Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20arachidis_20[genbank_20GCA_5F001013415.1_202015-05-26] 130,300 sequences; 87,617,276 total letters Query= NC_024366.1 Length=62661 Score E Sequences producing significant alignments: (Bits) Value seq2902 161 4e-35 seq59741 84.2 9e-12 seq37656 82.4 3e-11 >seq2902 Length=689 Score = 161 bits (178), Expect = 4e-35 Identities = 351/513 (68%), Gaps = 28/513 (5%) Strand=Plus/Plus Query 53826 CAACTCGGCACACTCGGCGGCGGCAACCACTTCATCGAACTGTGCGTCGACCAGCACGGC 53885 || || ||||| |||||| |||||||||||| |||| ||| | |||| ||| |||| Sbjct 192 CAGCTGGGCACCCTCGGCTCGGGCAACCACTTCGTCGAGGTGTCCTCCGACGAGCTCGGC 251 Query 53886 CGGCTGTGGCTGTTCCTGCATTCCGGTTCACGCGGTGTCGGCAACAAGATCGCCCAGAAG 53945 ||| ||||||||||||| || ||||| || ||||| || || ||| || | || ||| | Sbjct 252 CGGGTGTGGCTGTTCCTCCACTCCGGCTCGCGCGGGGTGGGGAACCAGCTGGCGCAGCGG 311 Query 53946 CACATCAAGATCGCGCAAGCCGAATGCGCCGAGCATGGTGT-CGAACTGCCCGGCGGCAA 54004 |||||| | | |||| || | | ||| | | | | | ||| ||||| | | || Sbjct 312 CACATCCGGGTGGCGC-AGGAGCAGGCGGCACGGCGGTTTTACGACCTGCCGGACCGC-- 368 Query 54005 CAAGGATCTAGCCTACCTCGTCGAGGGCGAACCGTCGTTCGGCGCGTACCTCGCTGAGCT 54064 || || ||||||||||| ||||| || ||| ||||| ||| ||| ||| | || Sbjct 369 ----GACCTCGCCTACCTCGTGGAGGGGGAGCCGGAGTTCGACGCCTACGTCGAGGCCCT 424 Query 54065 GCGTTGGGCGCAACAGTTCGCGATGTTCAACCGCAACGAGATGATGGACCG-GTACCGGC 54123 | |||||||| | ||||| |||||||| | |||||||||||||| || || Sbjct 425 CCTGTGGGCGCAGCGCTTCGCCGCCCTCAACCGCGAGGAGATGATGGACCGCGTCGTCGC 484 Query 54124 AAGCGTTCGCGCACTGGCTCGACATCGGTGTCGACGAGGCGCCAGTCGTCGAGATCGCCG 54183 ||| |||| | ||| | |||| | | || | || | ||||| || || Sbjct 485 -CGCGCTCGCCGA--GGC----CCTCGGCCTGGGCGGGCCGGAGGACGTCG---TCCGCG 534 Query 54184 GCGA-ACGCGTCAACGCGCACCACAACTACACCACCCAGGAGCACATCAACG---GTGAG 54239 || ||| || | ||||||||||||||| ||| ||| | | ||| |||| Sbjct 535 AGGAGACG-ATCGGCTGCCACCACAACTACACCGCCCGCGAGACCCACTACGGGCGTGA- 592 Query 54240 CTGGTGTGGGTGACCCGCAAGGGCGCCATCAGCGCGCAACTCGGTGAGCGTGGCCTCATC 54299 ||||||| || ||||||| |||||||||||||| | || |||| |||||| | Sbjct 593 --GGTGTGGCTGTCCCGCAA-GGCGCCATCAGCGCCCGCGAGGGCGAGCTCGGCCTCGTG 649 Query 54300 CCCGGCAGCATGGGCACGGCCTCCTACGTCGTC 54332 || || |||||| || |||||||||||| Sbjct 650 CCGGGGTCGATGGGCGACGCGTCCTACGTCGTC 682 >seq59741 Length=555 Score = 84.2 bits (92), Expect = 9e-12 Identities = 62/72 (86%), Gaps = 4/72 (6%) Strand=Plus/Plus Query 828 GTAGCTCAATTGGTAGAGCAGCGGTCTCCAAAACCGCCGGTTGCAGGTTCGAG----TCC 883 |||||||||||||||||||| ||||||||||||||| |||||| |||||||| ||| Sbjct 183 GTAGCTCAATTGGTAGAGCACCGGTCTCCAAAACCGGCGGTTGTGGGTTCGAGTCCCTCC 242 Query 884 TGCTCTGCGGGC 895 ||| ||||| || Sbjct 243 TGCCCTGCGAGC 254 >seq37656 Length=523 Score = 82.4 bits (90), Expect = 3e-11 Identities = 86/112 (77%), Gaps = 1/112 (1%) Strand=Plus/Minus Query 53826 CAACTCGGCACACTCGGCGGCGGCAACCACTTCATCGAACTGTGCGTCGACCAGCACGGC 53885 || || ||||| | ||||| ||||||||||||||||| |||||| ||||| | | | Sbjct 361 CAGCTGGGCACGTTGGGCGGTGGCAACCACTTCATCGAGCTGTGCCTCGACGAAGAGGCG 302 Query 53886 CGGCTGTGGCTGTTCCTGCATTCCGGTTCACGCGGTGTCGGCAACAAGATCG 53937 ||| ||||| || | ||||| | ||| || ||||| |||||||| ||||| Sbjct 301 CGGGTGTGGGTGATGCTGCACT-CGGGTCGCGCGGCGTCGGCAATGCGATCG 251 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 200072173782600