Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20arachidis_20[genbank_20GCA_5F001013415.1_202015-05-26] 130,300 sequences; 87,617,276 total letters Query= NC_024791.1 Length=50440 Score E Sequences producing significant alignments: (Bits) Value seq28764 224 3e-54 seq72771 194 5e-45 seq35356 194 5e-45 >seq28764 Length=21750 Score = 224 bits (248), Expect = 3e-54 Identities = 729/1112 (66%), Gaps = 39/1112 (4%) Strand=Plus/Plus Query 18914 TACAGCAGAAGCTAAAGCATCCTTAATGTCATCGTGAGGTGGTCGAGCCAACACAAGTTC 18973 ||||||||| || | |||||||| |||||||| | || ||||| || || || Sbjct 542 TACAGCAGATGCCAGGCTATCCTTAACATCATCGTGGGCCGGACGAGCTTGCATCAGCTC 601 Query 18974 TTCCTCAAGCATTGGAGTGTATCCACCTTTTCTATGCCACATGATTCCT-TGCTCATAAC 19032 ||| || || | || ||||| || |||| ||||||||| | | | | |||||| | Sbjct 602 TTCTTCCAGGACAGGGGTGTACCCCCCTTCGAAATGCCACATC-TGCATATTCTCATATC 660 Query 19033 GAGGTTCCAGTACCGCCGCCATACGTTCTTCCTTAGAACCAAGCGCCTTGG-TAGGACGG 19091 || ||||| | | || || ||||| || || |||||||| || | || | |||||| Sbjct 661 GACTTTCCAATGCTGCTGCAATACGCTCCTCTTTAGAACCTT-CGTGTCGGCTGGGACGG 719 Query 19092 AACTCATCAA-TGCTAATGGTCATGCCTTC---CTTGCGTAACTTGTCCTTAATGTCATT 19147 | ||||||| || || | ||| ||||| |||| || | | || || || || Sbjct 720 TATTCATCAACTGATA-TCCCCATACCTTCTTTCTTGATAAAAT---CTTTGATATCGTT 775 Query 19148 AACAATGATTTGCTGTGCTACGGTAACTTCCGCACGTAGCTTCTTGAATTCCCATTTACT 19207 || |||||||| ||||| || ||||| || || || | |||||| || | |||| | Sbjct 776 TACTATGATTTGTTGTGCAACAGTAACCTCAGCTCGCAACTTCTTAAAGTGCCATCTTGA 835 Query 19208 ATGTAGAGCTGAAATGTGTTCATAGTAGTCGTTAATCTTATCGGTTTTGAATCGGTCAAT 19267 ||| || | |||||||| |||| || | || |||| |||||||| ||||| || Sbjct 836 ATGAAGCTGGGCAATGTGTTTGAAGTATTCAATTGTCCTATCTGTTTTGAAACGGTCGAT 895 Query 19268 ATCTAACACGTAGATATAACCCCCAGAGTCAATCCCAATAACTACAATCGCTGTAAAGTC 19327 || || || ||||||| | |||| |||||||| ||||| || || | || |||| Sbjct 896 GTCCAATACATAGATATTAGAATCAGAATCAATCCCTATAACAACGATTGAGGTGTAGTC 955 Query 19328 GGCCTTCTTAGAAAGAGAGAACGCAAAGTCCACAGCAGCAAAGATGTTAAGTGGTCTGTC 19387 || || || | | || ||||||||||| |||||| ||| ||||| | | || Sbjct 956 AGCAGATTTTGATAAACTAAATGCAAAGTCCACCGCAGCATAGACATTAAGCCTTTTATC 1015 Query 19388 CTTAAA---CCAGTATCTACCATCTCTGTAAGTCAGATATTTCTCATCGTAGTATTGGAA 19444 ||| | ||||| | ||||| |||| || || | | || | ||||| || Sbjct 1016 TTTATAATGCCAGT---TGCCATC---GTAACGCAAATGCCTTTGGTCAAAATATTGAAA 1069 Query 19445 ACTGTTGTGATTTAAA--CGTGCCGATTCTGGGTCGTTTGGGTTGTTGTAGTACTGAGCG 19502 | || | | ||| || || || | ||||| || |||| || |||||||||||| Sbjct 1070 GCGGT--CAACTGAAATTCGAGCTGAGCCAGGGTCATTAGGGTCATTATAGTACTGAGCG 1127 Query 19503 AAGAACTGAACACGGTCCACGTATTTAGCTTTCTTCTTAGCAAGAACACGGTTATCGAAA 19562 || || || || | || | |||| | | || | |||| |||| ||| Sbjct 1128 TGAAATTGCACTTTATCGATATACTCAGCTCTAATGCGTGCTAAGACACCCATATCAAAA 1187 Query 19563 CCAAACTTCTTACCATCAGAACCACGAGAAGTACGAGGCCAGATAAATACACCATCTTCT 19622 || || ||||||||| |||||| ||| | |||||| || || |||||| | Sbjct 1188 CCGAATGCCTTACCATC---ACCACGTATAGTTCTAGGCCATATGAAGCGCCCATCTCGT 1244 Query 19623 TCAACTACCCGTTCAAAAATATCCCAAACTGGACGTTCT-TCTCCTGTCTCTTCTCCATC 19681 || || | |||| |||||||| || || | | || ||| | || | |||| Sbjct 1245 TCTACGGCATGTTCTCGTATATCCCAGACAGG-CATCCTATCTAACAACACTCCGTCATC 1303 Query 19682 CTCATCGAAGACAGGTTGACGTTGATTCTTCCATGTATCGTAAATGTCAGCAGGGTGATA 19741 |||| | || || | || | ||||| ||||||||||| || || || || Sbjct 1304 ATCATACACTTCA-TATGTC--TGGGTTTTCCAAGTATCGTAAATATCTCTTGGATGGTA 1360 Query 19742 ACGTGTACCACACGCTTTAACAATTCCATCTGCGTTAAGAATAGATTCCATCTGAGA--- 19798 ||| || ||||| ||| | || |||| | || || ||||||| | |||||| Sbjct 1361 ACGAGTGCCACATGCTAAAGTAAATCCACCAGCATTTCGAATAGAAGTAAACTGAGAGGC 1420 Query 19799 CATAGCAGCAGCTACCTTGCGTCTACCATCCTCAGTATATGCGTTATCTGGAACTACAAC 19858 | | | | | ||| || ||| || ||||||||||| || ||||| || | Sbjct 1421 CTTTTTACTAACATCCTCACG---ACCCCGTTCTGTATATGCGTTCTCAGGAACCACTAA 1477 Query 19859 GTCATCAGAAACAATAACATCAGCGTGCCAACCAGTGGTGTTAGTGGTGAGGCCAGCAGT 19918 |||||| || || || ||||| || ||||| |||||||||||||| || | || || || Sbjct 1478 GTCATCGGATACGATTACATCTGCATGCCATCCAGTGGTGTTAGTTGTTAATCCTGCTGT 1537 Query 19919 CTTGATGGTAAAGTCTCGGACGCCTTCCATCTTACGTTTTGGGTGGTCAACTGCGATTGC 19978 || ||| ||||| || || || || |||||| || ||||||| || | Sbjct 1538 AGCAATTGTAGCATCTCGAACTCCCTCTTTCCTACGTTGGGGATGGTCAATCTTAATCTC 1597 Query 19979 ACTGTTTGTCCATTTCTCACGTTTACCCTCCT 20010 | | |||||| ||||| | ||| || |||| Sbjct 1598 AGCCTCTGTCCACTTCTCCCTTTTCCCTTCCT 1629 Score = 105 bits (116), Expect = 2e-18 Identities = 126/169 (75%), Gaps = 4/169 (2%) Strand=Plus/Plus Query 18529 CTTCCCACTTTAACCAACGCTCATTTGGAAACAATGCGCTGATATAGTTGGAGTGTAGGT 18588 ||||||| | | |||| ||||| || |||||||| ||| ||||| || |||| || Sbjct 132 CTTCCCATCTCATCCAAGAGTCATTAGGGAACAATGCAGAGATGTAGTTAGAATGTAAGT 191 Query 18589 TATCTCGAATCTGACATAACTTAGGTAAGGTTGTTTTGTTCTTCCACGGTAACGTGCT-- 18646 |||| ||||||||||| | |||||| | ||||| ||||||||| || | ||| | Sbjct 192 TATCCCGAATCTGACAAAGCTTAGGGATTGTTGTGGAGTTCTTCCAAGG--AAGTGATTG 249 Query 18647 GTTAGTTGTGGTTGTGGTATCTGTAGCAAATACGTAATTACGTAGTTCT 18695 |||| |||| || | || || |||||||| | |||||||| |||||| Sbjct 250 GTTACTTGTAGTGGAAGTGTCCGTAGCAAAAATATAATTACGAAGTTCT 298 >seq72771 Length=649 Score = 194 bits (214), Expect = 5e-45 Identities = 244/331 (74%), Gaps = 12/331 (4%) Strand=Plus/Minus Query 17299 CTTGAGCTTGTTCTGCAAAGTGTCGAGCACCTACAGGACGAAGTCTACCTTTTGCTGTAA 17358 ||||||| || | |||||||| |||||||| |||||||||| | || ||||||| Sbjct 423 CTTGAGCCTGCTTAGCAAAGTGACGAGCACCAACAGGACGAATACGTCCAGAAGCTGTAA 364 Query 17359 TGTCGTCTTTACTAACACTCATGAAGGT---TGCTACTTTGTCATCAGTATCAAATACAC 17415 | || | ||| | | | |||| |||| | |||||| |||||||| | Sbjct 363 TATCTTGCTTAGTGATTTCCTGGAAGAACTGTGCTCCCAGCTCATCA---TCAAATACTC 307 Query 17416 GGATAACATCAGAAATATCAATGTTACGTCGAGCAATCTCCAACATAGCATTGAGTACT- 17474 | || ||||| ||| || |||||||||||| | |||| ||| ||||| || || Sbjct 306 GAATTACATCCATTCCATCCATATTACGTCGAGCAGTTTCCAGCATTGCATTAAGAACAG 247 Query 17475 -TTCT-CCATTAGCATGACTTCAAAGTTGATAATCTTCTCTTGGAAGATACGACCTGCTG 17532 ||| ||||| || ||||||||| | || ||||||||||| |||||||| ||| Sbjct 246 GTTCAACCATTTCAAT---TTCAAAGTTTGTTATTTTCTCTTGGAAAATACGACCACCTG 190 Query 17533 CATTCTGGAGTTGTTGAACCTCAAATGCTGTTTTCTCACCGGGAGTACGAATACCCATAG 17592 | ||||| || |||||||| || |||||||| |||||||| |||| |||||||||||| | Sbjct 189 CGTTCTGTAGCTGTTGAACTTCGAATGCTGTCTTCTCACCAGGAGAACGAATACCCATCG 130 Query 17593 CTTCACGAGGAGCACCTGCAAACTCTTCCAT 17623 |||||||||||||||||||| || ||||| Sbjct 129 CTTCACGAGGAGCACCTGCATACATCTCCAT 99 >seq35356 Length=5999 Score = 194 bits (214), Expect = 5e-45 Identities = 447/655 (68%), Gaps = 45/655 (7%) Strand=Plus/Plus Query 17299 CTTGAGCTTGTTCTGCAAAGTGTCGAGCACCTACAGGACGAAGTCTACCTTTTGCTGTAA 17358 |||||||||||| ||||| || |||||||| || ||||||| | ||| ||||||| Sbjct 5299 CTTGAGCTTGTTTAGCAAAATGACGAGCACCAACTGGACGAATGCGTCCTGCCGCTGTAA 5358 Query 17359 TGTCGTCTTTACTAACACTCATGAAGGTTGCTACTTTGTCA--TCAGTATCAAATACACG 17416 | || | |||| | | || || | | || | || ||| ||||||||| || Sbjct 5359 TATCTTGTTTAGTGATT-TCTTGGAAGAA-CTGCGCCCCCAGCTCATCATCAAATACTCG 5416 Query 17417 GATAACATCAGAAATATCAATGTTACGTCGAGCAATCTCCAACATAGCATTGAGTACT-- 17474 || ||||| ||| || || || |||| | || | ||| ||||| || || Sbjct 5417 AATTACATCCATTCCATCCATATTGCGACGAGAGGTTTCAAGCATTGCATTAAGAACAGG 5476 Query 17475 TTCT-CCATTAGCATGACTTCAAAGTTGATAATCTTCTCTTGGAAGATACGACCTGCTGC 17533 |||| ||||| || |||||||||| |||||||||||||||| |||||||| | || Sbjct 5477 TTCTACCATTTCAAT---TTCAAAGTTGGTAATCTTCTCTTGGAAAATACGACCACCAGC 5533 Query 17534 ATTCTGGAGTTGTTGAACCTCAAATGCTGTTTTCTCACCGGGAGTACGAATACCCATAGC 17593 |||||| || |||||||| ||||| || |||||||| || |||| |||||| |||||||| Sbjct 5534 ATTCTGAAGCTGTTGAACTTCAAAAGCAGTTTTCTCTCCAGGAGAACGAATCCCCATAGC 5593 Query 17594 TTCACGAGGAGCACCTGCAAACTCTTCCAT---CT----TAGCTTCCAAGATTTGG--AT 17644 |||||||||||||||||| || |||||| || |||| | ||||| | | Sbjct 5594 TTCACGAGGAGCACCTGCGTACATTTCCATACGCTGTTCTAGC-TGAGCGATTTCGTTGT 5652 Query 17645 TTGCATA-TCTGC----TTGTAGAGCTT------GTGTGTTAGGAGCCATCATTTCCACA 17693 | ||| | || | ||| | ||| | ||||| ||| ||| || || Sbjct 5653 TAGCAGACACTACGCCATTGAGGTTCTTACCAAGCTCTGTTA-CAGC--AGATTGCCCCA 5709 Query 17694 TCACCGTCTCCGTTAATGTAGATTTGTTCCATTGGTCCCCATACAAACTCTTCCACATCG 17753 || | || ||||||||| | | ||| | | |||| || || ||||| Sbjct 5710 -CATCATC------AATGTAGATGCGGCCTCCTGGCTCGTAATCAAAATCCTCGACATCT 5762 Query 17754 CCTTTAACTTTCATAG--GTGGAAACGCAATCAAGTCAAATACGTCAGCCTTCAAGTTCT 17811 || | || || || || |||| | || ||||| | | || || || | ||| | Sbjct 5763 CCCTGAA-TTACA-AGCATTGGATGCACAGCTAAGTCCATAGCATCCGCTTTGAGGTTTT 5820 Query 17812 CCAAGTGGTCAATACGATATTGCATACCAACCAAGTTATCTAAAGGCCCCATAGCATACA 17871 | | ||||||||||||||||||||| || ||||||||||| | |||||||||||| | | Sbjct 5821 CTAGGTGGTCAATACGATATTGCATTCCCACCAAGTTATCCAGAGGCCCCATAGCCCAGA 5880 Query 17872 AGTTGTCTTGACGAATACGCCAACCACAATGGAAGATTGGAGCTTGTGCAAACCA 17926 |||||| ||| | |||||| || |||||||| |||| | ||||||| Sbjct 5881 GGTTGTCAGTACGGAAACGCCAGCCTACATGGAAGAACGGAGATGTACCAAACCA 5935 Score = 154 bits (170), Expect = 5e-33 Identities = 368/549 (67%), Gaps = 12/549 (2%) Strand=Plus/Plus Query 15412 ATTCAGAGTTGCCTCAACGATTGGGTCAACAATCAGAATACGACCACCTAGCGGAACGTT 15471 |||||| || || || |||||||||||| |||| | | ||| || || |||||||| Sbjct 3330 ATTCAGGGTAGCTTCTACGATTGGGTCAGCAATGAACACACGGCCTTCTGCTGGAACGTT 3389 Query 15472 AGCTTTATCAGCAGCCAGTTTCAGGTAAATCAAATCTTCTAGTTCTAGAGTTTTGTTAGT 15531 ||| ||||| || || || ||| | | | || | | ||||| || Sbjct 3390 AGCCTTATCGAATGCAAGACGCATAGCAATGAGCTGTGACAGGCTGAAAACGTTGTTGGT 3449 Query 15532 ACCTGTAG---CGATACGCTTGTGAGCAAAGCCGTTAATCTCGTTAGCATCAGCAACAGT 15588 | || | ||||||| ||| ||||||||||| || ||||| | || || Sbjct 3450 TTCAGTGGAGGCGATACG---GTGCGCAAAGCCGTTGATGGTGTTAGGGTTGGCGTTTGT 3506 Query 15589 CAGACCTTCGTAAGCCACTTGGAGGTAACG-AGTTTCAAAGTCTTCTTGCATCGCACGAG 15647 | ||||| ||| ||| | | | || | ||||||||| |||| || || ||||||| Sbjct 3507 CTGACCTGCGTTAGC-AGTAGCCAAGAAGGTAGTTTCAAACACTTCCTGAATAGCACGAG 3565 Query 15648 TAGACTCTTGAGCACGCATCGCCATCAGAGTTTCGATTTGAGAACCATCTTGACGCAGTT 15707 || || || ||| |||||||||| || || |||| |||||||| ||| | Sbjct 3566 TACCTTCGATAGAGCGCTGAGCCATCAGAGCATCAATCTGAGCACCATCTTCTTTCAGGT 3625 Query 15708 TATCGGTAACAGACCAAGCATCGCCTTTGTAATCGGTAATACGCATTTGAACGTTACCAG 15767 ||| || ||| |||| ||||| ||||| || | || || | || || | ||| | Sbjct 3626 CATCAGTTACATACCATGCATCACCTTTATACTGAGTGATGGTGAGCTGTACTTCACCTG 3685 Query 15768 TTTCGATTGGGTTGTAAATCAGTGGAGTTTCTTCTTCAACATCCTGAATAGTTACAGTAC 15827 ||| ||||||||||||||||| ||| |||||| | |||||||||||||||||| || Sbjct 3686 ATTCAATTGGGTTGTAAATCAGAGGAACGTCTTCTGCCGCATCCTGAATAGTTACAGAAC 3745 Query 15828 CAACCGTTTTAATGTTTAGAACTTCACCAGCAGGGAAGTCAGAGACGTTACGGTACATCA 15887 ||| ||||| |||| || ||| | | |||||||| || || || || | | Sbjct 3746 CAATTGTTTTGATGTGGAGGGTAGTACCTGAACCGAAGTCAGTTACATTGCGATAGA--A 3803 Query 15888 TTGCT-GGCAAG-AAACCGTCATGCAGGTTTTCCAGAATGAATTTTGAATATTGTTGCGC 15945 |||| |||| | ||| || |||||||| |||||| || |||||| |||| || Sbjct 3804 CTGCTCACCAAGCAGACCATCGTGCAGGTTCATCAGAATAAAAGATGAATACTGTTCTGC 3863 Query 15946 CTCAATAAA 15954 || || || Sbjct 3864 TTCGATGAA 3872 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 161036839537200