Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20arachidis_20[genbank_20GCA_5F001013415.1_202015-05-26] 130,300 sequences; 87,617,276 total letters Query= NC_023734.1 Length=35725 Score E Sequences producing significant alignments: (Bits) Value seq36111 118 2e-22 seq20698 113 1e-20 seq38026 104 5e-18 >seq36111 Length=5564 Score = 118 bits (130), Expect = 2e-22 Identities = 152/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 15858 ATTAACTCTCCTGGTGGTGATGTATTCGAAGGTTTGGCAATCTACAACATGCTGCGCGAA 15917 |||||||| || ||||| || | || |||||| |||| ||||||||||| || |||||| Sbjct 3742 ATTAACTCGCCCGGTGGCGACATGTTTGAAGGTCTGGCGATCTACAACATTCTTCGCGAA 3683 Query 15918 TATTCTGGCCATGTGACGGTCAGAGTGCTTGGTATGGCTGCGAGCGCCGCATCATTTATT 15977 || || | |||||||| | ||| || || | || || ||||||||| ||||| Sbjct 3682 TACCAGGGAAAAGTGACGGTTAAAGTTCTCGGCCTTGCAGCATCAGCCGCATCAATTATT 3623 Query 15978 GCGATGGCTGCTGATGAAGTGAAGATTGCGCGCGCAGGCTTCTTTATGATTCACAATGCT 16037 || ||||| | |||||| ||| |||| | ||| | | || || ||||| ||||| || Sbjct 3622 GCCATGGCGGGTGATGAGGTGCAGATAGGGCGAGGTGCTTTTTTGATGATCCACAACGCG 3563 Query 16038 TGGACCGGCGTTGGCGGTAACCGTAATGAT 16067 |||| | | | || ||||| |||||| Sbjct 3562 TGGATTGTGGCCGCTGGCAACCGCAATGAT 3533 Score = 111 bits (122), Expect = 4e-20 Identities = 316/474 (67%), Gaps = 15/474 (3%) Strand=Plus/Minus Query 15119 AACGCTGGCAAGACGATGGTACTTGAGCATGGCATGAAGTATAACGGCGTGACCATGAAC 15178 || || || |||| ||||| |||||| || |||| ||| | ||||| ||||||||| Sbjct 4566 AATGCCGGGAAGATCATGGTGCTTGAGGGCGGACTGAAATATCAGGGCGTTACCATGAAC 4507 Query 15179 CCAGAAGCGGCGCAAATGCTTGAGACGCGATCCTTTGAGATTGAGGAAATCTGTCGTTGG 15238 || |||| || || |||||||| | ||||||||| || | |||||||| | ||| Sbjct 4506 CCTGAAGATGCTCAGATGCTTGAAAGCCGATCCTTTAGTATCGCTGAAATCTGCAGGTGG 4447 Query 15239 TTTCGCGTATCGCCAATTATGATTGGGCACTTCGATAAGCAAAGCTCATGGGCCGCCTCT 15298 || | || |||| ||||| | || ||| ||| || |||||| |||||| | Sbjct 4446 TTCAGAGTGCCGCCTTTTATGGTGGGACACACCGAAAAACAAAGCAGTTGGGCCTC--AA 4389 Query 15299 GCT-GAAGCGCAAGACT-TACACTTTTTGAAATACACATTTAGACCGCTGCTAGTCAATA 15356 ||| |||| ||| || | | || ||| ||| | || | | || ||||| || || | Sbjct 4388 GCTCGAAG-GCATGAATCTCCAGTTTCTGACTCATACGCTGCGCCCTCTGCTGGTGAACA 4330 Query 15357 TTGAGCAAGAGATTTTACGCTGTCTTATCGGAAAAATTGATAGCGACAAGTATTACGTTG 15416 ||||||| || || | | | || ||| ||| | | ||| || |||| || | || Sbjct 4329 TTGAGCAGGAAATATCAAGATGCCTTCTCG---ATAATGA-AG-ATGAAGT-TTTTGCTG 4276 Query 15417 AGTTCAATGTCGAAGGCTTACTACGTGCAGACAGTAAAACGCGCTCTGAGTACTATTCGT 15476 |||| ||||||||| | || ||||| ||||| | ||| | | ||||| | Sbjct 4275 AGTTTTCTGTCGAAGGGCTTCTGCGTGCCGACAGCGCAGGGCGAGCAGCCTACTACACCA 4216 Query 15477 CTGGCCTGAATAACGGCTGGATAAATCGTGACGAAGTCCGGTCTAA--AGAGAATATGCC 15534 || || | ||||||||||| || | || || || | || || ||| | || Sbjct 4215 GTGCACTTCAGAACGGCTGGATGTCACGCAATGATGTTCG--CAAACTGGAAAATCTTCC 4158 Query 15535 GCCAATTGACGGCGGTGATAAGTACACAATTCAATCAGCACTTATCCCGCTTGA 15588 ||||||||| || ||||| | ||||| |||| | | || | |||||||| Sbjct 4157 GCCAATTGAGGGGGGTGAGATTTACACCGTTCAGTTAAACCTGACACCGCTTGA 4104 Score = 105 bits (116), Expect = 2e-18 Identities = 106/135 (79%), Gaps = 2/135 (1%) Strand=Plus/Minus Query 17595 GCGCAAATTTTTGACCGTGAAGATGCCAACGTCGTCGTTTCTACTGAGAACGCCGACGAT 17654 ||||| ||||||||||| |||||||| ||||| || ||||| | || ||| || || Sbjct 2081 GCGCAGATTTTTGACCGCGAAGATGCAAACGTTGTGGTTTCCAGCGAAAACCAGGATGAC 2022 Query 17655 TTTGAGAAAAACATGGTATCAATCCG-TGCTGAAGAGCGCTTGGCACTGGCTGTCTATCG 17713 |||||||| |||||| | |||||||| ||| |||||||| | || ||||| || ||||| Sbjct 2021 TTTGAGAAGAACATGATCTCAATCCGCTGC-GAAGAGCGTCTTGCTCTGGCGGTTTATCG 1963 Query 17714 TCCGCAGGCATTTGT 17728 ||| | || ||||| Sbjct 1962 TCCTGAAGCGTTTGT 1948 >seq20698 Length=617 Score = 113 bits (124), Expect = 1e-20 Identities = 206/295 (70%), Gaps = 5/295 (2%) Strand=Plus/Plus Query 12832 TGCTGCCACATACCAAAGGTGAGTGGGCATTAAAGCGCTTAAAAATTCAGCTTGAA-CCT 12890 ||||||| || ||||| || || ||||| || ||||| | | ||| | || | || Sbjct 127 TGCTGCCCCACACCAAGGGCGAATGGGCGTTCAAGCG-TCAGCTGATCACCCTGGAGCCC 185 Query 12891 TGGCAAAAATTTGGTATTGCGGTCACGTTCGGTTGGATGCGTAAAAAAGAT-GGCTTCCG 12949 ||||| || || || || ||||| ||||| ||| | | || |||| |||||||| Sbjct 186 TGGCAGGCCTTCGGCATGGCCGTCACCTTCGGGTGGGT-CAAGAAGAAGACCGGCTTCCG 244 Query 12950 CCGCTTTCGTGAGTCCTATTGGGAAGTGCCGCGTAAAAATGGCAAGTCAGCAATTGCTGC 13009 |||||| || ||| ||| ||||| |||||||| || || |||||| | | || || Sbjct 245 CCGCTTCCGCGAGAGCTA-TGGGAGGTGCCGCGCAAGAACGGCAAGAGCGTCGTCGCCGC 303 Query 13010 CGGCGTCGCTCTTAATATGTTTGCCAATGATGGTGAGTTTGGTAGCGAAGTTTATTCAGG 13069 |||||||| | | ||||| | | ||| || ||||| || |||| || || || Sbjct 304 CGGCGTCGGCATCAGCATGTTCGTCGCTGACGGCGAGTTCGGCGGCGAGGTCTACAGCGG 363 Query 13070 CGCTACAACAGAGAAGCAAGCGTGGGAGGTTTTTAAGCCGGCACGTTTGATGGTG 13124 ||| || || |||||||| || |||||||| || ||||| | |||||||| Sbjct 364 CGCCACCACCGAGAAGCAGGCCTGGGAGGTGTTCCGCCCGGCCAGGCTGATGGTG 418 >seq38026 Length=5128 Score = 104 bits (114), Expect = 5e-18 Identities = 131/177 (74%), Gaps = 6/177 (3%) Strand=Plus/Plus Query 17562 GGTAACTTCTTAACCGGTTCATTTGCAGATGC---CGCGCAAATTTTTGACCGTGAAGAT 17618 ||||| ||| | |||||| | || || |||| ||| || ||||| || || |||||| Sbjct 4722 GGTAAATTCCTGACCGGTGCCTT--CA-ATGCAGGCGCCCAGATTTTCGATCGCGAAGAT 4778 Query 17619 GCCAACGTCGTCGTTTCTACTGAGAACGCCGACGATTTTGAGAAAAACATGGTATCAATC 17678 |||||||| || | || || || |||| ||| || ||||||||||||||| | ||||| Sbjct 4779 GCCAACGTTGTTATCTCAACGGAAAACGGCGATGACTTTGAGAAAAACATGATCTCAATT 4838 Query 17679 CGTGCTGAAGAGCGCTTGGCACTGGCTGTCTATCGTCCGCAGGCATTTGTTAAAGGT 17735 ||| ||||| || |||| ||||| ||| | || || | || |||||| | ||| Sbjct 4839 CGTTGCGAAGAACGTCTGGCGCTGGCCGTCAAACGCCCCGAAGCGTTTGTTTACGGT 4895 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 114021699388200