCATGAGGCG-GCCAC--CAA 37370 ||| || | || | || | | ||||| ||| ||||||| || || ||||| | Sbjct 525 CCGAACCAAGGCGAAGAAGGTC--TTCACCATCGAAGGATCA-GATCCGCGCCACGGCTC 581 Query 37371 AGGTATCGAGTGCCGCAAAGATGCCGAAGTGATCGACGAGA-CGCCAGCGGCTTACAAGG 37429 | || | || |||||||| || ||||| ||||||||||| | || ||| ||||||| Sbjct 582 A-GTGTGGAATGCCGCAAGGACGCCGACGTGATCGACGAAATAACCGATGGCCTACAAGG 640 Query 37430 ACATCGATGCGGTCATGGCCGCGCAATC-CGCCCTGGTGGACATCGTGCACACGCTGCGC 37488 |||||||| ||| |||| ||| || | || ||||||| | |||||||| ||||| Sbjct 641 ACATCGATCAGGTAATGGACGCCCAGCCGCGAGTTGGTGGAAGTGGTGCACAC-CTGCGT 699 Query 37489 CAAGT 37493 || || Sbjct 700 CAGGT 704 >seq69190 Length=479 Score = 147 bits (162), Expect = 6e-31 Identities = 328/481 (68%), Gaps = 21/481 (4%) Strand=Plus/Plus Query 5103 GACCAGGTAGGCGTCGTTCTGAGCGCGAGCATTGACGCCGACCGACGCGGCCGTGCGGTG 5162 |||||||| |||||| || || || ||| ||||| || || || ||| | | ||| Sbjct 6 GACCAGGTTGGCGTCATTGAATCCGTGACCATCGACGCAGATCGCCGGGGCGG--CTGTG 63 Query 5163 GTGAAGTTCAGCCAGTCG-GCGCGCGCCCAGGAAATCTTCCAGGACATTATCGACGGCAT 5221 ||| || | || | ||||| ||| | || || ||| | ||||| | ||||| || Sbjct 64 GTGCGCTTTGGA-AGAAGCGCGCGTGCCGATGAGATTTTCAACGACATCGTTGACGGAAT 122 Query 5222 CCGCAAACACATTTCGGTCGGCTACCGCGTTCACGGCGCCAAGCTGGTGGAAACCCGCGA 5281 || || ||| |||| || || |||||||| | ||||| ||| ||||| ||||| Sbjct 123 TCGGAAGCACGTTTCTGTTGGTTACCGCGTGTTAGCGGCCAAACTGACTGAAACGCGCGA 182 Query 5282 CGACGTG---GACGTGTACCGAATCACCGACTGGGAGCCGCTGGAAATTTCCATTGTCAG 5338 ||| | ||||| ||||| || || || ||||| || ||||||||||| || || Sbjct 183 CGAATGGCAGGACGTTTACCGGATTACTGATTGGGAACCTTACGAAATTTCCATCGTGAG 242 Query 5339 CGTGCCGTTCGACCACACCGTGGGGTTCGGCCG-CAGCGCGGCAAACCCACAAGAGGAAC 5397 ||| ||| ||| || ||| || | || || || | | ||| ||| ||||| |||| Sbjct 243 CGTTCCGGCTGACAGCAGCGTTGGCATTGGGCGTCATCTTGACAACCCC-CAAGAAGAAC 301 Query 5398 CA---GCAGCGGCACCCGGCCAAACTGCGACCATCCAAAGTGGCGCGGCCACTGGACAAA 5454 | | ||| ||||| | ||||| || | || | | | ||| | ||| Sbjct 302 AACGCGGAGCTAAACCCG---ATACTGCTGGCA-CATTAGACGTTCCGGCACC--AAAAA 355 Query 5455 CTAACC---CTGAGGGTATCAGAAACATGAATATCAAGGTTCTGCGGGATGCCTCTGGCA 5511 || |||||| || |||| |||||||| |||||| |||| ||||| || || | Sbjct 356 TTATTGTTTCTGAGGATAATCGAAATATGAATATTAAGGTTTTGCGTGATGCATCAGGTA 415 Query 5512 ACCTGGTCCGCGCCGAAGTGGACGAAAACGACAACATCGTGAAGGTGCTGGAAGTCCTGG 5571 ||||||| ||||||||||| ||||||| || |||||| || || |||||||| |||| Sbjct 416 ACCTGGTGCGCGCCGAAGTTGACGAAAGCGGTAACATCACCAAAGTTCTGGAAGTGCTGG 475 Query 5572 A 5572 | Sbjct 476 A 476 >seq105218 Length=700 Score = 134 bits (148), Expect = 4e-27 Identities = 244/352 (69%), Gaps = 9/352 (3%) Strand=Plus/Minus Query 9612 AGCCTAACCCACGCCGGCAAGAACGTTGGCAGCACGCACCGCCACACTGGCGTCACCACC 9671 ||||| || ||| |||||| ||| ||||||||||||||| |||| || || | Sbjct 356 AGCCTGACGCACAACGGCAAAAACATTGGCAGCACGCACCTGCACAGCGGTGTTCAGTCT 297 Query 9672 GGCAGCGGCACCAGCGGAG-CGCCGAGCTGA-CGGCAAACCCACAAG--AGGAA----CC 9723 ||| | | || | || || | || || | | | ||||| |||| |||| || Sbjct 296 GGCGGAGCAACGA-CGCAGGCACCTGTCTAATCTGACAACCCCCAAGCAAGGATAAGCCC 238 Query 9724 GCCCATGCGGGCCACGCAGAATGGCCCGCATGGACGGAATCAACGCAACAACCGGCAAGC 9783 | ||| || | ||| || ||||||||| | || | || || |||| ||| || Sbjct 237 GACCACCCGATGCGGGCATCATTGCCCGCATGAAAGGTACGAATGCGGCAACAGGCGCGC 178 Query 9784 GCCTGGGTGGCCTGCAGCATCTGCGGCAATCCATCAGCGACATTCTACGGACGCCAATTG 9843 |||| |||| | | |||||||| || || || ||||||| || ||||||| | Sbjct 177 CGCTGGATGGCATCGACCATCTGCGCCAGTCAATACGCGACATACTCACTACGCCAACCG 118 Query 9844 GCAGCCGCGTGATGCGCCGCGAGTACGGCAGCCGGCTGTTCAGCCTGATTGACGCCCCAA 9903 ||| || |||||||||||||| || |||||||| ||| | |||| | ||||| |||| Sbjct 117 GCACGCGAGTGATGCGCCGCGACTATGGCAGCCGACTGCCCTCCCTGGTGGACGCGCCAA 58 Query 9904 TGAACCGCACCACGCTGCTGAACCTGTACGCGGCCACCGCCGACGCACTGGA 9955 |||||||| ||||||||| | | ||||| ||||||| || || ||||| Sbjct 57 TGAACCGCGAAACGCTGCTGGATATTTACGCTGCCACCGTTGAAGCGCTGGA 6 >seq70475 Length=794 Score = 127 bits (140), Expect = 6e-25 Identities = 255/372 (69%), Gaps = 6/372 (2%) Strand=Plus/Minus Query 13426 CAATGTATGAGC-AGAGTTCTAGACCTGTGGAAAGGATTGACCGGGGCTGTTCTTCCATT 13484 |||||||||||| ||| |||| ||| | |||||||| ||| | || || ||||||||||| Sbjct 416 CAATGTATGAGCCAGA-TTCTGGACTTTTGGAAAGGGTTGTCAGGTGCAGTTCTTCCATT 358 Query 13485 CGCTGGGAGCGCAGCGCCTACTGACTGGTTGCTGTGCTACGGCCAGGCCGTCAGCCGAAC 13544 ||||| || ||||| | | ||| | ||||| || ||| || | || | Sbjct 357 TGCTGGCGCTGCTGCGCCATCAGGGTGGCTACTGTGTGCGGGGCAGATTGTTAAGCGGGC 298 Query 13545 CACCTATGCCGGCCTTTTTGCCGTTATTGGTATCACCTACGGCGCAGGCGACGG--CAGC 13602 ||||| | | || |||| || || |||| | ||||| || || || || | Sbjct 297 TGATTATGCGGAGTTGTTCGCCGCGATAGGCGTCACGTTTGGCGCTGGTGATGGTTCAAC 238 Query 13603 ACCACTTTCAACCTTCCAGACCTGCGTGGCCGCGTTCCGGCTGGTGTGGACAACATGGGC 13662 | || ||| ||||||| | || || |||||| ||||||| || || || |||||| Sbjct 237 AACA-TTTGGCTATTCCAGATTTACGCGGGCGCGTTGCGGCTGGCGTTGATAATATGGGC 179 Query 13663 GGCACCGCAGCTGGGCGCCTGACCACTGCTGCTGGTGGAGTCAACGCAGCCGTCCTGGGC 13722 ||||| || || ||| | || | |||| || ||| | |||| || | ||||| Sbjct 178 GGCACGGCTGCCAACCGCGTCACAGCGGCTGGTGCCGGATTTAACGGTGCAGCATTGGGC 119 Query 13723 GCGGTTGGTGGCGCATCCACCCACACCCTGACCGCTGCGCAGATGCCTGGCCACACCCAC 13782 |||| ||| || | || |||||||||||| | ||||||||||| | ||| | |||| Sbjct 118 GCGGCTGGCGGTACTCAGACGCACACCCTGACCACCGCGCAGATGCCCGCCCATAACCAC 59 Query 13783 GCCGGC-ACGAC 13793 | || | ||||| Sbjct 58 GGCGTCAACGAC 47 >seq16638 Length=4153 Score = 105 bits (116), Expect = 2e-18 Identities = 168/237 (71%), Gaps = 18/237 (8%) Strand=Plus/Plus Query 23416 CGACCACCAAGCAGCAGAAGTTCGCCTCTGAAGCTGTCCACCACAATTTCGGTGGTGTAG 23475 || ||||| |||| | | | | ||| ||| |||| ||||| ||||||||||||||| Sbjct 3926 CGGCCACCCAGCAACTGCATGTTGCCGTTGA---TGTCGACCACGATTTCGGTGGTGTAG 3982 Query 23476 TTGGTCGCG-CCGTCTTTTTCC---CACTTGCGTGTCTGCAGCTTGCCGATGATCGCGCA 23531 | || | ||||| | || || ||||| || |||| |||| || || Sbjct 3983 C-GATCCTGACCGTCCTGGCCCTGCCATTTGCGGGTACGCAGAGTGCCCTCGA-----CA 4036 Query 23532 TTCACTT-----CCCTTGCGCAGATACTCGCCGGCAATCTCGGCGACCTTGCCGAAGAAC 23586 | || | |||||||| | ||||||||||| |||||||||| ||||||||| Sbjct 4037 TAGACCTGGGAGCCCTTGCGGATGTACTCGCCGGCGATCTCGGCGAGACGACCGAAGAAC 4096 Query 23587 ACGACGCGGTGCCATTCGGTCTTTTCCTTGCGCTCGCCGGTCTGCTTGTCCTTCCAG 23643 || ||||||||||||||||| |||| ||| ||||||||||||||||||||| Sbjct 4097 ACCACGCGGTGCCATTCGGTGCGGTCCTGCTGCTGACCGGTCTGCTTGTCCTTCCAG 4153 >seq29027 Length=2418 Score = 104 bits (114), Expect = 6e-18 Identities = 132/182 (73%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 23539 CCCTTGCGCAGATACTCGCCGGCAATCTCGGCGACCTTGCCGAAGAACACGACGCGGTGC 23598 || || ||||| || || || || | || || | ||||| || | |||||| |||||| Sbjct 948 CCTTTACGCAGGTATTCCCCCGCCACTTCCGCCAGTTTGCCAAACAGCACGACACGGTGC 1007 Query 23599 CATTCGGTCTTTTCCTTGCGCTCGCCGGTCTGCTTGTCCTTCCAGGTTTCCGACGTGGCC 23658 |||||||| | || ||| || |||||||||||||| |||| | || || || ||| Sbjct 1008 CATTCGGTGATCTCTTTGTTTTCACCGGTCTGCTTGTCGCGCCAGCTCTCAGAGGTAGCC 1067 Query 23659 AGGCTGATGTTGCAGACGGCATCGCCGTTTTGCAGGTAGCGCACTTCCGGGTCATTACCC 23718 || | |||||| ||| || | || ||| ||| ||| || |||||||| || | |||| Sbjct 1068 AGCGTAATGTTGGCGACAGCGCCACCATTTGGCATGTAACGTACTTCCGGATCCTGACCC 1127 Query 23719 AG 23720 || Sbjct 1128 AG 1129 >seq10342 Length=7320 Score = 100 bits (110), Expect = 8e-17 Identities = 67/75 (89%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 21062 ATGGCGACCCCGACAGGATTCGAACCTGTGACCGTTCGCTTAGAAGGCGAATGCTCTATC 21121 |||||| |||| ||||| ||||||||| |||| | ||||||||||||| |||||||||| Sbjct 1517 ATGGCGCGCCCGGCAGGACTCGAACCTGCGACCATCCGCTTAGAAGGCGGATGCTCTATC 1576 Query 21122 CAGCTGAGCTACGGG 21136 ||||||||||||||| Sbjct 1577 CAGCTGAGCTACGGG 1591 >seq68955 Length=479 Score = 93.3 bits (102), Expect = 1e-14 Identities = 111/151 (74%), Gaps = 0/151 (0%) Strand=Plus/Minus Query 24217 GGCAGTCGCTCTTCAACCAGGCGTGCATAACCCTGGATATCGTGCCAGTTGTCGGCATAG 24276 |||| || || || ||||| |||||| |||||||| ||||||||||||||||||||| Sbjct 170 GGCAACCGGTCCTCGACCAGCTTTGCATAGCCCTGGATGTCGTGCCAGTTGTCGGCATAG 111 Query 24277 TCTGGATCGCCGGAAAGGATTCGGGCCTGCTTGTCAGCGATGACGGAAAGGGCCTGCTTT 24336 | |||||||| || ||||| || || |||||| ||| || | || || || Sbjct 110 TTGGGATCGCCAGACAGGATGCGCGCGATCTTGTCGCAGATCACCGTGAGCGCTTGACGC 51 Query 24337 TGTGCTGGGTTCAACCGCGCCCAGCCTGGAG 24367 || || | | || ||| |||||||||| || Sbjct 50 TGGGCGGCATCCAGCCGTGCCCAGCCTGCAG 20 >seq40890 Length=365 Score = 89.7 bits (98), Expect = 1e-13 Identities = 67/79 (85%), Gaps = 0/79 (0%) Strand=Plus/Plus Query 23536 CTTCCCTTGCGCAGATACTCGCCGGCAATCTCGGCGACCTTGCCGAAGAACACGACGCGG 23595 || || |||||||| ||||||||||| |||||| | | ||| |||||||||||||||||| Sbjct 31 CTGCCTTTGCGCAGGTACTCGCCGGCGATCTCGCCAAGCTTTCCGAAGAACACGACGCGG 90 Query 23596 TGCCATTCGGTCTTTTCCT 23614 ||||| ||||| ||||| Sbjct 91 TGCCACTCGGTGCGTTCCT 109 >seq33148 Length=515 Score = 89.7 bits (98), Expect = 1e-13 Identities = 66/77 (86%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 21063 TGGCGACCCCGACAGGATTCGAACCTGTGACCGTTCGCTTAGAAGGCGAATGCTCTATCC 21122 ||||||||||| ||| |||||||| |||| ||||||||||||| |||||||||| Sbjct 285 TGGCGACCCCGGTAGGGCTCGAACCTACGACCTGCCGCTTAGAAGGCGGCTGCTCTATCC 226 Query 21123 AGCTGAGCTACGGGGCC 21139 ||||||||||||||||| Sbjct 225 AGCTGAGCTACGGGGCC 209 >seq69341 Length=1420 Score = 86.0 bits (94), Expect = 2e-12 Identities = 94/123 (76%), Gaps = 4/123 (3%) Strand=Plus/Minus Query 23539 CCCTTGCGCAGATACT-CGCCGGCAATCTCGGCGACCTTGCCGA---AGAACACGACGCG 23594 ||||||||||| |||| || |||| | | ||||| || || ||| |||||| Sbjct 1317 CCCTTGCGCAGGTACTGCGTCGGCCACCCGGGCGAGGTTCTCGTTGTAGATCACGACCGA 1258 Query 23595 GTGCCATTCGGTCTTTTCCTTGCGCTCGCCGGTCTGCTTGTCCTTCCAGGTTTCCGACGT 23654 |||||| |||||||| ||||||||||||||||| | ||||||||| | ||||||||| Sbjct 1257 GTGCCACTCGGTCTTCTCCTTGCGCTCGCCGGTGTTGCGGTCCTTCCACGATTCCGACGT 1198 Query 23655 GGC 23657 || Sbjct 1197 CGC 1195 >seq31229 Length=3871 Score = 86.0 bits (94), Expect = 2e-12 Identities = 72/88 (82%), Gaps = 3/88 (3%) Strand=Plus/Plus Query 21052 AATCGAAGTGA---TGGCGACCCCGACAGGATTCGAACCTGTGACCGTTCGCTTAGAAGG 21108 ||| |||| || ||||| ||| ||||||||||||||||||||| |||||||||| Sbjct 38 AATAGAAGAGAAAGTGGCGCGCCCTACAGGATTCGAACCTGTGACCTACGGCTTAGAAGG 97 Query 21109 CGAATGCTCTATCCAGCTGAGCTACGGG 21136 | |||||||||||||||||||| ||| Sbjct 98 CCGGTGCTCTATCCAGCTGAGCTAAGGG 125 >seq45636 Length=1761 Score = 84.2 bits (92), Expect = 6e-12 Identities = 67/81 (83%), Gaps = 0/81 (0%) Strand=Plus/Plus Query 21063 TGGCGACCCCGACAGGATTCGAACCTGTGACCGTTCGCTTAGAAGGCGAATGCTCTATCC 21122 |||||||||| ||||| ||||||||| |||| ||||||||||| |||||||||| Sbjct 37 TGGCGACCCCTGCAGGACTCGAACCTGCGACCTACTGCTTAGAAGGCAGTTGCTCTATCC 96 Query 21123 AGCTGAGCTACGGGGCCGATT 21143 || ||||||| ||||||| || Sbjct 97 AGTTGAGCTAAGGGGCCGTTT 117 >seq34483 Length=1392 Score = 84.2 bits (92), Expect = 6e-12 Identities = 63/74 (85%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 21063 TGGCGACCCCGACAGGATTCGAACCTGTGACCGTTCGCTTAGAAGGCGAATGCTCTATCC 21122 ||||| ||| ||||||||||||||||||||| ||||||||||| |||||||||| Sbjct 1311 TGGCGCGCCCTACAGGATTCGAACCTGTGACCTACGGCTTAGAAGGCCGGTGCTCTATCC 1252 Query 21123 AGCTGAGCTACGGG 21136 |||||||||| ||| Sbjct 1251 AGCTGAGCTAAGGG 1238 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 139067685363600