Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20arachidis_20[genbank_20GCA_5F001013415.1_202015-05-26] 130,300 sequences; 87,617,276 total letters Query= NC_023694.1 Length=78064 Score E Sequences producing significant alignments: (Bits) Value seq100385 232 3e-56 >seq100385 Length=621 Score = 232 bits (256), Expect = 3e-56 Identities = 396/562 (70%), Gaps = 28/562 (5%) Strand=Plus/Minus Query 16767 GCTGAGAAAGCACCTGCATCTCG-AAACGATATCTTGGCTAAGCGATTCGGAATCCCTAT 16825 || ||||| || || || | || ||||||||| |||||||||| ||||| || || || Sbjct 606 GCAGAGAAGGCTCCGGCCGCACGCAAACGATATTCTGGCTAAGCGTTTCGGCATTCCGAT 547 Query 16826 GGAGGGT-TACACCTACTTCTTCACTTACGAAGAGACGATTCCTCAT----CGTCGTCAA 16880 |||||| ||||| |||| |||||| ||||| |||||| | || || || | || Sbjct 546 GGAGGGGGTACACATACTACTTCACGTACGACGAGACGCTACCGCAGAAAGCGGCTGCAG 487 Query 16881 AGCTTCTGGCGCCA-GCCTTGTGCTCTAGGCGCTGACCTTTCGCAGGGTGACGACTTCTG 16939 | |||| | | | ||| || || || || || ||| | |||||||| ||||||||||| Sbjct 486 AACTTC-GACAAGATGCCGTGCGCGCTTGGTGCAGACTTGTCGCAGGGGGACGACTTCTG 428 Query 16940 TGCGTTCACTTTCTTCTTCCCGCT-----------TC--GTAACGGGAAG--TTCGGAGT 16984 |||||||| ||| | |||||||| || | | || ||| | ||| | Sbjct 427 CGCGTTCACCTTCCTGTTCCCGCTCGACTCAGTGATCCAGCATCGAGAACGCTACGGCAT 368 Query 16985 CAAGACTCGCAGCTACATCACCGAACTTACGTTGATGAAGTTGCCTGGCGCTCTCCGACA 17044 ||| ||||| ||||| || ||||| || ||| | |||||| |||||||||| || Sbjct 367 CAAAACTCGAAGCTATATTACCGAGCT-ACGCTCATGAAGCTGCCTGGCGCCGCTCGCGC 309 Query 17045 CAAGTACGACGAGTTCGTTGCTGAAGGCAGCTTGCACGTCATGCCCGGCACTATCTTGGA 17104 |||||| | |||||| | ||||| || | || || |||| ||| |||| Sbjct 308 CAAGTATCAAGAGTTCATCAACGAAGGTAGTCTCATTATCCTGGACGGCGCTACGCTGGA 249 Query 17105 GATGATGGACGTCTATGACGACCTCGACAATCATATCCAAGACTGCGAGTACGATGTCCG 17164 ||||||| ||||| |||||||| || | | ||||| | || ||||||| || Sbjct 248 CATGATGGTGGTCTACGACGACCTTGAGAGT-ATATCGATCACCATCAGTACGACACCCT 190 Query 17165 AGCTTTGGGCTTCGACCCGTACAACGCAAAAGAGTTCGTTGCCCGCTGGGAAGCT-GAGA 17223 || | || | ||||| |||||||| ||||| || || || || ||||| ||| |||| Sbjct 189 GGCGCTTGGGTATGACCCTTACAACGCCAAAGAATTTGTCGCACGGTGGGA-GCTCGAGA 131 Query 17224 ACGGACCATTCGGCATCGAGAAGGTTATCCAGGGTTCCAAGACCGAATCGGTTCCTCTGG 17283 ||||||| | ||| |||||||||||||| |||||| || ||||| ||||| ||| Sbjct 130 ACGGACCCTACGGAATCGAGAAGGTTATTCAGGGTGTGCGCACTGAATCCGTTCCGTTGG 71 Query 17284 GTGAGCTCAAGATTCTGAGTGA 17305 | || ||||||| |||||||| Sbjct 70 GCGAACTCAAGA-GCTGAGTGA 50 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 249283500357500