Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20arachidis_20[genbank_20GCA_5F001013415.1_202015-05-26] 130,300 sequences; 87,617,276 total letters Query= NC_023719.1 Length=497513 Score E Sequences producing significant alignments: (Bits) Value seq66805 154 5e-32 seq84545 145 2e-29 seq34103 136 1e-26 seq78424 122 3e-22 seq39598 102 3e-16 seq66850 87.8 6e-12 >seq66805 Length=904 Score = 154 bits (170), Expect = 5e-32 Identities = 542/831 (65%), Gaps = 23/831 (3%) Strand=Plus/Minus Query 54156 CAACCAGCTACTCCAACTTTCCTAAATGCTGGTAGAAGCAGACGCGGAGAAATGGTTTCT 54215 |||||||| || ||||| ||||| ||||| |||| ||| | || || || ||||| || Sbjct 871 CAACCAGCAACACCAACCTTCCTGAATGCAGGTA-AAGTCGTCGTGGTGAGATGGTATCC 813 Query 54216 TGTTTCTTATTAGAAATGGATGATAGCTTGAATTCAATTGGTTTCAATATCAATAC-TGC 54274 |||||| | |||||| ||| | | || || || | | | || || ||| Sbjct 812 TGTTTCCATGCTGGAATGGACGATTCCCTTAACTCGATCAACTACGTGCTGAACACCTGC 753 Query 54275 AATGCAATTATCTAAAATTGGCGGCGGCGTTGCCTTAAACCTTTCTAAACTTAGAGGAAG 54334 | |||| | || |||||||||||||| || || | ||||| || || ||| | ||| | Sbjct 752 A-TGCAGCTGTCCAAAATTGGCGGCGGTGTAGCGGTGAACCTGTCCAAGCTTCGCGGACG 694 Query 54335 AAAAGAGCAAATTAAAGGTATTGATGATGCTGCTTCTGGAGTAGTACCAGTTATGAAACT 54394 |||| ||| |||||| | || | || || || | | || || |||| || Sbjct 693 CGGCGAGCCAATCAAAGGTGTAGAAGGCGCAGCGAAAGGCATTATGCCTGTACTGAAGCT 634 Query 54395 TTTAGAAGATAGCTTCTCTTATGCTAATCAGCTTGGCCAAAGAAAAGGCGCTGGAGCTGT 54454 | || ||| ||||| |||||| | ||| | || ||| | |||||| |||| || | Sbjct 633 GATGGAGGATGCATTCTCCTATGCTGACCAGATGGGTCAACGTAAAGGCTCTGGCGCGGC 574 Query 54455 TTACT-TAAACATCTTCCACTGGGATATTATTGAATTCTTAGATACTAAAAAGATCAATG 54513 |||| |||||||||| |||||| ||| | || ||| | |||| || |||||||||| Sbjct 573 ATACTACAAACATCTTCGGCTGGGACATTCTGGAGTTCCTGGATAGCAAGAAGATCAATG 514 Query 54514 CTGATGA----AAAAGCCAGAATTCAATCTTTATCTATTGGATTAAT---TGCTGAAAAA 54566 | ||||| | | | | || || || | || || || | || ||| | || Sbjct 513 CAGATGAGCGTACACGTCTAAA---AAACTCTGTCGATCGGTCTGATCCGTGCCG--AAT 459 Query 54567 ATCTTCTTCCAATTAGCA-AAAAGAAACGAAGAAATGTATGTTTTTGCTCCTCACTCGGT 54625 ||||| | | | ||| | | |||||| || |||| |||||||| | || Sbjct 458 CGCTTCTACAAGCTGGCAGCAGATAAACGAGATGCTGCATGTATTTGCTCCATATAGCGT 399 Query 54626 TTACAGAGCTTATGGTGAACATTTAGATGACATGGATTTAAATGTTATGTATGATAAGTT 54685 | || || ||||| | ||| | || || ||| || | ||| ||||| |||| | Sbjct 398 ATTCAAGGCGTATGGCAAGCATCTGGACGATATGAATATCGATGAGATGTACGATACACT 339 Query 54686 AGTTAAAAACCCAGCTGTTAAGAAACGTAAGTTAAATTTAACTGCTCGCGAAATGCTTAT 54745 || | || || |||||| ||| | | | | || ||| | ||||| | Sbjct 338 GCTTCTGATGAGCGC-GTGAAGAAA--AAAGCGATCATGAGC-GCACGC-ATATGCTAAC 284 Query 54746 TAAAATTGCTATTATTCAATTAGAATCTGGCTACCCTTATTTTATGTACAAAACTAACGC 54805 || ||||| | ||||| | ||||| ||||| || ||| ||||| |||| | || || Sbjct 283 GAAGATTGCAAGCATTCAGCTGGAATCCGGCTATCC-TATATTATGAACAAGAGCAATGC 225 Query 54806 TAATGATACTCACGCATTAAAAGATATTGGCCAAGTTAAAATGAGTAATCTTTGTACGGA 54865 || | || || | || ||| ||| ||||||||| ||||| ||||| || Sbjct 224 GAACAAGTTCCATGCTCTGAACAGTATCGGCTCTGTTAAAATGTCGAATCTGTGTACAGA 165 Query 54866 AATCTTCCAATTACAAGAGACATCTACTATTAATAACTATGGTACTGATGATGAAATCAA 54925 ||||||||| ||||| |||||| | |||| | |||||||| || || ||| Sbjct 164 AATCTTCCAGTTACAGGAGACAACAGAGATTACGGATTATGGTACGGAAGACATCATCCG 105 Query 54926 GAGAGATATCAACTGTAATTTAGGTTCATTAAATATTGTTAATGTAATGGA 54976 | ||||| | |||||| | ||||| |||| || ||||| || ||||| Sbjct 104 TCGCGATATTAGCTGTAACCTTGGTTCCCTAAACATCGTTAACGTGATGGA 54 >seq84545 Length=668 Score = 145 bits (160), Expect = 2e-29 Identities = 194/267 (73%), Gaps = 2/267 (1%) Strand=Plus/Plus Query 55404 GATGTTAAGAAATATGGTTTATACCATGCTTACCGTCTGGCAACAGCACCAACACAAAGT 55463 || || | ||| ||||| | |||||||| || |||||||||| || ||||| ||| Sbjct 301 GACGTGATGAAGCATGGTCTGTACCATGCATATCGTCTGGCAATCGCGCCAACCGCAAGC 360 Query 55464 ATTTCTTATATTCAAAATGCAACGCCAAGTGTTATGCCAATTGTAGATCATATTGAAGCT 55523 ||||| ||||| ||||||||||| | || ||||||||||| || || || || || | Sbjct 361 ATTTCGTATATCCAAAATGCAACATCCAGCGTTATGCCAATCGTGGAGCAAATCGAGACA 420 Query 55524 AGAACATATGCTAACTCTACAACATACTATCCAATGCCTTATTTGTCATTA-GATACTTT 55582 | || ||||| ||||| ||||| ||||||||||||||||| || || | |||| || Sbjct 421 CGCACGTATGCGAACTCGACAACGTACTATCCAATGCCTTACATG-CAGCAGGATAACTT 479 Query 55583 CTGGTATTATAAATCAGCATATAATACAAATCAATTTAAATTAATTGACATTATTGCTGA 55642 || || || ||||| ||||| | | |||| || || | | || | |||||||| Sbjct 480 CTTCTACTACAAATCGGCATACCAGATGGATCAGTTCAAGGTGCTCGATCTGATTGCTGA 539 Query 55643 AATGCAAGAACATGTAGACCAAGGTAT 55669 ||| || | || || || ||||| || Sbjct 540 AATTCAGCAGCACGTGGATCAAGGCAT 566 >seq34103 Length=2528 Score = 136 bits (150), Expect = 1e-26 Identities = 273/405 (67%), Gaps = 0/405 (0%) Strand=Plus/Minus Query 188794 GGTAAAACATTATTTGCTCAAACATTGGCTGATATGTTACATGTACCTCTAGCTATCTCT 188853 |||||||| || | ||| |||| |||| | | | |||| ||| | | || | Sbjct 1153 GGTAAAACGTTGCTGGCTGAAACCCTGGCCCGTTTACTGGATGTGCCTTTTACCATGGCG 1094 Query 188854 GATGCAACTTCTTTAACAGAAGCTGGTTATGTAGGTGAAGATGTGGAAAACGTATTGCTT 188913 |||||||| | | || ||||| |||||||| || ||||| || ||||| | | | Sbjct 1093 GATGCAACCACGCTGACCGAAGCCGGTTATGTGGGGGAAGACGTCGAAAATATCATCCAG 1034 Query 188914 CGTTTAATCCAAGCAGCTGATTACGATATCGAATTAGCGGAACGTGGAATTGTATATATC 188973 | | ||| | ||| |||||| | | ||| ||||||| || || |||||| Sbjct 1033 AAGCTGCTGCAAAAATGTGACTACGATGTGCAGAAAGCCCAACGTGGTATCGTCTATATC 974 Query 188974 GATGAAGTAGATAAAATTGCTAGAAAATCAGAAAGCACATCCATTACCCGAGATGTATCT 189033 |||||| | ||||||||| | | |||||||| | | |||| || ||||| || ||||| Sbjct 973 GATGAAATCGATAAAATTTCACGTAAATCAGACAACCCATCGATCACCCGTGACGTATCG 914 Query 189034 GGCGAAGGAGTACAGCAAGCTTTATTAAAAATCATTGAAGGTACAGTTGCGAAAGTTCCT 189093 || || || || ||||| || ||| | || | |||||||| || || || || || Sbjct 913 GGTGAGGGTGTGCAGCAGGCGTTACTGAAGTTGATTGAAGGCACCGTCGCCGCTGTGCCG 854 Query 189094 CCTCAAGGTGGTCGTAAACACCCTCACCAAGAAATGCTTGAAATAGATACAACTAATATC 189153 || || ||||| ||||| || || || || || | | | | ||||| |||| || Sbjct 853 CCGCAGGGTGGCCGTAAGCATCCGCAGCAGGAGTTTTTGCAGGTCGATACCTCTAAGATT 794 Query 189154 TTGTTTATTCTTGGTGGAGCGTTTGATGGTCTTGAAAACATTATC 189198 ||||||| |||||| || || | ||||| || || ||||| Sbjct 793 CTGTTTATCTGTGGTGGCGCCTTCGCCGGTCTGGATAAGGTTATC 749 >seq78424 Length=989 Score = 122 bits (134), Expect = 3e-22 Identities = 314/473 (66%), Gaps = 4/473 (1%) Strand=Plus/Plus Query 56337 AAAGAACTCTATATGGCGATGGTTGCTTCTGTATTCCTTGAAAGTTATCTTTTCTATAGT 56396 ||||| || | |||||||| ||||| ||||| || ||||| ||||| ||||| ||| Sbjct 79 AAAGAGCTGTTCTTGGCGATGTCGGCTTCCGTATTGCTGGAAAGCTATCTGTTCTACAGT 138 Query 56397 GGTTTCTTCTATCCATTATACTTAGCTGGCCAAGGGAAAATGACA-GCTTCTGGTGAAAT 56455 || ||||||||||| | || | || || || || ||||||||| || | || || || Sbjct 139 GGCTTCTTCTATCCGCTCTATCTGGCAGGTCAGGGTAAAATGACATGCAGC-GGCGAGAT 197 Query 56456 TATTAACTTGATTATTCGTGATGAATCTATCCATGGAGTATTTGTTGGTATGCTTGCACA 56515 || |||||||| | ||||||||| |||||| || |||| || ||| | || ||||| Sbjct 198 CATCGACTTGATTCTGCGTGATGAAAGTATCCACGGCGTATACGTAGGTGTACTGGCACA 257 Query 56516 AGAGGTTTATTCTCAAATGTCAGAGCAAGAACAAAAAGAAGTAGATAAAGAAACT-TATG 56574 || | || | | || ||||| || ||||| || | || ||| ||| | | Sbjct 258 GGAAATCTACAATGATCTGGACGAGCACGAGCAAAAGGATGCGTAT-GAGACACTGGAAG 316 Query 56575 ATTTGTTGATTGATTTATATGAAAATGAATTGGTTTATACAGAAGAGATTTATTCTGAAA 56634 |||| | || | |||| || ||| | || || | |||| | || | || Sbjct 317 GCCTGTTCCGTTATCTGCATGAGAACGAAGAAGGCTACACCGCAGAGGTGTACGATCCAA 376 Query 56635 TTGGTTTAGTTGATGAAGTTAGGAAATTTGTTCGTTATAATGCCAATAAAGCTCTTATGA 56694 | ||| | || ||||| | | || | ||||| ||||| || || || |||||| Sbjct 377 TCGGTCTGACCGAGGAAGTGAATATCTTCCTGCGTTACAATGCGAACAAGGCATTTATGA 436 Query 56695 ATTTAGCTTTAGAACCCTACTTTGAAGAGGAAGAAATTAACCCAATCGTATTTAATGGTT 56754 || | | || || || | || || ||||| | ||||| |||||||| || || Sbjct 437 ATCTGGGCTTTGATCCATTGTTCCCGGATGAAGAGGTAAACCCGATCGTATTCAACGGCA 496 Query 56755 TGAAAACAAATACTAAAAATCATGATTTCTTCTCAGTTAAAGGTAATGGGTAT 56807 | | ||| | || || | ||||| || ||||| || |||||||| ||| Sbjct 497 TCAGTACACACACGAAGCAGCATGACTTTTTCTCCAAAAAGGGTAATGGTTAT 549 >seq39598 Length=301 Score = 102 bits (112), Expect = 3e-16 Identities = 74/86 (86%), Gaps = 0/86 (0%) Strand=Plus/Plus Query 58654 TTTATAATGGCTCCGTGGTGTAGCGGTTAACACGCCTGCCTGTCACGTAGGAGATCGCCG 58713 ||||| ||| ||||||||||| |||||||| |||||||||||||| |||||||||| | Sbjct 70 TTTATCCTGGAACCGTGGTGTAGGGGTTAACATGCCTGCCTGTCACGCAGGAGATCGCGG 129 Query 58714 GTTCGAATCCGGTCGGGGCCGCCATT 58739 |||| ||||| ||||| |||||||| Sbjct 130 GTTCAAATCCCGTCGGTTCCGCCATT 155 >seq66850 Length=701 Score = 87.8 bits (96), Expect = 6e-12 Identities = 77/96 (80%), Gaps = 0/96 (0%) Strand=Plus/Plus Query 140472 GCTTGGTGTGAAAAAGATATGTTTTTTGCACTACCATATGATTATCAAATTAAAAGCGTA 140531 || ||||| ||||| |||||||| ||| || ||| | || ||||||||| |||| Sbjct 371 GCATGGTGCGAAAAGGATATGTTCTTTAACCTGCCACACGAATATCAAATTCGGTGCGTT 430 Query 140532 CAAGAAGAAGCTTATGTGATTGCATTAGAACGGTAT 140567 ||||||||||| |||||||||||| ||||||| ||| Sbjct 431 CAAGAAGAAGCCTATGTGATTGCACTAGAACGCTAT 466 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1589252755334400