Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20arachidis_20[genbank_20GCA_5F001013415.1_202015-05-26] 130,300 sequences; 87,617,276 total letters Query= NC_024330.1 Length=37380 Score E Sequences producing significant alignments: (Bits) Value seq74251 156 1e-33 seq60360 141 2e-29 seq83134 107 5e-19 seq53231 107 5e-19 seq1029 80.6 6e-11 >seq74251 Length=708 Score = 156 bits (172), Expect = 1e-33 Identities = 324/470 (69%), Gaps = 28/470 (6%) Strand=Plus/Minus Query 2757 CATGAAATCAAGGCGCTGCGCCCGTTCATTCGCCGC--GACTTCACCAAGCTACTCCCGA 2814 || ||| ||||||| |||| || ||| || ||| ||| || || || |||| Sbjct 684 CAGGAACTCAAGGCCCTGCAACCTTTCCGCCGACGCTCGAC--CAAAAACCTGTTCCCCG 627 Query 2815 CCGACGTCTATTCCTGCG-ACGGCCACACGTTCGACGCCGAGGTCCAACACCCGCTGCAC 2873 ||||||| | | ||| ||||||||| ||||||||||||| || |||| ||| Sbjct 626 GGGACGTCT-TCACGGCGGACGGCCACAAGTTCGACGCCGAGATCATCAACCCTCTGACG 568 Query 2874 GGCCGGCCCTTCCGGCCGGAAATCACCACCATCATAGATATCCGTACCCGTCGAATTCCG 2933 |||| ||| | | | |||||||||||||| | || || || ||||| || | | Sbjct 567 GGCCAGCCGTACAGACCGGAAATCACCACGGTTATCGACGTCGCCACCCGGCGCGTAGTG 508 Query 2934 GGATGGTCCACCGGCCTGGCCGAGTCGGCCCTGGTGGTGGTCGATGCCCTGCGCGACGCC 2993 || || |||| ||||||||||||| | | ||| | || | |||||| |||||| Sbjct 507 GGTATTTCGGTCGGCGAGGCCGAGTCGGCCATCGGTGTGCTGGACG-CCTGCGTGACGCC 449 Query 2994 TGCACCAAGGGCG-GCATTCCGGCCATCTTCTACGTGGACAACGGCTCGGGCTACATCAA 3052 | || || |||| || | |||||||||||||| || ||||||| | ||| Sbjct 448 ATC----CGGTCGTGCATGTTCGCTGTGTTCTACGTGGACAATGGTTCGGGCTTCGCCAA 393 Query 3053 CCACATGATGCGCGACGAGGCGGTCGGCCTTATGGGCCGCCTGGGCATCGA-TATGAAGA 3111 ||| ||||||| ||||| ||| |||||||||| ||| |||| | Sbjct 392 TGACACAGTGCGCGA------GGTCG------TGGACCGCCTGGGCGGCGACCATGACGC 345 Query 3112 ACAGCCTGCCCTACAACAGCCAGGCGCG-GGGCGTGATTGAGCGCGTCCACCAGAGCCTG 3170 || |||||||||||||||||||| || || | || | ||||| | |||||||| | | Sbjct 344 ACTCGCTGCCCTACAACAGCCAGGCACGCGGTCCTG-TCGAGCGAG-CCACCAGACCATT 287 Query 3171 TGGATTCGGGCCGCCAAGGAACTGCCCGGCTACATCGGCGCCGACATGGA 3220 ||| | || |||||| | ||| || ||||||||||||| |||||||| Sbjct 286 TGGGTCAATGCGGCCAAGAAGCTGACCAGCTACATCGGCGCAGACATGGA 237 >seq60360 Length=752 Score = 141 bits (156), Expect = 2e-29 Identities = 224/313 (72%), Gaps = 11/313 (4%) Strand=Plus/Plus Query 25055 GCAACCGGCAAGGCTGTTTCGGATACGGTCGCCGAGTTCTCCAAG---CTGGCCGACGAA 25111 || ||||||||||| || ||||| |||||||||||||| |||| ||||||||||| Sbjct 53 GCCACCGGCAAGGCCGTCTCGGAGACGGTCGCCGAGTT---CAAGCGCCTGGCCGACGAG 109 Query 25112 CCGGTCAAAGCCTC-GCAGCAGCTCAACGAGAAATATCACTACCTGACCGCCTCGGTTTA 25170 ||| ||| ||||| || || ||| |||||| | || ||||||| |||||| |||| || Sbjct 110 CCGACCAAGGCCTCGGCCGC-GCTGAACGAGCAGTACAACTACCTCACCGCCGCGGTCTA 168 Query 25171 CGAGCAGATAGCCGCCCTCGATCAGCAAGGCGATTCGCTGGGTGCCGCCCAGCTGGCCAT 25230 ||| ||||| || || || |||| ||| | | | |||||| | |||||| Sbjct 169 CGACCAGATCCGGGCGCTGGAGGAGCAGGGCAACAAGACCGCCGCCGCCAACCTGGCCGA 228 Query 25231 GGATGCCTATAGCCAG-GCAATGGACGAGCGGGCGAGCCAGATCGTCGAGAACCTGGGCA 25289 || ||||| ||| | || || | ||||| || | | ||| |||||||| || | Sbjct 229 GGCGACCTAT-GCCGGCGCCTTGCAGGAGCGCGCCAAGAACATCAAGGAGAACCTCGGAA 287 Query 25290 CCCTGGAAACCGCTTGGAAGACCGTTGCCGGGGTGGCCAAGGGCGCCTGGGACGAAATGC 25349 || | || | || ||||||| ||| || | | |||||||| |||||||||| |||| Sbjct 288 CCATTGAGTCTGCCTGGAAGAGCGTCACCAGCGGCGCCAAGGG-GCCTGGGACGCGATGC 346 Query 25350 TCGGCGTGGGCCG 25362 || | | ||||| Sbjct 347 TCAACATCGGCCG 359 >seq83134 Length=949 Score = 107 bits (118), Expect = 5e-19 Identities = 227/332 (68%), Gaps = 5/332 (2%) Strand=Plus/Minus Query 252 ATAGGCCGGATTAGCACTGATGATCGCCAGGCCGCCATTGATCTGCCGCTGGACGCGCTT 311 |||||||||||| ||||| | | | | ||||||| |||||| ||||| | ||||| Sbjct 738 ATAGGCCGGATTGGCACTCAACACCTGGATTCCGCCATCGATCTGGCGCTGTAGCCGCTT 679 Query 312 GGCGTACAAGTGGTCATCCAGGCGGATGACGTAGACAGCGTCGTCACGAACCTCATTGCA 371 ||| |||| | ||| ||||| || ||||||| || ||| | | | | |||| Sbjct 678 GGCATACAGCAAATGATCAAGGCG-ATTACGTAGAAGGCCTCGGCCTGCAACGTGTTGCG 620 Query 372 ACTGTGGTCAATCATCACCGTATCGCCATCGCTCAACAGTGGCTCCATTGAGTCACCGCC 431 || |||| |||||||| || |||||||| | || || || ||||||| ||| | Sbjct 619 ACGTAGGTCCATCATCACAGTGTCGCCATCTGAAAGCACCGGTTCATTTGAGTCTCCGTC 560 Query 432 GATGCGGACGGCCGACATATTCGCGAT-CTCCAGGCC-TTGCTTCCGCAAGCTGTAGCGA 489 | || || || | | ||| | | |||||| || || | || ||| ||| || || Sbjct 559 AACCCGCACCGCTGCTA-ATTGGGAAGGCTCCAGCCCCTTACGTC-GCAGGCTATACCGC 502 Query 490 GTGAATGCCAACTGAGCGAGTATCTGCGCCCCCTCTGTCCAGGAGCCGTGACCAGCGCTC 549 || || || | ||| | || | || ||||||| |||||| ||||||||| || Sbjct 501 GTAAAGGCGAGCTGGGTAAGCACCTTGCCCCCCTCATTCCAGGCGCCGTGACCTTGACTG 442 Query 550 ACCCGAGCGTCATACAGAGGGATATAGGCGTA 581 | ||||||||||| || ||||| |||| || Sbjct 441 ATACGAGCGTCATAAAGGGGGATGAAGGCATA 410 >seq53231 Length=1021 Score = 107 bits (118), Expect = 5e-19 Identities = 173/242 (71%), Gaps = 10/242 (4%) Strand=Plus/Plus Query 20562 CACTGCTGAGCT-GGTAGTGGACGGGCGTATCGAGTCCGACACCGCCTGGTTCCTGCTGG 20620 |||||| ||||| ||| || || ||| | || |||||||||||||||||||| | Sbjct 1 CACTGCCGAGCTTGGTGGTCGAGTCGCGCCTGACCTCGGACACCGCCTGGTTCCTGCTCG 60 Query 20621 ACACCACCAAGCCGGTAAAACCGTTCATCT-TCCAGCCCAGGAAGCAGCCGGAATTCGTT 20679 |||||| |||||| || || ||||||| || || | | ||| |||| | ||| Sbjct 61 ACACCAGCAAGCCAGTGCGGCCCTTCATCTATCAAGAGCGCAAGGCA-CCGGTCT-CGTC 118 Query 20680 TCCCAGGTCAACCTGGATTCGGATGACGTCTTCAACCTGCGCAAGCTG---AAGTTCGGC 20736 || || ||| || |||| ||||| ||||||| ||||| |||||||| Sbjct 119 CAGCAAATCGACCCCGAGGCGGACGACGTTTTCAACC---GCAAGGAATACAAGTTCGGT 175 Query 20737 GCCGAAGCCCGCGCTGCTGCCGGTTACGGCTTCTGGCAGCTGGCCTATGGCTCCACCGGC 20796 || ||||| || || || | || || |||||||||||| ||||||||||||| ||||| Sbjct 176 GCGGAAGCGCGGGCAGCGGGGGGCTATGGCTTCTGGCAGATGGCCTATGGCTCGACCGGT 235 Query 20797 AC 20798 || Sbjct 236 AC 237 >seq1029 Length=3852 Score = 80.6 bits (88), Expect = 6e-11 Identities = 108/148 (73%), Gaps = 7/148 (5%) Strand=Plus/Minus Query 8490 GACATGTACCAGGGAACGGCTGATGCACTCGATCTGATCTGCGCGGCCGGTGGCTTCGCC 8549 || ||||||||| | || || || || || || | ||||||||| ||||| |||||| Sbjct 3762 GAGATGTACCAGAGGACCGCCGAGGCCCTGGACCGGATCTGCGCCGCCGGCAGCTTCGAA 3703 Query 8550 GAGCCGGCCGAGGCGGTCACCTTGCTCCTACACAACGTTGCCGA---AATTGCAGAGCGT 8606 ||| |||||||| | | ||| |||| | ||| |||||| ||| || ||||| Sbjct 3702 CAGCGGGCCGAGGTGTTGACCCTGCTGATCCACTC---TGCCGATCAAATCGCCCAGCGT 3646 Query 8607 GACGCGTCACGTTTTG-CCGAATTGATC 8633 ||| ||||||||||| ||||| || || Sbjct 3645 GACATGTCACGTTTTGCCCGAAATGGTC 3618 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 119309504821200