Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20arachidis_20[genbank_20GCA_5F001013415.1_202015-05-26] 130,300 sequences; 87,617,276 total letters Query= NC_024139.1 Length=108483 Score E Sequences producing significant alignments: (Bits) Value seq33499 567 5e-157 seq33108 104 2e-17 seq107223 98.7 7e-16 seq34305 95.1 8e-15 >seq33499 Length=26748 Score = 567 bits (628), Expect = 5e-157 Identities = 626/834 (75%), Gaps = 0/834 (0%) Strand=Plus/Minus Query 38255 TTATTTATTACGCATATCCATGATCATTTGACCATCGTAGCCAGTACCTACCACAGTCTG 38314 |||||| ||||| |||||| |||| | ||| |||||| || ||| | || || || Sbjct 24100 TTATTTGTTACGAGCATCCATAATCAACTTACCTTCGTAGTCACCACCAATAACTGTTTG 24041 Query 38315 TGGTACACCACCTTGATATTTCTGAGCACGAATCATTTCGACTTCCAGTTGTTTCCAACG 38374 ||||||||||||||| ||||||| |||||| ||||||| ||||| |||||||||||||| Sbjct 24040 TGGTACACCACCTTGGTATTTCTCAGCACGTTTCATTTCAACTTCGAGTTGTTTCCAACG 23981 Query 38375 AATCATCTCAGGAGTAATGGTACGTTGCAGTGCGGCGTTAGCTTCAGCTTCTTTCTTAGC 38434 ||||||||| ||||| || || |||| | |||||||||||||||||| | ||| Sbjct 23980 AATCATCTCTGGAGTGATTGTTTTCTGCAACACACTGTTAGCTTCAGCTTCTTTTTGAGC 23921 Query 38435 TGCGTACAGTTTAGCATCTGCGTCACGTTCATTAGCGATAGCTTGGTTGTTGCGAGCTTC 38494 || || | |||||||||||| || ||||| || || |||| || || || ||||| Sbjct 23920 AGCATATAATTTAGCATCTGCATCTCGTTCGTTTGCCTGGGCTTCATTATTACGGGCTTC 23861 Query 38495 ACGATCTGCTTCTGCTTGTTTAACTTTTTGCTGTGCTTCCTGTTCAACACGAGCTAATTC 38554 ||||| || ||||| | |||||| |||||||| ||| | | || || | | || Sbjct 23860 TCGATCAGCCTCTGCCTTCTTAACTGCTTGCTGTGTTTCTTTAGCTACTCGGTCCAGATC 23801 Query 38555 AGCTTTAGCAGCATTAACCTGTTCTTCACGAACTTTGGTATTCTGTACCTGTTCCATGAT 38614 ||| | || || ||||||||||||||||||| || ||||| |||||| | |||||| Sbjct 23800 AGCCTGTGCTGCGTTAACCTGTTCTTCACGAATCTTTGTATTTGTTACCTGCTTCATGAT 23741 Query 38615 TACCGGTGGCAAAGTAATATCCTGAAGGAATACCTGCTTAACTGTGTAACCATATGGGCG 38674 ||| ||||| || ||||| || | ||| | | || || || |||||||| || || Sbjct 23740 TACATCAGGCAAGGTGATATCTTGCAAGAAGATTTCTTTTACAGTATAACCATAAGGACG 23681 Query 38675 TGCATACTCTTCAACTTCCTGTTGAATTGCAGTTTGCAATTGAGCCTGAATTTTAGCATC 38734 ||| || |||||| ||| || | || | ||||| || |||||||| | ||| | Sbjct 23680 TGCGTAGGCTTCAATTTCAGCTTTTACTGAATCCTGCAACTGCGCCTGAATCTCAGCGTT 23621 Query 38735 AAACAAATCTTGTGCTTTAGGTACAGACTTACCAAACTCACGAATAGTAGACAGTAATTT 38794 |||||||| |||||||| || || || ||||||||||| || | ||| || | | || Sbjct 23620 GAACAAATCCTGTGCTTTCGGGACTGATTTACCAAACTCTCGGACAGTGGATAAAAGCTT 23561 Query 38795 TTCAGTTACATATTTGTCTAACGCTTGATCCTGAGTACCTGCGTTAATACGGTTAATTGG 38854 || |||||||| || | ||||| || ||||| ||||| ||||| ||||| || || Sbjct 23560 TTGCTCAACATATTTATCCAGAGCTTGCTCTTGAGTGCCTGCATTAATTCGGTTCATAGG 23501 Query 38855 TGCCTTAGAACCATCAAACTGCAACATAACAGTCAGGTCAACAGTGGATTTAAACTTATC 38914 |||||||||||||||||||||||||||||| |||| || || || |||||||||||||| Sbjct 23500 TGCCTTAGAACCATCAAACTGCAACATAACGGTCATATCCACTGTTGATTTAAACTTATC 23441 Query 38915 CTGGCTAGGAACCTGAAGTTTATCTAATTTTACAGCAATATCTTTTGTACTAAAAGTGTC 38974 ||| || || || || | |||||| || ||| |||||||||||||| ||||| || Sbjct 23440 CTGACTCGGTACTTGCAATTTATCATATGTTATTTTGATATCTTTTGTACTGAAAGTCTC 23381 Query 38975 GAAAGATGCAAATGGGTTTACAAGATGGAAACCTGGTAATACTGGGTTAGGATCTACTTT 39034 || |||||||||||| || | |||||| ||||| ||| || ||||||| ||||| Sbjct 23380 AAAGCTTGCAAATGGGTTAACCACATGGAACCCTGGCTTTACAGGATTAGGATTAACTTT 23321 Query 39035 ACCCAGAAATGTTTGGGTTTTAACCGTACCATCAGAAACAATAGTATATGAATT 39088 ||||| ||| ||||| ||||| || |||||||| || || |||| ||||| Sbjct 23320 ACCCATAAAGGTTTGTGTTTTTACTGTACCATCTTGCACGATGATATAGGAATT 23267 >seq33108 Length=3479 Score = 104 bits (114), Expect = 2e-17 Identities = 125/170 (74%), Gaps = 0/170 (0%) Strand=Plus/Minus Query 27354 GTAAATGTACGACTAATAACGTCGTTCTGTTGTTCACGAGTCAGTGCATTAAATCGAACA 27413 ||||| ||||| ||| ||||| |||||||||| | ||||| | |||||| || || Sbjct 2955 GTAAAGGTACGGGCAATGACGTCACGCTGTTGTTCAGGCGTCAGCGAATTAAAGCGCACG 2896 Query 27414 GCGTAGCCAGAGACACGGATGGTCAACTGAGGATATTTTTCAGGATGTTTCTGCGCATCC 27473 || || || || ||||| ||||||| ||| ||||| || |||||||||||| || || Sbjct 2895 GCATACCCGGAAACACGAATGGTCAGCTGCGGATACTTCTCAGGATGTTTCACGGCGTCT 2836 Query 27474 AAAAGCTGATCACGGCTTAACACATTGACATTTAGGTGCTGACCACCTTC 27523 ||| ||||||| | || || || |||| |||||| || ||||| Sbjct 2835 TCCAGCGTTTCACGGCGCAGGACGTTAACGTTTAAGTGCTGCCCGCCTTC 2786 >seq107223 Length=315 Score = 98.7 bits (108), Expect = 7e-16 Identities = 129/176 (73%), Gaps = 2/176 (1%) Strand=Plus/Minus Query 27340 ATTACATCGC-CTGAGTAAATGTACGACTAATAACGTCGTTCTGTTGTTCACGAGTCAGT 27398 |||||||||| ||| | || ||||| | || || || ||||| |||||||||||| Sbjct 254 ATTACATCGCGCTGTGGAAC-GTACGGTTGATCACATCAAGTTGTTGCTCACGAGTCAGT 196 Query 27399 GCATTAAATCGAACAGCGTAGCCAGAGACACGGATGGTCAACTGAGGATATTTTTCAGGA 27458 | |||| |||||| || || || ||||| |||||||| || ||||| ||||| || Sbjct 195 TTAATAAAGTTAACAGCATAACCGGATACACGAATGGTCAATTGTGGATAGTTTTCTGGG 136 Query 27459 TGTTTCTGCGCATCCAAAAGCTGATCACGGCTTAACACATTGACATTTAGGTGCTG 27514 || | | |||||||| ||| || ||||| ||||| || ||||| || || || Sbjct 135 TGCTCCATCGCATCCATAAGTTGTTCACGATCAAACACGTTCACATTCAGATGATG 80 >seq34305 Length=2218 Score = 95.1 bits (104), Expect = 8e-15 Identities = 127/177 (72%), Gaps = 0/177 (0%) Strand=Plus/Plus Query 27350 CTGAGTAAATGTACGACTAATAACGTCGTTCTGTTGTTCACGAGTCAGTGCATTAAATCG 27409 ||| ||||| ||||| |||| ||||| | ||| || || || || | ||||| || Sbjct 595 CTGGGTAAAGGTACGGGTAATCACGTCCTGCTGCTGCTCTTTGGTGAGCGAGTTAAAGCG 654 Query 27410 AACAGCGTAGCCAGAGACACGGATGGTCAACTGAGGATATTTTTCAGGATGTTTCTGCGC 27469 ||| || ||||| || || |||||||| |||||||||||||| ||||| | | | || Sbjct 655 AACGGCATAGCCCGAAACGCGGATGGTTAACTGAGGATATTTCTCAGGGTTATCCATTGC 714 Query 27470 ATCCAAAAGCTGATCACGGCTTAACACATTGACATTTAGGTGCTGACCACCTTCGAT 27526 |||| | | || ||| | | ||| || ||||| || ||||| || ||||| || Sbjct 715 GTCCATCAACATTTCCCGGTTCATCACGTTAACATTCAGATGCTGGCCGCCTTCAAT 771 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 346469720125200