Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20arachidis_20[genbank_20GCA_5F001013415.1_202015-05-26] 130,300 sequences; 87,617,276 total letters Query= NC_024121.1 Length=167266 Score E Sequences producing significant alignments: (Bits) Value seq31280 185 9e-42 seq36028 93.3 5e-14 >seq31280 Length=10079 Score = 185 bits (204), Expect = 9e-42 Identities = 291/413 (70%), Gaps = 4/413 (1%) Strand=Plus/Plus Query 139708 ACATCAGATCGTTGATTTGCACACCGTAATCCAAGTGACGAATGCGGTTCTCTTCAACGC 139767 |||||| | ||||| ||||||||||| |||| |||||| | |||||| |||| || | Sbjct 1331 ACATCATTTTGTTGAGCTGCACACCGTAGTCCATGTGACGTACGCGGTTACCTTCCACAC 1390 Query 139768 CTTTGTTGTTTTTCAGAACAAGCAAGTTTTCAACTTCCAAGTGCCAGATTGGATAGTACA 139827 | |||||||||||| || | || | |||| ||||||| ||||| || |||||| ||| Sbjct 1391 CACGGTTGTTTTTCAGGACTAACAGGCTTTCTACTTCCAGATGCCACATCGGATAGAACA 1450 Query 139828 ACGTCGCTGCACCACCACGAACACCACCTTGAGAACAGGATTTAACCGCAGTCTGGAAGT 139887 ||||||||| || ||||| || || || || ||||||||||| ||||| |||||||||| Sbjct 1451 GCGTCGCTGCGCCGCCACGGACGCCGCCCTGCGAACAGGATTTCACCGCTGTCTGGAAGT 1510 Query 139888 GTTTCCAGAAAGGAATTACGCCAGTGTGTTTGACTTCACCGAAACCAATTTTTGAGCCTT 139947 | || |||| || || || || || |||||||| | ||| ||| Sbjct 1511 GCTTGTAGAACGGGATACAACCGGTATGGAAAGCTTCACCGCCGCGAATCGGGCTGCCCA 1570 Query 139948 CAGCTCGGATTCGACCTGCGTTGATGCCGATTCCAGCTCGTTTAGAAATGTACTTGACAA 140007 || ||||| ||||| ||||| || || || || || |||| |||| ||| || |||| Sbjct 1571 GCGCGCGGATACGACCCGCGTTAATACCAATACCTGCGCGTTGTGAAACGTATTTCACAA 1630 Query 140008 TCGATGCTGCTGAGT--CGTTGATACTGTTAAGCGAATCATCAGACTCGATAACAACACA 140065 | | |||| | || ||||||| | || || || | || || | ||||| Sbjct 1631 TAG-CGCTGGAG-GTCGCGTTGATGGAATCCAGGCTGTCGCCACATTCAATCAGGACACA 1688 Query 140066 CGAACTGAATTGACGAATCGGTGTACGGGCTCCTGCCATAATAGGAGTTGGCA 140118 || ||||| ||||| | || ||||| |||| | ||| || || || |||| Sbjct 1689 GGAGCTGAACTGACGGGTTGGCGTACGCACTCCCGACATGATTGGCGTCGGCA 1741 >seq36028 Length=2231 Score = 93.3 bits (102), Expect = 5e-14 Identities = 183/267 (69%), Gaps = 14/267 (5%) Strand=Plus/Minus Query 138056 GTTGCGCATGATGTGGGTGTAAGAACGAGAGTGAATGGTCTCAGAGAATGTCCAAGTCTG 138115 |||||| |||||||||||||| || |||||||| || || || ||||| | ||| || | Sbjct 260 GTTGCGAATGATGTGGGTGTACGAGCGAGAGTGGATCGTTTCGGAGAACGCCCAGGTTTC 201 Query 138116 AATCCATGTTTCAAGTCCAACATCAGAACAGATATCAGCGAATGCGATAGCAGGT----G 138171 ||||| ||||| ||| | | ||| || ||||||| || | || || | Sbjct 200 TATCCAGGTTTCCAGTTC-----CGGAATCGAGATCAGCGGCAGCAGTGCCACGTTCGGG 146 Query 138172 CT-CGTCCTTGAACTGAATCAAGGAGTGTTTGATATTTCAAGTTGTTGGTGA--AAATGC 138228 || ||||| |||| || || || | || || ||||||| |||| || ||| | |||| Sbjct 145 CTGCGTCCCTGAATCGAGTCCAGTAACGTCTGGTATTTCAGGTTGCTGATGAAGATATGC 86 Query 138229 CTTGATCGTTTTCAGACATTTTCTGGAATTGAACACGATCTTTGGATACGTCTACTTCTT 138288 || || | || | || |||| | | | ||||| || || || ||||||| Sbjct 85 TTT--TCATGATCGGGCAGGGCCTGGTAGTCGATGCGATCGCGTGAGACATCGACTTCTT 28 Query 138289 CTGGACGCCAAAAGAAGGAGAGTTGCT 138315 | |||||||| ||||| || || |||| Sbjct 27 CAGGACGCCAGAAGAACGAAAGCTGCT 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 534251618088000