Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20arachidis_20[genbank_20GCA_5F001013415.1_202015-05-26] 130,300 sequences; 87,617,276 total letters Query= NC_023502.1 Length=109558 Score E Sequences producing significant alignments: (Bits) Value seq52587 89.7 4e-13 seq51736 89.7 4e-13 >seq52587 Length=1677 Score = 89.7 bits (98), Expect = 4e-13 Identities = 129/181 (71%), Gaps = 1/181 (1%) Strand=Plus/Plus Query 31224 CCTACTCGGGAAGCTGGAACGGCACGTTCAAGTGGGCCTGGACGGATAACCCGGCGTGGG 31283 ||||||| || |||| |||||| ||||||| ||||||||| | |||||||| ||| Sbjct 1492 CCTACTCAGGCGTCTGGGACGGCAGCTTCAAGTCGGCCTGGACCAACAACCCGGCCTGGA 1551 Query 31284 TGCTCTACGACATCATGACCAATGATCGCTTCGGTCTTGGCGAGGATATCGACGCCTCGC 31343 | || |||| || |||||||||||||| || || ||| || ||| | ||| | Sbjct 1552 TCACCTTCGACGTCGCTACCAATGATCGCTT-GGGCTGGGCAAGCGCATCAAGCCCTGGA 1610 Query 31344 AGGTGGACAAGTGGTCGCTCTACGAGATCGCGCAATACGCAGACCAGAACGTGCCCGATG 31403 ||| ||||||| |||||| ||||| || ||| |||||| |||||| || | Sbjct 1611 TGGTCGACAAGTACGAGCTCTATCGCATCGCTCAGTACTGCGACCAGCTCGTGCCGGACG 1670 Query 31404 G 31404 | Sbjct 1671 G 1671 >seq51736 Length=453 Score = 89.7 bits (98), Expect = 4e-13 Identities = 93/121 (77%), Gaps = 1/121 (1%) Strand=Plus/Minus Query 23966 CCGCGTCCTCGGCAGAAGCCGCGCTCTTCCAGTTGTCGCAGGCGTTCGCTTCCGGCACGC 24025 |||| |||| || || || ||||| |||||| | ||||||| | || |||||||| Sbjct 378 CCGCCGCCTCCGCTGAGGCTGCGCT-TTCCAGCTCGGGCAGGCGCTGGCGAGCGGCACGC 320 Query 24026 TGCGCGGCGAAGAACTGAACTCGGTTCTCGAACAGTCGCCCCGCCTTGCCCAGGCCATCG 24085 |||||||||| || |||||| ||||| || || |||| ||||| || |||||||||| Sbjct 319 TGCGCGGCGAGGAGCTGAACAGCGTTCTTGAGCAAACGCCGCGCCTGGCACAGGCCATCG 260 Query 24086 C 24086 | Sbjct 259 C 259 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 349904257297700