Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20arachidis_20[genbank_20GCA_5F001013415.1_202015-05-26] 130,300 sequences; 87,617,276 total letters Query= NC_023557.1 Length=271084 Score E Sequences producing significant alignments: (Bits) Value seq36028 636 3e-177 seq34332 91.5 3e-13 >seq36028 Length=2231 Score = 636 bits (704), Expect = 3e-177 Identities = 750/1012 (74%), Gaps = 15/1012 (1%) Strand=Plus/Plus Query 71392 CAACTTTCATTCTTCTGGCGACCTGAAGAGGTGGATGTTTCGCAAGACCGTATCGACTTC 71451 || ||||| ||||||||||| |||||||| || ||||| || | || || ||||||| | Sbjct 3 CAGCTTTCGTTCTTCTGGCGTCCTGAAGAAGTCGATGTCTCACGCGATCGCATCGACTAC 62 Query 71452 CAGGGGTTGCCAGATCATGAAAAACACATCTTCGTTTCTAACCTGAAATACCAAACCCTG 71511 |||| |||| ||||||||||| || |||||| | |||||||||||||| || | Sbjct 63 CAGGCCCTGCCCGATCATGAAAAGCATATCTTCATCAGCAACCTGAAATACCAGACGTTA 122 Query 71512 CTGGACTCGATTCAGGGTCGTAGCCCGAACGTGGCCTTGCTGCCGATCTGTTCT--ATCC 71569 ||||||||||||||||| || |||||||||||||| |||||||| ||| ||| || | Sbjct 123 CTGGACTCGATTCAGGGACGCAGCCCGAACGTGGCACTGCTGCCG--CTGATCTCGATTC 180 Query 71570 CGGAACTCGAAACCTGGATTGAAACCTGGGCGTTCTCTGAAACGATTCACTCGCGCTCAT 71629 ||||||| ||||||||||| ||||||||||||||||| |||||||| ||||| ||||| | Sbjct 181 CGGAACTGGAAACCTGGATAGAAACCTGGGCGTTCTCCGAAACGATCCACTCTCGCTCGT 240 Query 71630 ACACCCACATCATCCGTAATATCTTTACTGACCCCTCCATCGTGTTTGATGACATCGTGA 71689 ||||||||||||| || || ||| | | || || || | |||||||| || ||||| | Sbjct 241 ACACCCACATCATTCGCAACATCGTGAACGATCCGTCTGTGGTGTTTGACGATATCGTCA 300 Query 71690 CCAACGAACACATCAAAGCGCGTGCTGAGTCCGTCACGGAGTATTACGACCAGCTGATCG 71749 ||||| | || || |||||||| || | || | |||| ||||| | ||||| | Sbjct 301 CCAACCAGCAGATTCTGGCGCGTGCGCAGGACATCTCTAAGTACTACGATGACCTGATTG 360 Query 71750 AAATGACCATGTACCTCAACTTACTGGGTGAAGGTACTCATGTAATCAATGGTAAGAAAG 71809 | ||||| | ||| | || |||||||||||||| ||| ||||||||||| Sbjct 361 AGATGACTAACTACTGGCATTTGCTGGGTGAAGGTACGCATCAGGTCAATGGTAAGTCCA 420 Query 71810 TCGTGGTCTCGATGCGTGCTATCAAGCGTCTGGTCTACCTGTGCATCGTGTCGGTCAACG 71869 | ||| |||| || | || | | | || | ||| | || ||||| | Sbjct 421 TTACGGTTAATGTGCGCGCGCTGAAAAAGCAGTTGTATATTTGCCTGATGAGCGTCAATG 480 Query 71870 TGTTGGAAGCCATCCGCTTCTATGTCTCGTTTGCCTGCTCGTTTGCCTTTGCTGAACGCG 71929 | ||||||| ||||||||||| ||| ||||||||||| ||||| |||||||| || | Sbjct 481 CGCTGGAAGCGATCCGCTTCTACGTCAGCTTTGCCTGCTCTTTTGCGTTTGCTGAGCGAG 540 Query 71930 AGCTGATGGAAGGCAACGCCAAGATCATTAAACTGATCGCCCGTGATGAAGCCCTGCATC 71989 | |||||||||||||||||||| ||||| || ||||| || || || ||||| ||||| | Sbjct 541 AACTGATGGAAGGCAACGCCAAAATCATCAAGCTGATTGCACGCGACGAAGCTCTGCACC 600 Query 71990 TGACCGGCACCCAGCACATGATCATGTTAATGAAGTCCGGTGCTGACGATGCTGAGATGG 72049 |||||||||||||||||||| | | | || |||||| |||||| |||| ||| Sbjct 601 TGACCGGCACCCAGCACATGCTGAATCTGCTGCGCACCGGTGAAGACGATCCTGAAATGA 660 Query 72050 CGGAAATCGTTAAAGAGTGTGAAGCAGAAACATACGCACTCTTTAAGGACGCTGCAGAGC 72109 ||||| | || || | ||| | || || |||||| | || || | Sbjct 661 AAGAAATTGCCGCCGAATGCCGTGAAGAGTGCTTCGAGCTGTTTAAGAAAGCGGCCTTAC 720 Query 72110 AGGAGAAAGACTGGGCGAACTATCTATTCCAGGACGGGTCGATGATCGGTCTGAACAAAG 72169 |||||||||| ||||| | || || ||| | ||| || ||||||||||||||||||| Sbjct 721 AGGAGAAAGAGTGGGCAGATTACCTGTTCAGCGGCGGCTCCATGATCGGTCTGAACAAAG 780 Query 72170 AGATCGTGTGCCAGTACATCGAATACATCACCAACATCCGTATTCGCGCCATCGGTTACG 72229 | ||| |||||||||| |||||||||||||||||||| ||||| | || | || || Sbjct 781 ATATCCTGTGCCAGTATATCGAATACATCACCAACATTCGTATGCAGGCGGTTGGCCTCG 840 Query 72230 ATGACATCTACGCCGGTGTCAAAG----CTAACCCAATCCCATGGATCAACTCCTGGTTG 72285 |||| |||| | || | | ||||| || || ||||||||| ||||| || Sbjct 841 -----ATCT--GCCGTTCGAAACGCGCTCGAACCCGATTCCCTGGATCAACGCCTGGCTG 893 Query 72286 GTTTCTGACAACGTGCAAGTCGCTCCACAGGAAGTGGAAGTAAGTTCTTATCTGGTCGGT 72345 || || || ||||| || || || || |||||||||||||| |||||||| ||||| ||| Sbjct 894 GTGTCCGATAACGTTCAGGTTGCCCCGCAGGAAGTGGAAGTCAGTTCTTACCTGGTGGGT 953 Query 72346 CAGATAGACTCGAAAGTGGACGCCAACGATTTCGACGATTTCCAACTGTAAC 72397 ||||| || || |||||| || ||||| |||||||| ||||| | |||| Sbjct 954 CAGATTGATTCAGAAGTGGGCGAAAACGACTTCGACGACTTCCAGTTATAAC 1005 >seq34332 Length=487 Score = 91.5 bits (100), Expect = 3e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 165194 TCTATAGTTCAGTCGGTAGAACAGCGGACTGTTAATCCGTAGGTCGCTGGTTCGAATCCA 165253 ||| |||||||||||||||||| |||||||||||||||||| ||| ||||||||| |||| Sbjct 356 TCTGTAGTTCAGTCGGTAGAACGGCGGACTGTTAATCCGTATGTCACTGGTTCGAGTCCA 297 Query 165254 GCTAGACCAGCCA 165266 | ||| ||||| Sbjct 296 GTCAGAGGAGCCA 284 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 865928118672000