Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20arachidis_20[genbank_20GCA_5F001013415.1_202015-05-26] 130,300 sequences; 87,617,276 total letters Query= NC_023561.1 Length=173276 Score E Sequences producing significant alignments: (Bits) Value seq33108 123 3e-23 seq49372 102 9e-17 seq66454 91.5 2e-13 seq47791 86.0 7e-12 seq34305 86.0 7e-12 seq36028 84.2 2e-11 >seq33108 Length=3479 Score = 123 bits (136), Expect = 3e-23 Identities = 131/173 (76%), Gaps = 0/173 (0%) Strand=Plus/Minus Query 61351 GTGAAAGTGCGTGAAATAACGTCGCGCTGTTGCTCTGGAGTTAGAGCATTAAAACGAACG 61410 || || || || | ||| ||||| |||||||| || || || || | |||||| || ||| Sbjct 2955 GTAAAGGTACGGGCAATGACGTCACGCTGTTGTTCAGGCGTCAGCGAATTAAAGCGCACG 2896 Query 61411 GCATAGCCAGAAACACGAATAGTCAGCTGAGGATATTTTTCTGGATGTTGAACTGCATCT 61470 ||||| || ||||||||||| |||||||| ||||| || || ||||||| || || ||| Sbjct 2895 GCATACCCGGAAACACGAATGGTCAGCTGCGGATACTTCTCAGGATGTTTCACGGCGTCT 2836 Query 61471 TCTAAAGTTTCTTTAGACAGCACGTTCACGTTCAAATGCTGTCCACCTTCAAC 61523 || | ||||| ||| ||||| ||||| || ||||| || ||||| || Sbjct 2835 TCCAGCGTTTCACGGCGCAGGACGTTAACGTTTAAGTGCTGCCCGCCTTCCAC 2783 >seq49372 Length=1062 Score = 102 bits (112), Expect = 9e-17 Identities = 164/228 (72%), Gaps = 12/228 (5%) Strand=Plus/Plus Query 66778 GTTTTGTTTAAAGCGTTTGACATAATCTGTCTTT-CCAAGTTTCTTATGCATTGCAACTA 66836 ||||| ||| || ||||| | |||||| |||| |||| ||| || ||| ||||| Sbjct 279 GTTTTCTTTGAAACGTTTAATATAATCA-TCTTCGCCAAATTTACGATACATATTAACTA 337 Query 66837 TCTTATGGTAGTTTTCCCATGCATATTCACGGAACCATCCAGATGTAATGCTAGTACAAA 66896 ||| | || ||||| | | |||| | |||||||| || ||||| ||| |||| | Sbjct 338 CTGTATTAAAATTCTCCCAAGAAAATTCTCTAAACCATCCTGACGTAATACTACTACACA 397 Query 66897 CTTTTTCCAAAGC-GTACATAAA----TGAACCGGTAGGGTCCGGGTTGAAATTATTTGG 66951 |||| | ||||| ||| ||||| ||| || ||| || | |||||||| || Sbjct 398 CTTTAACTAAAGCAGTA-ATAAAACTCTGA--CG--AGGATCAATTTCAAAATTATTAGG 452 Query 66952 AATTTGATGACGTTCTAAAGCAAGTACACAAGTTTCTTCATATACACC 66999 ||||| ||||||||| ||||| ||||| ||||||||||||||||| Sbjct 453 GATTTGTGAACGTTCTAATGCAAGAACACATGTTTCTTCATATACACC 500 >seq66454 Length=1623 Score = 91.5 bits (100), Expect = 2e-13 Identities = 70/83 (84%), Gaps = 0/83 (0%) Strand=Plus/Plus Query 74606 ATTTGGTGACCCCAGCAGGACTCGAACCTGCAACCTAGCGATTATGAGTCGCGTGCTCTA 74665 ||||||||| ||| || ||||||||||| || ||| ||| ||||||||| || ||||||| Sbjct 1211 ATTTGGTGATCCCTGCTGGACTCGAACCAGCGACCGAGCAATTATGAGTTGCCTGCTCTA 1270 Query 74666 ACCAATTGAGCTATAGGGCCAAA 74688 ||||| ||||||| || ||||| Sbjct 1271 ACCAACTGAGCTAAGGGACCAAA 1293 >seq47791 Length=2831 Score = 86.0 bits (94), Expect = 7e-12 Identities = 80/98 (82%), Gaps = 4/98 (4%) Strand=Plus/Minus Query 76069 TGGAGGAAGCGGTGGGATTCGAACCCACGGACCG-TATCACTACGGCCTCCGGTTTTCAA 76127 ||||||||| |||||||||||||||||||| | ||| | || ||| || ||||||| Sbjct 1130 TGGAGGAAGATGTGGGATTCGAACCCACGGAGGGCTATTA--ACCCCCTTCGATTTTCAA 1073 Query 76128 GACCGGTGTAATAAGCCGCTCTACCACGCTTCCGAATT 76165 ||||| || ||||| ||||||||||| ||||| |||| Sbjct 1072 GACCGATGCAATAAACCGCTCTACCAATCTTCC-AATT 1036 >seq34305 Length=2218 Score = 86.0 bits (94), Expect = 7e-12 Identities = 122/172 (71%), Gaps = 0/172 (0%) Strand=Plus/Plus Query 61351 GTGAAAGTGCGTGAAATAACGTCGCGCTGTTGCTCTGGAGTTAGAGCATTAAAACGAACG 61410 || || || || | ||| ||||| |||| |||||| || || | ||||| |||||| Sbjct 599 GTAAAGGTACGGGTAATCACGTCCTGCTGCTGCTCTTTGGTGAGCGAGTTAAAGCGAACG 658 Query 61411 GCATAGCCAGAAACACGAATAGTCAGCTGAGGATATTTTTCTGGATGTTGAACTGCATCT 61470 |||||||| ||||| || || || | |||||||||||| || || | | | ||| || Sbjct 659 GCATAGCCCGAAACGCGGATGGTTAACTGAGGATATTTCTCAGGGTTATCCATTGCGTCC 718 Query 61471 TCTAAAGTTTCTTTAGACAGCACGTTCACGTTCAAATGCTGTCCACCTTCAA 61522 || |||| || |||||| || |||| |||||| || ||||||| Sbjct 719 ATCAACATTTCCCGGTTCATCACGTTAACATTCAGATGCTGGCCGCCTTCAA 770 >seq36028 Length=2231 Score = 84.2 bits (92), Expect = 2e-11 Identities = 87/114 (76%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 143830 ACGATTTCATCAAACACCTTTGCCGGGTCATTCAGCAAGTTACGCATGATGTGCGTATAT 143889 ||||| || ||||||||| | ||| || |||| | ||| || |||||||| || || Sbjct 298 ACGATATCGTCAAACACCACAGACGGATCGTTCACGATGTTGCGAATGATGTGGGTGTAC 239 Query 143890 GAACGAGAGTGAATCGTTTCGGAGAACGTCCAAGTCTGGTTCCATGTATCAAGT 143943 || |||||||| |||||||||||||||| ||| || | |||| || || ||| Sbjct 238 GAGCGAGAGTGGATCGTTTCGGAGAACGCCCAGGTTTCTATCCAGGTTTCCAGT 185 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 553452293968000