Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20arachidis_20[genbank_20GCA_5F001013415.1_202015-05-26] 130,300 sequences; 87,617,276 total letters Query= NC_023688.1 Length=222006 Score E Sequences producing significant alignments: (Bits) Value seq38626 199 6e-46 seq31280 183 4e-41 seq57967 100 4e-16 seq52264 96.9 5e-15 seq40411 96.9 5e-15 seq103771 93.3 6e-14 >seq38626 Length=1471 Score = 199 bits (220), Expect = 6e-46 Identities = 266/367 (72%), Gaps = 7/367 (2%) Strand=Plus/Minus Query 28665 AACATACGGTGCCAGCACTTCGTCAATGCGATTGATTGTGTTACCGCCATAAATGTGACT 28724 |||||| ||||||||||| |||||||| ||||| | ||| | |||||||| || || || Sbjct 1002 AACATAGGGTGCCAGCACCTCGTCAATACGATTCAGCGTGGTTCCGCCATAGATATGGCT 943 Query 28725 TGCTACTTGAGCGATGATTTGAGCAATCACGGCAGCAGCGGTAGAAATGCTTTTCGGAGT 28784 || || || || |||||||| ||| |||| |||| ||||||| ||| | || | Sbjct 942 GGCAACCTGGGCAATGATTTGCGCAGTCACCGCAGTGGCGGTAGCAATCGACCTGGGCGG 883 Query 28785 CTCGATTTGAGCATTACCCATTCTGAAACCACGTT--TCAACATTCCTTCAACATCTATC 28842 |||||| | || || |||||| | ||||| ||| ||| ||| |||| | ||| ||| Sbjct 882 CTCGATCTCCGCGTTGCCCATTTTAAAACC--GTTGGTCAGCATGCCTTTCAGATCGATC 825 Query 28843 AACATGCAGTTAAACATTGGGAAGAACGGTGAATAATCAAGATCGTGGAAGTGAATCCAA 28902 | ||||||||||||||| |||||||| || | ||||| |||||||| | || ||| Sbjct 824 AGCATGCAGTTAAACATGGGGAAGAAAGGCGCGTAATCGAGATCGTGATAATGGATCTCG 765 Query 28903 CCATTTTCGTGTGCTTGCATAACTTCAACAGGCAG---ATAATGCTTGGCGAAATGCTTA 28959 || || || || || | || ||| |||||| | |||| |||| |||| || Sbjct 764 CCGCGCTCATGCGCCTGAACCACATCACGAGGCAGGATTTGCTGCTGGGCGTAATGTTTC 705 Query 28960 CTAACGATACCAGCTACCAAATCGCGTTGAGTTGGAATTACCTTGGCGTCTTTGTTTGCA 29019 || || || || | |||||||||||| || || || || ||| |||||| || ||| Sbjct 704 GCCACAATCCCGGCCAGCAAATCGCGTTGGGTCGGGATCACTTTGCTGTCTTTATTGGCA 645 Query 29020 TTTTCAT 29026 ||||||| Sbjct 644 TTTTCAT 638 >seq31280 Length=10079 Score = 183 bits (202), Expect = 4e-41 Identities = 317/457 (69%), Gaps = 4/457 (1%) Strand=Plus/Plus Query 32761 GGACTAAACAGCGTGATATAATCATCGTTTTTCAGACGTTCCCAGAACATTTTATTGATT 32820 || |||||||||||||| | || | || ||| || | | | |||||| |||| Sbjct 1288 GGGCTAAACAGCGTGATGTCCTCGCCCTTCAGCAGGCGCTGGTACATCATTTTGTTGAGC 1347 Query 32821 TGGATACCGTAGTCCAAGTGTCTGATTCGATTTTCTTCCACACCCTTGTTGTTCTTGAGC 32880 || | ||||||||||| ||| | | || || |||||||||| |||||| || || Sbjct 1348 TGCACACCGTAGTCCATGTGACGTACGCGGTTACCTTCCACACCACGGTTGTTTTTCAGG 1407 Query 32881 ACAAGGATTTTTTCAACTTCAAGATGCCACATCGGATAATACAGAGTAGCAGCGCCACCA 32940 || | | |||| ||||| ||||||||||||||||| |||| || || ||||| ||| Sbjct 1408 ACTAACAGGCTTTCTACTTCCAGATGCCACATCGGATAGAACAGCGTCGCTGCGCCGCCA 1467 Query 32941 CGTACACCGCCCTGTGAGCAGCTTTTTACCGCAGTCTGAAAGTATTTCCAGAATGGGATA 33000 || || |||||||| || ||| ||| ||||| ||||| |||| || |||| |||||| Sbjct 1468 CGGACGCCGCCCTGCGAACAGGATTTCACCGCTGTCTGGAAGTGCTTGTAGAACGGGATA 1527 Query 33001 ATACCAGTATGACGAACCTCGCCAGAACGAATTCTAGAGCCTTCAGCACGAATAGCACCA 33060 ||| ||||| | | || || ||||| ||| || || ||| ||| Sbjct 1528 CAACCGGTATGGAAAGCTTCACCGCCGCGAATCGGGCTGCCCAGCGCGCGGATACGACCC 1587 Query 33061 CCATTGATACCGATACCAGCTCTCTTGCTGATA--TAGTCAACGATAGAACTAGCGGTTG 33118 | || ||||| ||||| || | ||| ||| | || | || |||| || | ||| | Sbjct 1588 GCGTTAATACCAATACCTGCGC-GTTG-TGAAACGTATTTCACAATAGCGCTGGAGGTCG 1645 Query 33119 CGTTAATGCTATCGAGTTCATCACCACTTTCAATCTTGACGCATGAGCTAAACTGACGGG 33178 |||| ||| ||| || || |||| ||||||| ||| || ||||| |||||||||| Sbjct 1646 CGTTGATGGAATCCAGGCTGTCGCCACATTCAATCAGGACACAGGAGCTGAACTGACGGG 1705 Query 33179 TCGGAGTACGAACACCAGCCAGAATAGGAGTCGGAAG 33215 | || ||||| || || | || || || ||||| || Sbjct 1706 TTGGCGTACGCACTCCCGACATGATTGGCGTCGGCAG 1742 >seq57967 Length=406 Score = 100 bits (110), Expect = 4e-16 Identities = 109/145 (75%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 28661 TTTTAACATACGGTGCCAGCACTTCGTCAATGCGATTGATTGTGTTACCGCCATAAATGT 28720 ||| |||||| ||||||||||| |||||||| ||||| | ||| | |||||||| || | Sbjct 145 TTTCAACATAGGGTGCCAGCACCTCGTCAATTCGATTCAGCGTGGTTCCGCCATAGATAT 86 Query 28721 GACTTGCTACTTGAGCGATGATTTGAGCAATCACGGCAGCAGCGGTAGAAATGCTTTTCG 28780 | || || || || || |||||||| || |||| |||| ||||||| ||| | | Sbjct 85 GGCTGGCAACCTGGGCAATGATTTGCGCGGTCACCGCAGTGGCGGTAGCAATCGACCTGG 26 Query 28781 GAGTCTCGATTTGAGCATTACCCAT 28805 | | |||||| | || |||||||| Sbjct 25 GCGGCTCGATCTCCGCGTTACCCAT 1 >seq52264 Length=2351 Score = 96.9 bits (106), Expect = 5e-15 Identities = 70/80 (88%), Gaps = 1/80 (1%) Strand=Plus/Minus Query 95850 TTCTCAGGGGCGGTAGGAGTCGAA-CCCACCTCAACGGATTTGGAATCCGCCGCATAACC 95908 || ||||||| |||||| ||||| ||||||||||||||||||||||||| ||||||||| Sbjct 1609 TTGTCAGGGGTTGTAGGAATCGAAACCCACCTCAACGGATTTGGAATCCGTCGCATAACC 1550 Query 95909 GATTTGCTACGCCCCTATAT 95928 | ||||||| |||||| || Sbjct 1549 GCTTTGCTAAACCCCTAGAT 1530 >seq40411 Length=1793 Score = 96.9 bits (106), Expect = 5e-15 Identities = 274/414 (66%), Gaps = 13/414 (3%) Strand=Plus/Minus Query 27255 ATGTTTAACACGTTTTTGCACTTCGTCCTGCTTGCCGGCATTAAATGCGCGAGAACCGGG 27314 ||||||||| || |||||||| | || || || |||||||| | ||| | | || Sbjct 933 ATGTTTAACCCGACGCTGCACTTCCTGTTGTTTTCCCGCATTAAACGGGCGCGCGTCCGG 874 Query 27315 GTTCCCCAAATAACCGCAGACGCGACGAATAACGTTCATTTTGGTATCATCATGATTGCC 27374 | |||| ||| || || || || || | || | | | ||| |||||||| Sbjct 873 ACTGCCCAGATAGCCACAAACCCGCCGTGTGACCGAAACCCGTGCAGGATCGTGATTGCC 814 Query 27375 GCACTTAGGACATTCATATCCTTTAGATGTAGCAGTGAATTCGCCGTGATAACCGCATTC 27434 ||| || || || | |||| ||| |||||||| |||| | || || || Sbjct 813 GCAGTTCGGGCAGGTAAATCCGCGGCTGGTACAGGTGAATTCCCCGTTGAAGCCACAGTC 754 Query 27435 AAAACAAACATCAACTGGGGTATTGGTCCCATAATACGGG--GTATTCCTATAAGCATAA 27492 |||| | |||| ||| || ||||| || || || || | || || | ||| Sbjct 753 GTAACATTCGTCAATTGGCGTGTTGGTGCCGTAGTAAGGCACGCGGTCGTAGCTG--TAA 696 Query 27493 TCCCAAACATCTTCGAGAGCTTTCAGATTATCTTTCATATTCGGATATTCACCGTATGAA 27552 ||||| || ||||| || || || || || | | || ||| |||||||| ||||| | Sbjct 695 TCCCAGACGTCTTCCAGCGCCTTAAGGTTGTGCTGCACATTGGGATATTCGCCGTAACAG 636 Query 27553 ATAAAACCACCA---GAACTAAGCGGA-ATGAATTGCTTTTCAAAATCGATCTTGTCATA 27608 |||||||| ||| || ||||| | | | |||| |||||||||| || || || Sbjct 635 ATAAAACCGCCATTGGAGAGTGGCGGATAGGGA--GCTT--CAAAATCGATTTTTTCGTA 580 Query 27609 CGGATTTGTATTATGACGAACGTCCAGATGGAAACTGTTGGTATAATAATCCTT 27662 ||||| || | ||||||||||||||| |||||||| |||||| |||| Sbjct 579 AGGATTCACCTTCTTCTCAACGTCCAGATGGAAGCTGTTGGTGTAATAA-CCTT 527 >seq103771 Length=482 Score = 93.3 bits (102), Expect = 6e-14 Identities = 164/237 (69%), Gaps = 4/237 (2%) Strand=Plus/Plus Query 28795 GCATTACCCATTCTGAAACCACGTTTCAACATTCCTTCAACATCTATCAACATGCAGTTA 28854 || ||||||||| |||| || | ||| ||| || | | ||| |||| |||||||||| Sbjct 24 GCGTTACCCATTTTGAAGCCGTGCGTCAGCATGCCGTGCAGATCGATCAGCATGCAGTTA 83 Query 28855 AACATTGGGAAGAACGGTGAAT-AATCAAGATCGTGGAAGTGAATCCAACCATTTTCGTG 28913 ||||| |||||||| || || | | || || ||||| |||| ||| ||| ||| || Sbjct 84 AACATCGGGAAGAAGGGAGAGTGAGTCGAGGTCGTGATAGTGGATCTCCCCACGTTCATG 143 Query 28914 TGCTTGCATAACTTCAACAGGCAG---ATAATGCTTGGCGAAATGCTTACTAACGATACC 28970 || ||| || || ||||| | |||| ||| |||| || ||||| || Sbjct 144 CGCCAGCACCACATCGCGCGGCAGCAACTGCTGCTGGGCATAATGTTTGGCCACGATGCC 203 Query 28971 AGCTACCAAATCGCGTTGAGTTGGAATTACCTTGGCGTCTTTGTTTGCATTTTCATT 29027 || | || ||||| || || || || || ||| ||||||||| || ||||| || Sbjct 204 GGCCAGCAGGTCGCGCTGCGTCGGGATCACTTTGCTGTCTTTGTTAGCGTTTTCGTT 260 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 709134313208000