Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20arachidis_20[genbank_20GCA_5F001013415.1_202015-05-26] 130,300 sequences; 87,617,276 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq51865 176 4e-39 seq8712 145 7e-30 seq117378 122 8e-23 seq29103 100 3e-16 seq28556 100 3e-16 >seq51865 Length=821 Score = 176 bits (194), Expect = 4e-39 Identities = 329/473 (70%), Gaps = 18/473 (4%) Strand=Plus/Minus Query 120399 CGAAATGTTGTTCATAAACTCGAACGGGTTGCTCGCGTTAAAGTATTTCGGCTGGCCCAA 120458 ||| ||||| | |||||| || || |||||| | |||| |||| ||| | ||| | Sbjct 816 CGAGATGTTCTCCATAAAGTCAAAAGGGTTGGTGGCGTGGTAGTACCTCGTGTTGCCGAG 757 Query 120459 CTGTACGAGCAGTCGGTCCGCTACAAACTCAATGTACTCGCACATG-GACTGCGCGTTCA 120517 | ||||| ||||| || |||||||||||||||| ||||||| | || ||||||| Sbjct 756 GGAGAGCAGCAGCCGGTCGGCGACAAACTCAATGTACTGGCACATGAGGGTG-GCGTTCA 698 Query 120518 TGCCCAGCAACGCCACCGGCAACGCCGACGTGAAA--AACTCCTTCTCAATGTCCACCGC 120575 |||| |||| ||| |||| || | || || | ||||||||||| || || || || Sbjct 697 TGCCGAGCAGCGCACAAGGCAGGGC-GTCG-GACAGGAACTCCTTCTCGATCTCGACGGC 640 Query 120576 CTCCTTGAACATGGCGAGCATAGTGT----GGCCGGGCATCTTGTGTTCGATGCGCGTTC 120631 ||| ||| ||||| ||| | || || |||| | ||| || | ||| Sbjct 639 CTCGGTGATGATGGCTTGCACGGCGTCTTTGGAGGGGCGGTT---GTT-GAGGAGCGA-- 586 Query 120632 GGTAGTACAGGCACGCAAAGTCCGTGTGCAGGCCCTCGTCGCGCGATATCAGCTCGTTGC 120691 | || |||||| |||||||| ||||||| ||| ||||| ||||| || ||||||||| Sbjct 585 -GAAGAGCAGGCAGGCAAAGTCGGTGTGCATGCCTTCGTCACGCGAGATGAGCTCGTTGG 527 Query 120692 TAAACGTCAGGCCGGGCATGATGCCTTTCGTCTTGATGTAGAATATGGCGGCAAAGCTGC 120751 ||| || ||||||||||||| ||| | |||||| |||| |||| ||| || || Sbjct 526 AAAAGGTGAGGCCGGGCATGAGGCCACGCTTCTTGAGCCAGAAGATGGAGGCGAAAGAGC 467 Query 120752 CCGAAAAGAACACGCCCTCCACGATGGCAAAGGCGACCATGCGCTCGGCCAACGTCGCCG 120811 | ||||| | || ||||| || || || |||| || | ||| || || | Sbjct 466 CACTGAAGAAGATTCCTTCCACCGCAGCGAACGCTACCAGACGGTTGGCAAAGGTGGAGT 407 Query 120812 TCTTG-CTGTCGATCCACTTCATGGCCCACTCGGCCTTTTTGCGCACGCACGG 120863 | ||| | | ||||||| || |||||| || ||||||||||| | ||| || Sbjct 406 TTTTGTCCGGAGATCCACCGCAGGGCCCAGTCAGCCTTTTTGCGGATGCAGGG 354 >seq8712 Length=1748 Score = 145 bits (160), Expect = 7e-30 Identities = 471/719 (66%), Gaps = 17/719 (2%) Strand=Plus/Plus Query 149066 CTCGAACGCCTCGCCGTAGCAATCGTCGAGACCGGGGCACTTGTGCGGGCACATGAGCGA 149125 |||||| |||| |||||||| || | | || ||||| | || ||||||||||| | Sbjct 88 CTCGAATTCCTCACCGTAGCAGTCAGCCAAGCCAGGGCATTCGTTGGGGCACATGAGAGT 147 Query 149126 CCACACGCCGTCCGCGTACACGCGCTTCATAAACAGATCGGGCACCCAGAGCGCGTACAT 149185 ||| |||||| | | || |||||||| |||| |||||| | ||| || || | Sbjct 148 CCAGTCGCCGTTCTTTTCAACACGCTTCATGAACAAATCGGGAATCCATAGAGCAAGGAA 207 Query 149186 GAGGTCGCGCGCCTTGCAGTCTTCGGCGCCCATGTTGCGGCGCAGGTTGAGCACGCTGAA 149245 |||||| || || || || ||| ||| ||||||| ||| | || Sbjct 208 GAGGTCACGGGCACGAACTTCCTCCTTGCCGTGGTTCTTTCGCAGGTCGAGGAACTCAAA 267 Query 149246 TATGTCCGCGTGCCACGGCTCAATGTACACCGCGAGCGCGCCCTTGCGCTTG---CCGCC 149302 | ||| |||||||||||||| | ||| | | | || || |||||| || || Sbjct 268 CACGTCTGCGTGCCACGGCTCCAGGTAAATGGGCAAAGCACCAGGTCGCTTGTTGCCACC 327 Query 149303 CTGGTCGACGTGGCGCACCATGTTGTTAAACACTCGAACCATAGGTTCAATGCCACTGGC 149362 ||||||||||| | | ||||||| ||||| |||| ||| || | | ||| | | Sbjct 328 CTGGTCGACGTATCTGGCGGTGTTGTTGAACACGCGAAGCATGGGAACGACGCCGTTTGA 387 Query 149363 AGTGCCGTTAGTAGAGCTAATG--CGACTGCCGCGCGCTCGCACTTTGTGCACGTTGACG 149420 |||||||| || | |||| ||| ||| || || | ||| ||||| | | Sbjct 388 GGTGCCGTTGGTGCCGGCAATGTACGA--GCCAGTGGCACGAATGCGGTGGACGTTCAGG 445 Query 149421 CCGATGCCGCC-GCCGTACTTTGAGATGGCCGCGCA-GTCGCCGAGCGTCGAGTAGATGC 149478 ||||||||||| ||| | ||| ||||| ||||| || | ||| || ||||||| Sbjct 446 CCGATGCCGCCAGCCAT-CTTGGAGATCATGGCGCACGT--CTGAGGGTGTCATAGATGC 502 Query 149479 CCTCGATGCTGTCGCGCTTCATGGTC-AGCAGAAAGCACGAGCACATTTGCGGAAAACGC 149537 | ||||||||||| ||||| ||| | || ||||| || ||| || || Sbjct 503 CTTCGATGCTGTCATCCTTCA--GTCGACAAGGAAGCAGGATGACAGCTGGCATTGTGGC 560 Query 149538 GTGCCGGCCGCGAACATGGTGGGGCTGGCGTGTGTAAAATATTT-CTGGCTCATCATCTC 149596 || || || ||| | ||||| |||||| || || |||| || | ||| | | Sbjct 561 GTACCAGCGTTGAATAGTGTGGGCGAGGCGTGGGTGAAGAATTTGCTCG-ACATGAGGTT 619 Query 149597 GTACGACTCGAGCACGCGGTCCATGTCATCGCCATGGATGCCTATGGCGACGCGCATCAG 149656 ||| | || || || || |||| || || || ||| || | ||| || ||||| | Sbjct 620 GTAGGTTTCCAGGACACGCTCCAGGTTGTCTCCCCAGATACCGACGGCAACACGCATAAT 679 Query 149657 CATATGCTGCGGTCGCTCCGCCACTTTGTTTCCAATTTTGAGCAAGTAGCCGTTTTCTAG 149716 ||| ||||| |||||||| | | ||| | ||||| | ||| || || Sbjct 680 CATGTGCTGTGGTCGCTCGACAATCTTGCCGTTGAGCTTGAGGAGATAGGATCGCTCCAG 739 Query 149717 TGTCTTGTAGCCAAAGTACTTGTAGTCAAAGTCGCGGCCGTGGTCAATGGCGGCGTCGA 149775 |||||| |||||||||||| ||||| ||||| | | ||| | ||||||| | ||||| Sbjct 740 AGTCTTGAAGCCAAAGTACTGGTAGTTGAAGTCTCTGTCGTAGACAATGGCAGAGTCGA 798 >seq117378 Length=621 Score = 122 bits (134), Expect = 8e-23 Identities = 306/450 (68%), Gaps = 20/450 (4%) Strand=Plus/Plus Query 148327 ACTCGTTGTTGCCCAAAATCTGCGCGGTCGTTGCCGTGGGCATGTACGCTACCAGCAGCG 148386 ||||||||||||||| |||||| | | ||| || ||||||||| || | ||||| | Sbjct 38 ACTCGTTGTTGCCCAGAATCTGTGAG-TCGAGGCAGTGGGCATGGG-GCGAGCAGCAAAG 95 Query 148387 AGTTGCGCAAACCGCGATTTTTTATTTTGCGCT-TCAGAGCCGCCCAGTCCCAGAGCGGC 148445 ||||||| | ||| | | | || | |||| | |||| |||| ||||| | Sbjct 96 AGTTGCGAATGCCGTGCTCCCTGATCTC-CGCTCTGAGAGTATCCCACTCCCACAAATCG 154 Query 148446 GACGGTGTCACGTTCCACATGTCGTACTGCAGAATGCCGCGGCTAGCGGGGCTGCCCTCG 148505 || || | || |||||||||||| |||| ||||| || | ||||| ||||| | Sbjct 155 GAAGGCTTAACATTCCACATGTCGAACTGGAGAATACCCTCGGAGGCGGGAGAGCCCTTG 214 Query 148506 TACGAGCTGTACGGTCCGTGCGCCGCCGCCAGTTCG-CAGCTCGCCTCGAGCGCGCCGTA 148564 | | | ||| ||||| ||| || |||| ||| ||| || || || ||| Sbjct 215 AAGGTGGAGTAAGGTCCCTGCTCCTTGGCCAACTCGACAG-AGGCAGTCAGAGCAGCGTG 273 Query 148565 GTAAATCGTCTCGGCAATTTGCCTGTTGAGC-----AGCGCCGCCGACTCGCTTTCGTAC 148619 ||| || ||||| |||||| |||||||| ||| || || | ||| || Sbjct 274 GTAGATGGTCTCAAAGATTTGCTTGTTGAGCTCACGAGCTTCG-GGAGAC----TCGAAC 328 Query 148620 GGCATACGCAGCCGCACAAACGCGTCGGCAAGGCCCTGTACGCCCACGCCAATGGGCCGG 148679 ||||| ||||| || ||||| |||||||| ||||| || || || || || || ||| Sbjct 329 GGCATGCGCAGAGCCAGGAACGCATCGGCAAGACCCTGGACACCAACACCGATAGGTCGG 388 Query 148680 TGTTTAATGTTGGAGAGGCGCGCGCTCTCGAGC-GGATAGTGGTTGCGGTCGATGATCTT 148738 ||| ||||| | ||| || ||| || | || ||||||||| || |||||||| Sbjct 389 TGTCGCATGTTACTGTTGCGAGC-CTCCTGAACAGGGTAGTGGTTGACATCAATGATCTT 447 Query 148739 G-TCAAGATTGCGCACCACCACCTTTGTAA 148767 | ||||| ||||| || ||||||| |||| Sbjct 448 GTTCAAG-TTGCGGACAACCACCTGAGTAA 476 >seq29103 Length=1863 Score = 100 bits (110), Expect = 3e-16 Identities = 136/189 (72%), Gaps = 2/189 (1%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCCC 133523 || ||||| || || || ||||| || | | ||| |||||| |||||||| || Sbjct 1093 GTCGACTCCTTTTGAATGTTGTAGTCTGCAAGAGTGCGGCCGTCCTCAAGCTGCTT--CC 1150 Query 133524 GCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTG 133583 | | || || ||||||||||| || || ||||| |||||||| |||||| |||| Sbjct 1151 GGCAAGATCAGGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTG 1210 Query 133584 AGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTT 133643 | | || | |||||||| || ||| || || | ||||| ||| ||||| ||||| || Sbjct 1211 ACATTGTCGATCGTGTCGGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCGTCAGGGTC 1270 Query 133644 TTTACGAAA 133652 || |||||| Sbjct 1271 TTCACGAAA 1279 >seq28556 Length=388 Score = 100 bits (110), Expect = 3e-16 Identities = 148/207 (71%), Gaps = 2/207 (1%) Strand=Plus/Plus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAG 133513 || || | ||| ||||| || || || |||||||| | || | | | || || || Sbjct 77 AAGTGAAGGGTAGACTCCTTTTGAATGTTGTAATCAGAGAGGGTACGGCCA-TCTTCCAG 135 Query 133514 CTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGAT 133573 |||||| || ||| | ||||| ||||||||||| ||||| |||||||| ||||| ||| Sbjct 136 CTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAGGAATGCCTTCTTTGTCCTGGAT 195 Query 133574 CTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCC 133633 ||| ||||| | |||| || || | | ||| || || | |||| ||| ||||| Sbjct 196 CTTCGACTTGACATTGTCAATGGTATCCGAAGACTCTACTTCTAGCGTGATGGTCTTGCC 255 Query 133634 GGTCAGAGTTTTTACGAAAATCTGCAT 133660 ||| || || || ||||| || ||||| Sbjct 256 GGTGAGGGTCTTGACGAAGATTTGCAT 282 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 482633428372000