Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20arachidis_20[genbank_20GCA_5F001013415.1_202015-05-26] 130,300 sequences; 87,617,276 total letters Query= NC_023555.1 Length=43017 Score E Sequences producing significant alignments: (Bits) Value seq61204 196 1e-45 seq30007 163 8e-36 seq38429 147 6e-31 seq46473 107 5e-19 seq70398 98.7 3e-16 seq38457 93.3 1e-14 seq43729 86.0 2e-12 >seq61204 Length=720 Score = 196 bits (216), Expect = 1e-45 Identities = 357/511 (70%), Gaps = 14/511 (3%) Strand=Plus/Plus Query 14334 GTTGGCGTCGGCCACCCAGTACAATCGCTGTCGGATGTGCGGCGCACCGACGCCCGCAGC 14393 || || || ||||| |||||| ||||| | ||| |||||||||||||||| ||| || Sbjct 210 GTCGGAGTAGGCCAGCCAGTAAGCTCGCTCCCTGATATGCGGCGCACCGACGCTCGCTGC 269 Query 14394 GCATAAATCTGCCGCTGCGCT--GGCGTATCCCGCGTTTTCCAAGTCAGTTTGTACAATG 14451 | | || | || | | |||||||||| ||||| || |||||||||| | Sbjct 270 -CGTGAA-CGGCGTAATCCCAAAGGCGTATCCCATTCCTTCCAGATCTGTTTGTACAAGG 327 Query 14452 TCGAGCCAACCGAG---GCCGTCCTTGCTTGAAACCTGCTCACCAAAGACGACGCTAGGG 14508 |||| |||| || || | | |||| | ||| || || ||||| ||| ||| || Sbjct 328 TCGAACCAA--GAATTTGCGTTACCTGCT-GCAACTTGTTCGCCAAATACGT-GCTGAGG 383 Query 14509 CT-GCACTGGCTGATGAGATGGAAGAATGCCGGCCACAGGTGCCGCTCGTCAGCAACCCC 14567 || ||||| ||||| |||||| ||||| ||||||||||||||| ||| ||| Sbjct 384 CTTGCACTTTTCAATGAGCCACTGGAATGCTGGCCATAGGTGCCGCTCGTCATCAAACCC 443 Query 14568 TGCGCCTTTGCCTGCCGCGCTGAAAGGCTGGCAAGGGCAAGATCCGGTCCAGACCGGTCG 14627 || || ||||||| | |||||| |||||||| || || |||||||| || ||||| Sbjct 444 AGCTCCCGCGCCTGCCTGGGAGAAAGGTTGGCAAGGACAGGAACCGGTCCAAACAGGTCG 503 Query 14628 ATCATCCGGCCATCCTGCGCGGCGCAGGGCGAGCGACCATACTCCAATTCCGGCGAAGAA 14687 |||||| ||||| || || ||||| || ||| ||||| || || || ||||||||||| Sbjct 504 ATCATCTGGCCAGCCGGCACGGCGAAGAGCGTAGGACCACACCCCGATGCCGGCGAAGAA 563 Query 14688 GTGGCACTGGGTAAATTCGGTGAGTTCATTTGGTGTTATATCCTCGATCGATCGT-TCGT 14746 ||||| ||||| | |||| || |||||| | || | ||| | | | |||| Sbjct 564 ATGGCATTGGGTGTAGGGCTTGAGGTCGTTTGGTCGAACAT-CGCGAATGTCCCTCTCGT 622 Query 14747 CAACAATACCAGGGGCGATATGCCCTTCTGCGATAAGATTACGCAGCCATTGCGCGGCGT 14806 | || ||||| || || ||||| | | || || | |||||||| || || | Sbjct 623 CTACGTCGCCAGGCGCTATGTGCCCCGCGGAAATTAGGGTGCGCAGCCACGCGGCCGCAT 682 Query 14807 AGGGGTCAATTTCATTGTAATAGGCAGTCAT 14837 | ||||| || || ||||| ||||| | ||| Sbjct 683 ACGGGTCGATCTCGTTGTAGTAGGCGGCCAT 713 >seq30007 Length=31646 Score = 163 bits (180), Expect = 8e-36 Identities = 128/153 (84%), Gaps = 0/153 (0%) Strand=Plus/Minus Query 13876 ATGAATTCTTCTGCGAGCTGCGCACAGATGGCGTTCCCGTAGGCGCGCAATCGTCCCACT 13935 ||||||||| | |||| |||| |||||| || || || ||||||||||||||||| Sbjct 3388 ATGAATTCTGCGGCGACTTGCGGGACGATGGCATTGCCATAACCGCGCAATCGTCCCACT 3329 Query 13936 CGGGAGGTAATCCCATTAGCCAACGGGAATGTGCCGGGTTCAACTGGCCGCCACTTTCCA 13995 | || || |||||||| ||||| ||||||||||||||||||||||||||| |||||||| Sbjct 3328 CTGGCGGGAATCCCATGAGCCAGCGGGAATGTGCCGGGTTCAACTGGCCGTAACTTTCCA 3269 Query 13996 TCCCGGCAGCTGAGCCAGTCAGAATCTCGCCAG 14028 |||||||| | ||||||||||| |||| |||| Sbjct 3268 TCCCGGCATCCGAGCCAGTCAGCATCTGACCAG 3236 Score = 87.8 bits (96), Expect = 5e-13 Identities = 231/344 (67%), Gaps = 18/344 (5%) Strand=Plus/Minus Query 14369 TGTGCGGCGCACCGACGCC---CGCAGCGCATAAATCTGCCGCTGCGCTGGCGTATCCCG 14425 ||||||| || ||||||| ||| | ||| ||||||| ||| |||||| || Sbjct 2883 TGTGCGGGGCGCCGACGCTACACGCTGGCAATA---CTGCCGCCCCGCAGGCGTAACCTT 2827 Query 14426 CGTTTTCCAAGTCAGTTTGTACAATGTCGAGCCAACCGAGGCCGTCC--TTGCTT--GAA 14481 | ||||||| |||| || | |||||||| | ||| ||||| | | Sbjct 2826 CTCTTTCCAACTCAGCGAATAAATCATCGAGCCAGT----GTTTTCCAATTGCTGCCGCA 2771 Query 14482 ACCTGCTCACCAAAGACGACGCTAGGGCTGCACTGGCTGATGAGATGGAAGAATGCCGGC 14541 |||||||| ||||| | ||| ||||| |||||| || |||| | | || | ||| Sbjct 2770 ACCTGCTCGCCAAAAAGGACTGGAGGGCGGCACTGCGCGACGAGACGCATAAAGGTGGGC 2711 Query 14542 CACAGGTGCCGCTCGTCA-GCAACCCCTGCGCCTTTGCCTGCCGCGCTGAAAGGCTGGCA 14600 ||||| ||||||||| || || || ||| || || |||||||||||||||| Sbjct 2710 GCGAGGTGTCGCTCGTCAAGCTGTCCGAGCTGCTTC-CCGGCGACGCTGAAAGGCTGGCA 2652 Query 14601 AGGGCAAGATCCGGTCCAGACCGGTCGATCAT-CCGGCCATCCTGCGCGGCGCAGGGCGA 14659 ||| | ||||||||||| | | || | | |||| ||| || | |||| ||| Sbjct 2651 AGGTGGACTTCCGGTCCAGAGCCG-CGTTGTTGCCGGGATTCCGGCAAGCTGCAGTGCGT 2593 Query 14660 GCGACCATACTCCAATTCCGGCGAAGAAGTGGCACTGGGTAAAT 14703 |||| | || || |||||||||||||| || || |||||| Sbjct 2592 AACTCCATCCGCCGATGCCGGCGAAGAAGTGACATTGTGTAAAT 2549 >seq38429 Length=1166 Score = 147 bits (162), Expect = 6e-31 Identities = 114/136 (84%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 13876 ATGAATTCTTCTGCGAGCTGCGCACAGATGGCGTTCCCGTAGGCGCGCAATCGTCCCACT 13935 ||||||||| | || | |||| |||||| || ||||| |||||| |||||||||| Sbjct 136 ATGAATTCTGCGGCAACTTGCGGGACGATGGCATTGCCGTAACCGCGCAGTCGTCCCACT 77 Query 13936 CGGGAGGTAATCCCATTAGCCAACGGGAATGTGCCGGGTTCAACTGGCCGCCACTTTCCA 13995 | || || |||||||| |||||||||||||||||||| |||||||||||| |||||||| Sbjct 76 CTGGCGGGAATCCCATGAGCCAACGGGAATGTGCCGGATTCAACTGGCCGGAACTTTCCA 17 Query 13996 TCCCGGCAGCTGAGCC 14011 |||||||||| ||||| Sbjct 16 TCCCGGCAGCCGAGCC 1 >seq46473 Length=412 Score = 107 bits (118), Expect = 5e-19 Identities = 161/226 (71%), Gaps = 2/226 (1%) Strand=Plus/Minus Query 6159 CGAGTACCAAGTAACTATGACCCAGACACCCGCACCTATTCCGGCAATTGGGATGGGTCG 6218 || || |||| || ||||||||| | || ||||| |||| ||||| ||| || Sbjct 230 CGCGTCCCAACTACCTATGACCCCGTCAGCCGCAGCTATAACGGCACATGGTCAGGTGAT 171 Query 6219 TTTAAATGGGCCTACACCAACAATCCGGCGTGGGTATGGTACGACGTATTGACTCAACCG 6278 ||||| | |||||||||||||||||||| ||||| | ||||| | | || || | Sbjct 170 TTTAAGTACGCCTACACCAACAATCCGGCATGGGTCTTTTACGATCTGGT-TCTGGACAG 112 Query 6279 CGGTTCGGGCTTGGTAA-GCGCGTTACGGCGGCCATGCTAGATAAATGGGAGTTGTACCG 6337 || ||| ||| || ||| ||| || ||||| | || || |||||| ||||| | Sbjct 111 AATTTATGGCATGGGAACGCGTGTTGATGCTTCCATGATTGACAAGTGGGAGCTGTACAG 52 Query 6338 CATCGCACAGCGCTGCGATCAGATGGTGCCGGATGGTGCCGGTGGT 6383 |||||| || |||||||||| ||||| |||||||| || ||| Sbjct 51 CATCGCGCAATACTGCGATCAGCCTGTGCCAGATGGTGCTGGCGGT 6 >seq70398 Length=531 Score = 98.7 bits (108), Expect = 3e-16 Identities = 170/242 (70%), Gaps = 4/242 (2%) Strand=Plus/Minus Query 6159 CGAGTACCAAGTAACTATGACCCAGACACCCGCACCTATTCCGGCAATTGGGATGGGTCG 6218 || || |||| || ||||||||| | || ||| | |||| ||||| ||| || Sbjct 331 CGCGTCCCAACTACCTATGACCCGGTCAGCCGAAGCTATAACGGCACATGGTCAGGTGAT 272 Query 6219 TTTAAATGGGCCTACACCAACAATCCGGCGTGGGTATGGTACGACGTATTGACTCAACCG 6278 ||||| | |||||||||||||||||||| ||||| | ||||| | | || || | Sbjct 271 TTTAAGTACGCCTACACCAACAATCCGGCATGGGTCTTTTACGATCTGGT-TCTGGACAG 213 Query 6279 CGGTTCGGGCTTGGTAA-GCGCGTTACGGCGGCCATGCTAGATAAATGGGAGTTGTACCG 6337 || ||| ||| || ||| ||| || ||||| | || || |||||| ||||| | Sbjct 212 AATTTATGGCATGGGAACGCGTGTTGACGCTTCCATGATTGACAAGTGGGAGCTGTACAG 153 Query 6338 CATCGCACAGCGCTGCGATCAG-ATGGTGCCGGATGGTGCC-GGTGGTGTTGAGCCGCGT 6395 |||||| || |||| ||||| || ||| |||||||| || ||| ||||||||| Sbjct 152 CATCGCGCAATACTGCAATCAGCCTGTCGCCAAATGGTGCCTGGCGGTACTGAGCCGCGA 93 Query 6396 TT 6397 || Sbjct 92 TT 91 >seq38457 Length=3703 Score = 93.3 bits (102), Expect = 1e-14 Identities = 141/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 17211 TCCTGATACCGCTCAAACCAGAAAACAACCGGC-ATATCAATAACCTTAATAAGCCCGAA 17269 |||||||| |||||||||||||||||| ||| || || || | ||||| || | || Sbjct 777 TCCTGATATTTCTCAAACCAGAAAACAACTGGCGATGTCGTTA-CTTTAATTTGCGCAAA 719 Query 17270 TCGCTCCGCCGTGCGGAAATTTACGCTGCGTGACCGTGCGCGTTTTACCTGTTCTGCGAT 17329 || ||| || ||||||||||| || || | || ||| | || |||||| ||||| Sbjct 718 TCTCTCAGCAGTGCGGAAATTCACACTTGAAGCCCTTGCTCTTTCCACCTGTCTGGCGAT 659 Query 17330 CTGTTCTCGAAACATCTCTACACTAAAAGTTGCCTTAAATAGATTGCATGGAGCACAGGA 17389 || |||| || | || || || ||||| || || || | |||||| ||||| || | Sbjct 658 TTGCTCTCTGAATAATTCAACGCTGAAAGTAGCTTTGAACAAATTGCACGGAGCGCACGC 599 Query 17390 TGGGAACAGGTTTTCGAG 17407 || || | ||||| || Sbjct 598 CGGAAAATGATTTTCCAG 581 >seq43729 Length=1461 Score = 86.0 bits (94), Expect = 2e-12 Identities = 102/137 (74%), Gaps = 1/137 (1%) Strand=Plus/Plus Query 576 AAGCAGCTCACTGCCACCATGCGCGGCGTGCCGGCGCAGATCACGGACATCGTAA-CATC 634 ||||||| | || | ||||| || ||||||||||| ||||| || ||| | | || Sbjct 44 AAGCAGCAGGCCGCTGCGATGCGTGGTGTGCCGGCGCAAATCACCGATATCTTCGTCGTC 103 Query 635 CTTGCAGGGTGGCCAGCGCCCGTTAACGGTACTTATCCAGCAGGGCGGCCAATTGCGCGA 694 | ||||||| || ||| |||||| || || | | ||||||||||| || ||| || Sbjct 104 CCTGCAGGGCGGTCAGAACCCGTTGACTGTTTTGCTGCAGCAGGGCGGTCAGTTGAAGGA 163 Query 695 TATGTTTGGCGGCATCG 711 ||||||||| ||||||| Sbjct 164 TATGTTTGGTGGCATCG 180 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 137319993779400