Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20arachidis_20[genbank_20GCA_5F001013415.1_202015-05-26] 130,300 sequences; 87,617,276 total letters Query= NC_023744.1 Length=60588 Score E Sequences producing significant alignments: (Bits) Value seq75989 114 5e-21 seq2902 114 5e-21 seq37656 107 7e-19 seq67724 91.5 6e-14 >seq75989 Length=485 Score = 114 bits (126), Expect = 5e-21 Identities = 153/209 (73%), Gaps = 4/209 (2%) Strand=Plus/Minus Query 49391 TGCCGTTCGTCCACCCGCATGTGGCGCTGATGCCCGACGCGCACGCCGGCAAGGGTTCAT 49450 |||||||| || | ||| ||||| |||||||||||| ||| |||||||| || Sbjct 261 TGCCGTTCATCTTCAAGCACCTGGCGGTGATGCCCGACGTGCATCTGGGCAAGGGCTCGA 202 Query 49451 CGGTCGGCACCGTCATCCCGACTATCGACGCCGTGATCCCGGCCGCGGTGGGCGTGGACA 49510 | |||||| ||| ||||| | | | ||| | ||||| || || |||| |||||||| Sbjct 201 CCATCGGCAGCGTGATCCCCTCGGTGGGCGCGATCATCCCTGCTGCCGTGG-CGTGGACA 143 Query 49511 TCGGCTGCGGGATGATCGCCGCCCGCACCATCTACACCGAGGACGACCTGGACGGCCGGG 49570 |||||||||||||||||||||| ||||||| |||| | |||||| | ||| | Sbjct 142 TCGGCTGCGGGATGATCGCCGCGCGCACCACGCTGACCGGCGCCGACCT-GCCGGAC--A 86 Query 49571 ACCTCGCCGCGCTGCGGCACGCCATCGAG 49599 |||| || ||||| |||||||||| Sbjct 85 ACCTGCACGGCCTGCGCTGCGCCATCGAG 57 >seq2902 Length=689 Score = 114 bits (126), Expect = 5e-21 Identities = 326/495 (66%), Gaps = 12/495 (2%) Strand=Plus/Plus Query 49753 CAGCTCGGAAGCCTCGGCGGCGGTAACCATTTCATCGAACTATGCCTGGACGAAACCGGC 49812 ||||| || | ||||||| || ||||| ||| |||| | | | ||||| |||| Sbjct 192 CAGCTGGGCACCCTCGGCTCGGGCAACCACTTCGTCGAGGTGTCCTCCGACGAGCTCGGC 251 Query 49813 CGGGTGTGGCTGTTCCTGCACTCCGGGTCGCGTGGCGTCGGCAACAAGATCGCCCAAAAG 49872 ||||||||||||||||| |||||||| ||||| || || || ||| || | || || | Sbjct 252 CGGGTGTGGCTGTTCCTCCACTCCGGCTCGCGCGGGGTGGGGAACCAGCTGGCGCAGCGG 311 Query 49873 CACATCAAGGTCGCGCAGAAACTCATGGACCGCTGGTGGATTCAGCTCCCAAGCCCCGAC 49932 |||||| ||| |||||| | | || || ||| | || || || |||| Sbjct 312 CACATCCGGGTGGCGCAGGAGCAGGCGGCACGGCGGTTTTACGACCTGCCGGACCGCGAC 371 Query 49933 CTGGCGTACTTGCCGCAAGGCACACCGGAGTTCGCCGACTATCTGCGGGAGCTGCACTGG 49992 || || ||| | | | || |||||||||| || ||| | || || | ||| Sbjct 372 CTCGCCTACCTCGTGGAGGGGGAGCCGGAGTTCGACGCCTACGTCGAGGCCCTCCTGTGG 431 Query 49993 GCGCAGCGGTTCGCGCTAGAGAACCGCGCCGAAATGATGGACCGTTTCGCTATCGTGTTC 50052 |||||||| ||||| ||||||| || ||||||||||| ||| || | || Sbjct 432 GCGCAGCGCTTCGCCGCCCTCAACCGCGAGGAGATGATGGACCGCGTCGTCGCCGCGCTC 491 Query 50053 GGCGAGTGGATCGGGC--ACCCCACCGGCGG--GGCG--CTGGTGGAAACCA-CGGTGAA 50105 | |||| |||| | | |||| || | || | | ||| || | ||| Sbjct 492 GCCGAGGCCCTCGGCCTGGGCGGGCCGGAGGACGTCGTCCGCGAGGAGACGATCGG---- 547 Query 50106 CACGCACCACAACTACACGACGCAGGAACGGCACGGCGGCCGCGACGTGTGGCTGACCCG 50165 | |||||||||||||| | | || ||| ||| || || ||||||||| |||| Sbjct 548 CTGCCACCACAACTACACCGCCCGCGAGACCCACTACGGGCGTGAGGTGTGGCTGTCCCG 607 Query 50166 CAAGGGCGCCATCGACGCGCACGCCGGCGTGATGGGCCTGATCCCGGGCAGCATGGGCAC 50225 ||| ||||||||| ||| | || |||| | | ||||| | ||||| |||||| Sbjct 608 CAA-GGCGCCATCAGCGCCCGCGAGGGCGAGCTCGGCCTCGTGCCGGGGTCGATGGGCGA 666 Query 50226 CCCGTCATACGTGGT 50240 | |||| ||||| || Sbjct 667 CGCGTCCTACGTCGT 681 >seq37656 Length=523 Score = 107 bits (118), Expect = 7e-19 Identities = 169/241 (70%), Gaps = 1/241 (0%) Strand=Plus/Minus Query 49768 GGCGGCGGTAACCATTTCATCGAACTATGCCTGGACGAAACCGGCCGGGTGTGGCTGTTC 49827 ||||| || ||||| |||||||| || ||||| |||||| | ||||||||| || | Sbjct 346 GGCGGTGGCAACCACTTCATCGAGCTGTGCCTCGACGAAGAGGCGCGGGTGTGGGTGATG 287 Query 49828 CTGCACTCCGGGTCGCGTGGCGTCGGCAACAAGATCGCCCAAAAGCACATCAAGGTCGCG 49887 |||||||| |||||||| ||||||||||| ||||| | | | |||| || | || Sbjct 286 CTGCACTC-GGGTCGCGCGGCGTCGGCAATGCGATCGGCAACCACTTCATCCAGCTTGCC 228 Query 49888 CAGAAACTCATGGACCGCTGGTGGATTCAGCTCCCAAGCCCCGACCTGGCGTACTTGCCG 49947 || | ||| |||||| ||| | || || || |||||||| || ||||| Sbjct 227 AAGGAGGAAATGCGGCGCTGGATGATCAACCTGCCGGACCAGGACCTGGCCTATCTGCCG 168 Query 49948 CAAGGCACACCGGAGTTCGCCGACTATCTGCGGGAGCTGCACTGGGCGCAGCGGTTCGCG 50007 |||||| | | | | || |||||| || | | || ||||||||||||| | ||| Sbjct 167 GAAGGCAGCCAGCACTACGGCGACTACGTGTTCGCGGTGGACTGGGCGCAGCGCTATGCG 108 Query 50008 C 50008 | Sbjct 107 C 107 >seq67724 Length=1524 Score = 91.5 bits (100), Expect = 6e-14 Identities = 116/153 (76%), Gaps = 5/153 (3%) Strand=Plus/Plus Query 49390 CTGCCGTTCGTCCACCCGCATG-TGGCGCTGATGCCCGACGCGCACGCCGGCAAGGGTTC 49448 ||||| ||| |||| | || | | ||| ||||||| | || |||| |||||||| | Sbjct 1353 CTGCCCTTCATCCATC-GCTGGATCGCGGTGATGCC-GTCGTGCACCTGGGCAAGGGCGC 1410 Query 49449 ATCGGTCGGCACCGTCATCCCGACTATCGACGCCGTGATCCCGGCCGCGGTGGGCGTGGA 49508 | |||||| | || | ||||| |||| ||| | | || ||||||||||| ||||| Sbjct 1411 GACCGTCGGCTCGGTGGTGCCGACCATCGGCGCGATCGTGCCTGCCGCGGTGGGTGTGGA 1470 Query 49509 CATC-GGCTGCGGGATGATCG-CCGCCCGCACC 49539 |||| |||||||||||||||| |||| |||||| Sbjct 1471 CATCGGGCTGCGGGATGATCGCCCGCGCGCACC 1503 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 193460192730000