Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20arachidis_20[genbank_20GCA_5F001013415.1_202015-05-26] 130,300 sequences; 87,617,276 total letters Query= NC_023704.1 Length=51421 Score E Sequences producing significant alignments: (Bits) Value seq77134 129 2e-25 seq27079 80.6 9e-11 >seq77134 Length=829 Score = 129 bits (142), Expect = 2e-25 Identities = 210/309 (68%), Gaps = 40/309 (13%) Strand=Plus/Minus Query 40256 GCCGTGCGCCAGCACGTTCGCCGCCACGGTGCCCGCCAGCGGTTTTCGCGCGACCACGAT 40315 ||| |||||||||||||||||||| |||||||| | ||| || || || ||||| ||| Sbjct 829 GCCATGCGCCAGCACGTTCGCCGCGACGGTGCCGGACAGAGGCTTGCGGGCGACGGTGAT 770 Query 40316 GGGCTCAAAGGCGGGTTTCAGCGCGGTGCCCCAGCCCTGCCACTGCTTGACGGCATCGGT 40375 ||||| | |||||| || || ||||||||||||| ||||| | Sbjct 769 CGGCTCCAGGGCGGGCTTGAGGGCGGTGCCCCAGCT-TGCCAGT---------------- 727 Query 40376 GGCGGGCGCCGCCTTGTCGATGGCCTTGGACACGTCGAGCGACTTCGGAAACCCGCTGCC 40435 |||||| ||| | ||| ||||| || | ||| || Sbjct 726 ---------CGCCTTTCAGATTG---TGG-----------GACTTAGGCATCCCAGACCC 690 Query 40436 GTACAGCCACGCGATGGAGTCGCGGATCTCGAAACCGGCGTCCTCAATGGCAACGGTCAG 40495 ||| | ||| ||||| ||||||||||||||| ||||||||||| ||| |||| || Sbjct 689 GTAAACCCAGGCGATCATGTCGCGGATCTCGAACCCGGCGTCCTCGATGCGGACGGCCAT 630 Query 40496 GCGGTGCCAGGTGCGCGAACCTCCGAAGGCGAACAGGTGCCCGCCCGGTTTGAGGACTCG 40555 ||||||| |||||| | || | || || | |||||| ||||| || ||||| || || Sbjct 629 GCGGTGCTGGGTGCGGGTGCCGGCAAACGCCAGCAGGTGGCCGCCAGGCTTGAGCACGCG 570 Query 40556 CAGGCACTC 40564 ||||||||| Sbjct 569 CAGGCACTC 561 >seq27079 Length=4003 Score = 80.6 bits (88), Expect = 9e-11 Identities = 104/144 (72%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 40224 ACGCGGCAGGCGTCGATGTTGAGTGCCCCGGTGCCGTGCGCCAGCACGTTCGCCGCCACG 40283 || ||||| |||| || || | | || |||||||| ||||| ||||| || || Sbjct 1281 ACACGGCATCCGTCTATATTTAACCCGCCTGTGCCGTGTGCCAGTACGTTACTTGCGACA 1222 Query 40284 GTGCCCGCCAGCGGTTTTCGCGCGACCACGATGGGCTCAAAGGCGGGTTTCAGCGCGGTG 40343 || |||||||||||||| || || || ||| ||||| |||||||| | || ||| Sbjct 1221 GTACCCGCCAGCGGTTTACGGGCAACGCAGATAGGCTCGTGCGCGGGTTTTAAGGCAGTG 1162 Query 40344 CCCCAGCCCTGCCACTGCTTGACG 40367 |||||||| | ||| || ||| || Sbjct 1161 CCCCAGCCTTCCCATTGTTTGGCG 1138 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 164171182213800