Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20arachidis_20[genbank_20GCA_5F001013415.1_202015-05-26] 130,300 sequences; 87,617,276 total letters Query= NC_024124.2 Length=169148 Score E Sequences producing significant alignments: (Bits) Value seq33108 176 5e-39 seq49372 125 8e-24 seq49234 125 8e-24 seq31280 116 4e-21 seq50823 113 5e-20 seq34305 98.7 1e-15 seq72596 86.0 7e-12 >seq33108 Length=3479 Score = 176 bits (194), Expect = 5e-39 Identities = 147/180 (82%), Gaps = 0/180 (0%) Strand=Plus/Plus Query 108422 GGTGGTCAACACCTGAACGTTAACGTTCTGCGTCGTGAAACTCTGGAAGATGCAGTTAAG 108481 || || || ||| | ||||||||||| ||||| |||||||| |||||||| || || || Sbjct 2789 GGCGGGCAGCACTTAAACGTTAACGTCCTGCGCCGTGAAACGCTGGAAGACGCCGTGAAA 2848 Query 108482 CATCCGGAAAAATATCCTCAGCTGACCATCCGTGTATCCGGTTATGCAGTTCGCTTTAAC 108541 ||||| || || ||||| ||||||||||| ||||| ||||| ||||| || |||||||| Sbjct 2849 CATCCTGAGAAGTATCCGCAGCTGACCATTCGTGTTTCCGGGTATGCCGTGCGCTTTAAT 2908 Query 108542 TCTCTGACTCCAGAACAGCAGCGCGACGTTATCGCTCGTACCTTTACTGAGAGTCTATAA 108601 || ||||| || ||||| ||||| ||||| || || ||||||||||| || ||| ||||| Sbjct 2909 TCGCTGACGCCTGAACAACAGCGTGACGTCATTGCCCGTACCTTTACGGAAAGTTTATAA 2968 >seq49372 Length=1062 Score = 125 bits (138), Expect = 8e-24 Identities = 247/362 (68%), Gaps = 10/362 (3%) Strand=Plus/Minus Query 102069 TATGACCATGATACTATTCACGAAGCCATTGCACTAACAGACCGTCCGGCTTATACGTTT 102128 |||||||||||||||||||||||||| || | || ||| || || |||| | Sbjct 635 TATGACCATGATACTATTCACGAAGCGATAAAAGTACTTGACAAACCTGCATATATGAAC 576 Query 102129 TACATGAAAGACGGTTCTGAAGTCATGACCTCACGCGAGAAGTTCGAATCGTTAC-CAGA 102187 || || || ||| | || || ||||| || |||||| || | |||| Sbjct 575 TATATTGTGGAAGGTGCAGACGTTATGACAAGTAAAGAAAAGTTCT-----TTGCACAGA 521 Query 102188 A--ATG--GTCAAATTGGCCGGCGTATATGAAGAATCATGTGTACTAGCGTTAGAACGTT 102243 ||| || ||||| || |||||||||||| ||||||| || || |||||||||| Sbjct 520 GCGATGAAGTTAAATTATTGGGTGTATATGAAGAAACATGTGTTCTTGCATTAGAACGTT 461 Query 102244 CTCAGATTCCTAATAACTTTGAAATTAACCCTGAAGCCAGTTTCATGATGGCATTAGAAA 102303 | || || |||||||| ||||||||| | ||| ||||| || | || |||| | Sbjct 460 CACAAATCCCTAATAATTTTGAAATTGATCCTCGTCAGAGTTTTATTACTGCTTTAGTTA 401 Query 102304 AAGTCTGCACAATCATCACCTCCGGTTGGTTCCGTGAGTTCGCTTGGGAAAATTATAGCA 102363 |||| || | | || || || || ||||| | || || ||||||| |||| || | Sbjct 400 AAGTGTGTAGTAGTATTACGTCAGGATGGTTTAGAGAATTTTCTTGGGAGAATTTTAATA 341 Query 102364 AAGTAGTAAGTATGTACCAAAGCTTAGGACATGACGATTACGTCAAGCGTTTCAAACAAA 102423 |||||| | |||||| | | || || | || ||||| | || ||||||||| ||| Sbjct 340 CAGTAGTTAATATGTATCGTAAATTTGGCGAAGATGATTATATTAAACGTTTCAAAGAAA 281 Query 102424 AC 102425 || Sbjct 280 AC 279 >seq49234 Length=879 Score = 125 bits (138), Expect = 8e-24 Identities = 134/176 (76%), Gaps = 1/176 (1%) Strand=Plus/Minus Query 105815 ATGACTCGTATCAATTTAACACTTGTTTCTGAACTGGCCGACCAACATCTTATGGCTGAG 105874 ||||| ||||||||| | || || ||| | || |||||||||||||||||||| Sbjct 549 ATGACCCGTATCAATCTCGTACCAGTACAAGAATTAGCTGACCAACATCTTATGGCTGAA 490 Query 105875 TATCGTGAATTACCACGCGTATTTGGTGCAGTCCGTAAACATGTTCAAAACGGTAAACGT 105934 || |||||||| ||||| ||||| ||||| || ||||| || || ||| |||||||| Sbjct 489 TACCGTGAATTGCCACGTGTATTCGGTGCTGTTCGTAAGCACGTACAAGCTGGTAAACGA 430 Query 105935 GTAAAGGATTTTAAAATCTCTCCAACATTTATCTTAGGCACAGGTCACGTAACATT 105990 | || |||||||||||| | | || | || ||||| |||||||| || ||||| Sbjct 429 ATCAATGATTTTAAAATCAGTACTACCTACAT-TTAGGTACAGGTCATGTTACATT 375 >seq31280 Length=10079 Score = 116 bits (128), Expect = 4e-21 Identities = 144/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 27440 GGTGAAGTTCGACATACGGGTGTTATTCCATTCTGGAAACATTTCCAAACTGCAGTAAAA 27499 ||||||| | ||||| ||| ||| || |||| || || ||||| || || || ||| Sbjct 1550 GGTGAAGCTTTCCATACCGGTTGTATCCCGTTCTACAAGCACTTCCAGACAGCGGTGAAA 1491 Query 27500 TCTTGTTCTCAAGGTGGTATTCGTGGTGGTGCTGCTACAGCGTATTATCCGATGTGGCAC 27559 || ||||| || || || | ||||| || || || || || |||||||||||||| Sbjct 1490 TCCTGTTCGCAGGGCGGCGTCCGTGGCGGCGCAGCGACGCTGTTCTATCCGATGTGGCAT 1431 Query 27560 TTAGAAGTAGAGAACCTATTAGTTCTGAAAAATAATAAAGGTGTGGATGAAAACCGTATT 27619 | |||||||| | ||| ||||| |||||||| || |||||||| | ||||| | Sbjct 1430 CTGGAAGTAGAAAGCCTGTTAGTCCTGAAAAACAACCGTGGTGTGGAAGGTAACCGCGTA 1371 Query 27620 CGACATATGGACTACGG 27636 || || ||||||||||| Sbjct 1370 CGTCACATGGACTACGG 1354 >seq50823 Length=3276 Score = 113 bits (124), Expect = 5e-20 Identities = 135/182 (74%), Gaps = 1/182 (1%) Strand=Plus/Minus Query 105815 ATGACTCGTATCAATTTAACACTTGTTTCTGAACTGGCCGACCAACATCTTATGGCTGAG 105874 |||||||| || |||||| | ||| ||| ||||||| |||||||| |||||||| Sbjct 308 ATGACTCGGATAAATTTAGTTCCGGTTCAGGAATTGGCCGATCAACATCTGATGGCTGAA 249 Query 105875 TATCGTGAATTACCACGCGTATTTGGTGCAGTCCGTAAACATGTTCAAAACGGTAAACGT 105934 ||||||||||||||||| |||||||||||||| | ||||| ||| | || ||| | Sbjct 248 TATCGTGAATTACCACGTGTATTTGGTGCAGTAAGGAAACACGTTGATGCTGGGAAA-AT 190 Query 105935 GTAAAGGATTTTAAAATCTCTCCAACATTTATCTTAGGCACAGGTCACGTAACATTCTTT 105994 | || ||||||||||| | || | ||| | || ||||| || || || || ||| Sbjct 189 ATTAATGATTTTAAAATAAGTAAAAGCTATATTCTTGGAACAGGACATGTTACCTTTTTT 130 Query 105995 TA 105996 || Sbjct 129 TA 128 >seq34305 Length=2218 Score = 98.7 bits (108), Expect = 1e-15 Identities = 122/167 (73%), Gaps = 0/167 (0%) Strand=Plus/Minus Query 108422 GGTGGTCAACACCTGAACGTTAACGTTCTGCGTCGTGAAACTCTGGAAGATGCAGTTAAG 108481 || || || || ||||| |||||||| || || |||| || || ||| | | Sbjct 765 GGCGGCCAGCATCTGAATGTTAACGTGATGAACCGGGAAATGTTGATGGACGCAATGGAT 706 Query 108482 CATCCGGAAAAATATCCTCAGCTGACCATCCGTGTATCCGGTTATGCAGTTCGCTTTAAC 108541 | || || |||||||||||| | |||||||| || || || ||||| |||||||||||| Sbjct 705 AACCCTGAGAAATATCCTCAGTTAACCATCCGCGTTTCGGGCTATGCCGTTCGCTTTAAC 646 Query 108542 TCTCTGACTCCAGAACAGCAGCGCGACGTTATCGCTCGTACCTTTAC 108588 || || || ||| ||||||| ||||| || | ||||||||||| Sbjct 645 TCGCTCACCAAAGAGCAGCAGCAGGACGTGATTACCCGTACCTTTAC 599 >seq72596 Length=790 Score = 86.0 bits (94), Expect = 7e-12 Identities = 175/257 (68%), Gaps = 10/257 (4%) Strand=Plus/Plus Query 124914 TTCCCTAAACTTGTTATGTTCATTGAAGAGGGTGTCAATCTTTATAAAGACGACCCGAAC 124973 || |||||| || | | || || |||| ||||| |||||| | || | || || || Sbjct 522 TTTCCTAAAGTTATATTCTTTCTTAAAGATGGTGTAAATCTTAAAGAAAATGATCCTAAT 581 Query 124974 TATGATATTAAGCAGCTTGCTCTAGAGTGTGCAAGCAAAAGAATGTATCCTGATATTATT 125033 |||||| | || | | || | | |||| |||||||| ||||| ||| | || Sbjct 582 TATGATTTAAAAGAACAAGCAATTAAAACTGCATCTAAAAGAATATATCCAGATTTCATA 641 Query 125034 TCAGTTAA---GAACAATAAAGCTATCACTGGTTC---ATCTATTCCTGTTTCTCCAATG 125087 || || | ||| || |||| | || ||| ||| ||||| ||| ||||||| Sbjct 642 TCGGTAGACTTGAATAAAAAAG---TGACGCATTCTGAATCAATTCCAGTTAGTCCAATG 698 Query 125088 GGTTGTCGTAGTTTCTTGAGTGTATGGAAAGATTCGACTGGAAATGAAATTCTTGATGGA 125147 ||||||||| |||||| ||| |||||||||| | ||||||||||| | ||||| Sbjct 699 GGTTGTCGTTCTTTCTT-AGTTCATGGAAAGATGAAAATGGAAATGAAAAATTCGATGGT 757 Query 125148 CGTAATAATCTTGGTGT 125164 | |||| ||||||| Sbjct 758 AGATTTAATATTGGTGT 774 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 540264209104000