Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20arachidis_20[genbank_20GCA_5F001013415.1_202015-05-26] 130,300 sequences; 87,617,276 total letters Query= NC_023738.1 Length=106327 Score E Sequences producing significant alignments: (Bits) Value seq73449 161 7e-35 seq36896 95.1 8e-15 seq81331 86.0 4e-12 seq8672 84.2 1e-11 >seq73449 Length=503 Score = 161 bits (178), Expect = 7e-35 Identities = 222/305 (73%), Gaps = 13/305 (4%) Strand=Plus/Plus Query 94473 CGCCCCCACCGGCAGGAATAACCCGTCACCCATTCCCATGAGCTGCTCGGCTCCGCCCTC 94532 |||||||| ||||||||| | ||||||||| || ||||| | || || ||| || Sbjct 129 CGCCCCCATCGGCAGGAAGAGTCCGTCACCCTGACCGATGAGACGATCCGCGCCGGGCTG 188 Query 94533 GTCCAGGATCACCCGGCTATCGGTGAGGGACGCTGTG----GCGAACGACAGCCGCGAGG 94588 || ||||| || ||| ||||||| ||||| ||||||| || ||||||| Sbjct 189 ATCGAGGATGACGCGGGAGTCGGTGA----CGCTGGTCACCGCGAACGCGAGTCGCGAGG 244 Query 94589 GCACGTTG-CTCTTGATGAGGCCCGTC-ACCACATCCACGGAGGGCCGCTGCGTCGCCAG 94646 |||||||| | |||||| ||||||||| || || || |||||||| ||||| ||||| || Sbjct 245 GCACGTTGGCCCTTGATCAGGCCCGTCGACGACGTCGACGGAGGGACGCTGGGTCGCGAG 304 Query 94647 GACGAGATGAATGCCGGCCG-CACGCGCCTTCTGCGCGATGCGGACAATGTTGGCCTCAA 94705 |||||| || ||| | || | | || || ||| | ||||||||| || | |||| | Sbjct 305 GACGAGGTGGATGGCCGCTGGCTCGGGCGAGCTGGGTGATGCGGACGATCGAGTCCTCGA 364 Query 94706 CCTCTTTCTTGTAGCCACCCATCATGAGGTCCGCGAGTTCATCCACCACTACCACGATGT 94765 | || | | || ||||||||||||||| ||||| || || || || |||| | || Sbjct 365 CGTCGCGC--GGCGCGACCCATCATGAGGTCGGCGAGCTCGTCGACGACGACCAGCAGGT 422 Query 94766 AGGGG 94770 ||||| Sbjct 423 AGGGG 427 >seq36896 Length=1551 Score = 95.1 bits (104), Expect = 8e-15 Identities = 127/176 (72%), Gaps = 7/176 (4%) Strand=Plus/Minus Query 94600 TTGATGAGGCCCGTCACCACATCCACGGAGGGCCGCTGCGTCGCCAGGACGAGATGAATG 94659 ||||||||||| || | || || || || || ||||| || ||||| || || || || Sbjct 881 TTGATGAGGCCGGTAATGACGTCAACTGACGGACGCTGGGTTGCCAGAACAAGGTGGATT 822 Query 94660 CCGGCCGCACGCGCCTTCTGCGCGATGCGGACAAT--GTTGGCCTCAACCTCTTTCTTGT 94717 || ||||||||||| ||||| || | || |||| || || || ||||||| Sbjct 821 CCCGCCGCACGCGCTTTCTGTGCAAGACGTGCAATCAGT-----TCTTCCACTTTCTTAC 767 Query 94718 AGCCACCCATCATGAGGTCCGCGAGTTCATCCACCACTACCACGATGTAGGGGAGT 94773 | || ||||||| | || |||| |||||||||| ||||||||||| || ||| Sbjct 766 CGACAGCCATCATCAAATCGGCGAACTCATCCACCATCACCACGATGTAAGGCAGT 711 >seq81331 Length=977 Score = 86.0 bits (94), Expect = 4e-12 Identities = 123/172 (72%), Gaps = 1/172 (1%) Strand=Plus/Plus Query 94936 TTGGGGTCGATCATGATGAGTTTGACCCGATCAGGGGTCGCCCGGTAGAGCAGCGAAACC 94995 ||||||||||||||||| | | | | || || ||| ||||||||||||||| | Sbjct 482 TTGGGGTCGATCATGATCATGCGGCACTGGTCGGGCGTCAGCCGGTAGAGCAGCGACAGG 541 Query 94996 AGCATTGAGTTGATGAAGCTGGACTTGCCCGATCCGGTCGCGCCAGCCACCAGCAGATGC 95055 | ||| |||||| | | ||||||||||| || |||| ||| || || || || ||| Sbjct 542 ATCATGCAGTTGAGGCCGACCGACTTGCCCGACCCCGTCGTGCCCGCGACGAGGAGGTGC 601 Query 95056 GGCATCTTGGCCAGGTTCAGGGAGACGTCCTTACCCTCGACGTCCTTGCCCA 95107 |||||| |||||| || | |||| | ||| ||| || |||||||| Sbjct 602 GGCATCGGCGCCAGG-TCGTGATGACGGGATCGCCCGCGATGTTCTTGCCCA 652 >seq8672 Length=1064 Score = 84.2 bits (92), Expect = 1e-11 Identities = 97/130 (75%), Gaps = 3/130 (2%) Strand=Plus/Minus Query 94635 CTGCGTCGCCAGGACGAGATGAATGCCGGCCGCACGCGCCTTCTGCGCGATGCGGACAAT 94694 ||| || ||||||| || || ||||||||||| ||||||||||||||||| || | || Sbjct 1064 CTGGGTGGCCAGGATCAGGTGGATGCCGGCCGCTCGCGCCTTCTGCGCGATCCGCGCGAT 1005 Query 94695 GTTGGCCTCAACCTCTTTCTTGTAGCCACCCATCATGAGGTCCGCGAGTTCATCCACCAC 94754 | || ||| |||||| | | |||||| | ||| |||| ||| |||||||| Sbjct 1004 CAGCTCTTCGACC---TTCTTGCCGACGATCATCATCATGTCGGCGAATTCGTCCACCAC 948 Query 94755 TACCACGATG 94764 ||||||||| Sbjct 947 CACCACGATG 938 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 339581476270400