Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20arachidis_20[genbank_20GCA_5F001013415.1_202015-05-26] 130,300 sequences; 87,617,276 total letters Query= NC_023575.1 Length=45550 Score E Sequences producing significant alignments: (Bits) Value seq16638 167 7e-37 seq45329 147 6e-31 seq23889 143 8e-30 seq29027 118 3e-22 seq4145 118 3e-22 seq49783 96.9 1e-15 seq40890 84.2 6e-12 seq37297 82.4 2e-11 >seq16638 Length=4153 Score = 167 bits (184), Expect = 7e-37 Identities = 172/225 (76%), Gaps = 0/225 (0%) Strand=Plus/Plus Query 30056 CCGCCAAACATCTGCATCTGCCCGTGCATGTCGACGATGATCTCTGTTGTGTAGCGGTCC 30115 || || | || |||||| | |||| |||||||| | ||| || || |||||||| ||| Sbjct 3929 CCACCCAGCAACTGCATGTTGCCGTTGATGTCGACCACGATTTCGGTGGTGTAGCGATCC 3988 Query 30116 TGACCGTCCTGCGCCTGCCACTTTCGAGTTCTGAGTGAACCCTCGACGTACAGTTGCTGA 30175 ||||||||||| ||||||| || || || | || | |||||||| || | || Sbjct 3989 TGACCGTCCTGGCCCTGCCATTTGCGGGTACGCAGAGTGCCCTCGACATAGACCTGGGAG 4048 Query 30176 CCCTTCTTTACGTGCTGCCCGACGATCTCCGCCAACTTCCCGAAGAACACCACGCGGTGC 30235 ||||| | || || ||| ||||||| || | ||||||||||||||||||||| Sbjct 4049 CCCTTGCGGATGTACTCGCCGGCGATCTCGGCGAGACGACCGAAGAACACCACGCGGTGC 4108 Query 30236 CATTCGGTGCGCTCCTGTTGCTGGCCGGTCTGCTTGTCCTTCCAG 30280 ||||||||||| ||||| ||||| ||||||||||||||||||||| Sbjct 4109 CATTCGGTGCGGTCCTGCTGCTGACCGGTCTGCTTGTCCTTCCAG 4153 >seq45329 Length=597 Score = 147 bits (162), Expect = 6e-31 Identities = 107/124 (86%), Gaps = 0/124 (0%) Strand=Plus/Plus Query 30264 TCTGCTTGTCCTTCCAGCTCTCGCTGGTGGCGAGGGTGATGTTGGTCACCGCATTGCCGT 30323 ||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||| Sbjct 1 TCTGCTTGTCCTTCCAGCTCTCGCTGGTGGCCAGGGTGACGTTGGTCACCGCATTGCCGT 60 Query 30324 TGGGCATATAGCGAGTTTCCGGGTCACCACCGACGTTGCCAACCAGAATGACTTTGTTAA 30383 ||||||| || || ||||| || || | ||| | ||||| || || |||||||| || | Sbjct 61 TGGGCATGTAACGGGTTTCGGGATCGGCGCCGGCATTGCCGACGAGGATGACTTTATTGA 120 Query 30384 CGCC 30387 |||| Sbjct 121 CGCC 124 >seq23889 Length=1023 Score = 143 bits (158), Expect = 8e-30 Identities = 106/124 (85%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 30264 TCTGCTTGTCCTTCCAGCTCTCGCTGGTGGCGAGGGTGATGTTGGTCACCGCATTGCCGT 30323 ||||||||||||||||||| ||||||||||| ||||||| |||||||||||||||||||| Sbjct 1023 TCTGCTTGTCCTTCCAGCTTTCGCTGGTGGCCAGGGTGACGTTGGTCACCGCATTGCCGT 964 Query 30324 TGGGCATATAGCGAGTTTCCGGGTCACCACCGACGTTGCCAACCAGAATGACTTTGTTAA 30383 ||||||| || || ||||| || || | ||| | ||||| || || |||||||| || | Sbjct 963 TGGGCATGTAACGGGTTTCGGGATCGGCGCCGGCATTGCCGACGAGGATGACTTTATTGA 904 Query 30384 CGCC 30387 |||| Sbjct 903 CGCC 900 >seq29027 Length=2418 Score = 118 bits (130), Expect = 3e-22 Identities = 226/333 (68%), Gaps = 0/333 (0%) Strand=Plus/Plus Query 30055 TCCGCCAAACATCTGCATCTGCCCGTGCATGTCGACGATGATCTCTGTTGTGTAGCGGTC 30114 ||| || | ||||||||| ||| || || ||| | | ||| || ||||| || || Sbjct 827 TCCACCCAGCATCTGCATGGTGCCGCCCACGTTGACAACCACCTCCGTGGTGTAACGTTC 886 Query 30115 CTGACCGTCCTGCGCCTGCCACTTTCGAGTTCTGAGTGAACCCTCGACGTACAGTTGCTG 30174 ||||||| |||| ||||||| || || || | || || || | |||| || Sbjct 887 CTGACCGCCCTGATCCTGCCATTTACGGGTGCGCAGCTGGCCTTCAATATACACCTGAGA 946 Query 30175 ACCCTTCTTTACGTGCTGCCCGACGATCTCCGCCAACTTCCCGAAGAACACCACGCGGTG 30234 ||| || | || | ||| | | ||||||| || || || | ||| || ||||| Sbjct 947 ACCTTTACGCAGGTATTCCCCCGCCACTTCCGCCAGTTTGCCAAACAGCACGACACGGTG 1006 Query 30235 CCATTCGGTGCGCTCCTGTTGCTGGCCGGTCTGCTTGTCCTTCCAGCTCTCGCTGGTGGC 30294 |||||||||| ||| | | | |||||||||||||| ||||||||| ||| || Sbjct 1007 CCATTCGGTGATCTCTTTGTTTTCACCGGTCTGCTTGTCGCGCCAGCTCTCAGAGGTAGC 1066 Query 30295 GAGGGTGATGTTGGTCACCGCATTGCCGTTGGGCATATAGCGAGTTTCCGGGTCACCACC 30354 || || ||||||| || || || || ||||| || || |||||| || ||| Sbjct 1067 CAGCGTAATGTTGGCGACAGCGCCACCATTTGGCATGTAACGTACTTCCGGATCCTGACC 1126 Query 30355 GACGTTGCCAACCAGAATGACTTTGTTAACGCC 30387 | || || || ||||| |||||||||||||| Sbjct 1127 CAGATTCCCGACAAGAATCACTTTGTTAACGCC 1159 >seq4145 Length=6487 Score = 118 bits (130), Expect = 3e-22 Identities = 67/68 (99%), Gaps = 0/68 (0%) Strand=Plus/Plus Query 21471 ACGGATTCGAAATCCGTTGAGTCAGCAATGGCTCCTAGGGTTCAAATCCCTATCTCTCCG 21530 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 3571 ACGGATTCGAAATCCGTTGAGTCAGCAATGGCTCCTAGGGTTCAAATCCCTATCTCTCCG 3630 Query 21531 CCATATAC 21538 ||| |||| Sbjct 3631 CCAAATAC 3638 >seq49783 Length=1506 Score = 96.9 bits (106), Expect = 1e-15 Identities = 59/63 (94%), Gaps = 0/63 (0%) Strand=Plus/Minus Query 21471 ACGGATTCGAAATCCGTTGAGTCAGCAATGGCTCCTAGGGTTCAAATCCCTATCTCTCCG 21530 ||||||||||||||||||| |||||||||||| |||||||||| |||||||||||| ||| Sbjct 1454 ACGGATTCGAAATCCGTTGTGTCAGCAATGGCACCTAGGGTTCGAATCCCTATCTCCCCG 1395 Query 21531 CCA 21533 ||| Sbjct 1394 CCA 1392 >seq40890 Length=365 Score = 84.2 bits (92), Expect = 6e-12 Identities = 144/198 (73%), Gaps = 11/198 (6%) Strand=Plus/Plus Query 30194 CCGACGATCTCCGCCAA-CTTCCCGAAGAACACCACGCGGTGCCATTCGGTGCGCTCCTG 30252 ||| ||||||| ||||| ||| ||||||||||| ||||||||||| |||||||| ||||| Sbjct 52 CCGGCGATCTC-GCCAAGCTTTCCGAAGAACACGACGCGGTGCCACTCGGTGCGTTCCTG 110 Query 30253 TTGCTGGCCGGTCTGCTTGTCCTTCCAGCTCTC-GCTGGTGGCGAGGGTGATGTTGGTCA 30311 || | ||| ||| || ||||| | || | | | ||||||| ||| |||| ||| | Sbjct 111 CTGGTTGCC-GTC-GC-GATCCTTGC-GCACGCTGGTGGTGGCCAGGCTGATCCGGGTGA 166 Query 30312 CCGCATTGCCG--TTGGGCATATAGCGAGTTTCCGGGTCACCACCGACGTTGCCAACCAG 30369 || ||||| |||| | || || || || || |||| |||||| || || Sbjct 167 TGGCCATGCCGGCCTGGG--TGTACTTGGTGTCGGGATCGTTGCCGAGGTTGCCGACGAG 224 Query 30370 AATGACTTTGTTAACGCC 30387 ||||||||||| | ||| Sbjct 225 GATGACTTTGTTGATGCC 242 >seq37297 Length=2184 Score = 82.4 bits (90), Expect = 2e-11 Identities = 47/48 (98%), Gaps = 0/48 (0%) Strand=Plus/Minus Query 21491 GTCAGCAATGGCTCCTAGGGTTCAAATCCCTATCTCTCCGCCATATAC 21538 ||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 120 GTCAGCAATGGCTCCTAGGGTTCAAATCCCTATCTCTCCGCCAAATAC 73 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 145413051883200