Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20arachidis_20[genbank_20GCA_5F001013415.1_202015-05-26] 130,300 sequences; 87,617,276 total letters Query= NC_024794.1 Length=167318 Score E Sequences producing significant alignments: (Bits) Value seq33108 190 2e-43 seq49234 129 6e-25 seq31280 122 9e-23 seq72596 116 4e-21 seq50823 109 6e-19 seq34305 96.9 4e-15 seq49372 84.2 2e-11 >seq33108 Length=3479 Score = 190 bits (210), Expect = 2e-43 Identities = 152/183 (83%), Gaps = 0/183 (0%) Strand=Plus/Minus Query 61278 TTATAGACTCTCAGTAAAGGTACGAGCGATAACGTCGCGCTGTTGTTCCGGAGTCAGAGA 61337 ||||| ||| || ||||||||||| || || ||||| ||||||||||| || ||||| || Sbjct 2968 TTATAAACTTTCCGTAAAGGTACGGGCAATGACGTCACGCTGTTGTTCAGGCGTCAGCGA 2909 Query 61338 GTTAAAGCGAACTGCATATCCGGATACACGGATGGTCAGCTGCGGATATTTTTCCGGATG 61397 |||||||| || ||||| ||||| ||||| ||||||||||||||||| || || ||||| Sbjct 2908 ATTAAAGCGCACGGCATACCCGGAAACACGAATGGTCAGCTGCGGATACTTCTCAGGATG 2849 Query 61398 CTTAACTGCATCTTCCAGAGTTTCACGACGCAGAACGTTAACGTTCAGGTGTTGACCACC 61457 || || || |||||||| |||||||| ||||| ||||||||||| | ||| || || || Sbjct 2848 TTTCACGGCGTCTTCCAGCGTTTCACGGCGCAGGACGTTAACGTTTAAGTGCTGCCCGCC 2789 Query 61458 TTC 61460 ||| Sbjct 2788 TTC 2786 >seq49234 Length=879 Score = 129 bits (142), Expect = 6e-25 Identities = 135/176 (77%), Gaps = 1/176 (1%) Strand=Plus/Plus Query 63674 AATGTTACGTGACCTGTGCCTAAGATAAATGTTGGAGAGATTTTAAAATCCTTTACACGT 63733 ||||| || |||||||| ||||| || | || | | |||||||||||| || | ||| Sbjct 375 AATGTAACATGACCTGTACCTAA-ATGTAGGTAGTACTGATTTTAAAATCATTGATTCGT 433 Query 63734 TTACCATTTTGAACATGTTTACGGACTGCACCGAATACACGAGGTAATTCGCGATACTCA 63793 |||||| ||| || || ||||| || |||||||||||||| || ||||| || || ||| Sbjct 434 TTACCAGCTTGTACGTGCTTACGAACAGCACCGAATACACGTGGCAATTCACGGTATTCA 493 Query 63794 GCCATAAGATGTTGGTCGGCCAGTTCAGAAACAAGTGTTAAATTGATACGAGTCAT 63849 ||||||||||||||||| || | ||| || || | ||||||||| ||||| Sbjct 494 GCCATAAGATGTTGGTCAGCTAATTCTTGTACTGGTACGAGATTGATACGGGTCAT 549 >seq31280 Length=10079 Score = 122 bits (134), Expect = 9e-23 Identities = 145/197 (74%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 141903 CCGTAGTCCATATGTCGAATACGGTTTTCATCCACACCTTTGTTATTTTTCAGAACTAAT 141962 ||||||||||| || || | ||||| | |||||||| ||| |||||||| ||||| Sbjct 1354 CCGTAGTCCATGTGACGTACGCGGTTACCTTCCACACCACGGTTGTTTTTCAGGACTAAC 1413 Query 141963 AGGTTCTCTACTTCTAAGTGCCACATCGGATAATACGCTGTAGCAGCACCGCCGCGAATA 142022 ||| | |||||||| | |||||||||||||| || || || || ||||| || | Sbjct 1414 AGGCTTTCTACTTCCAGATGCCACATCGGATAGAACAGCGTCGCTGCGCCGCCACGGACG 1473 Query 142023 CCACCTTGAGAACAAGATTTTACTGCAGTTTGGAAATGTTTCCAGAATGGAATAACACCT 142082 || || || ||||| ||||| || || || ||||| || || |||| || ||| ||| Sbjct 1474 CCGCCCTGCGAACAGGATTTCACCGCTGTCTGGAAGTGCTTGTAGAACGGGATACAACCG 1533 Query 142083 GTATGTCGAACTTCACC 142099 ||||| | ||||||| Sbjct 1534 GTATGGAAAGCTTCACC 1550 >seq72596 Length=790 Score = 116 bits (128), Expect = 4e-21 Identities = 182/257 (71%), Gaps = 10/257 (4%) Strand=Plus/Minus Query 45423 ACGCCAAGATTATTACGACCGTCAAGAATTTCATTTCCAGTTGAATCTTTCCATACGCTC 45482 || |||| |||| | ||| || | ||||||||||| || |||||||||| || Sbjct 774 ACACCAATATTAAATCTACCATCGAATTTTTCATTTCCATTTTCATCTTTCCATGAACT- 716 Query 45483 AAGAAACTACGACAACCCATTGGAGAAACAGGAACAGAT---GAACCAGTGATAGCTTTA 45539 |||||| |||||||||||||||| ||| |||| ||| ||| || | |||| Sbjct 715 AAGAAAGAACGACAACCCATTGGACTAACTGGAATTGATTCAGAATGCGTCA---CTTTT 659 Query 45540 TTATTC---TTAACCGAAATAATGTCAGGATACATTCTTTTGCTTGCACATTCTAATGCA 45596 |||||| | ||||| || | || ||||| |||||||| |||| || | ||| Sbjct 658 TTATTCAAGTCTACCGATATGAAATCTGGATATATTCTTTTAGATGCAGTTTTAATTGCT 599 Query 45597 AGTTGTTTAATATCATAGTTCGGATCATCTTTATAAAGATTAACACCTTCTTCAACAAAC 45656 ||| ||| | |||||| || ||||||| || | |||||| ||||| |||| || ||| Sbjct 598 TGTTCTTTTAAATCATAATTAGGATCATTTTCTTTAAGATTTACACCATCTTTAAGAAAG 539 Query 45657 ATAACAAGTTTAGGAAA 45673 | | || ||||||||| Sbjct 538 AATATAACTTTAGGAAA 522 >seq50823 Length=3276 Score = 109 bits (120), Expect = 6e-19 Identities = 134/182 (74%), Gaps = 1/182 (1%) Strand=Plus/Plus Query 63668 TAAAAGAATGTTACGTGACCTGTGCCTAAGATAAATGTTGGAGAGATTTTAAAATCCTTT 63727 ||||| || || || || ||||| || | ||| | || | ||||||||||| || Sbjct 128 TAAAAAAAGGTAACATGTCCTGTTCCAAGAATATAGCTTTTACTTATTTTAAAATCATTA 187 Query 63728 ACACGTTTACCATTTTGAACATGTTTACGGACTGCACCGAATACACGAGGTAATTCGCGA 63787 | | ||| ||| | ||| ||||| | |||||||| |||||||| |||||||| ||| Sbjct 188 ATA-TTTTCCCAGCATCAACGTGTTTCCTTACTGCACCAAATACACGTGGTAATTCACGA 246 Query 63788 TACTCAGCCATAAGATGTTGGTCGGCCAGTTCAGAAACAAGTGTTAAATTGATACGAGTC 63847 || |||||||| |||||||| ||||||| ||| ||| | |||||| || |||||| Sbjct 247 TATTCAGCCATCAGATGTTGATCGGCCAATTCCTGAACCGGAACTAAATTTATCCGAGTC 306 Query 63848 AT 63849 || Sbjct 307 AT 308 >seq34305 Length=2218 Score = 96.9 bits (106), Expect = 4e-15 Identities = 125/173 (72%), Gaps = 0/173 (0%) Strand=Plus/Plus Query 61291 GTAAAGGTACGAGCGATAACGTCGCGCTGTTGTTCCGGAGTCAGAGAGTTAAAGCGAACT 61350 ||||||||||| | || ||||| |||| || || || || |||||||||||||| Sbjct 599 GTAAAGGTACGGGTAATCACGTCCTGCTGCTGCTCTTTGGTGAGCGAGTTAAAGCGAACG 658 Query 61351 GCATATCCGGATACACGGATGGTCAGCTGCGGATATTTTTCCGGATGCTTAACTGCATCT 61410 ||||| || || || |||||||| | ||| |||||||| || || | | | ||| || Sbjct 659 GCATAGCCCGAAACGCGGATGGTTAACTGAGGATATTTCTCAGGGTTATCCATTGCGTCC 718 Query 61411 TCCAGAGTTTCACGACGCAGAACGTTAACGTTCAGGTGTTGACCACCTTCAAT 61463 || |||| || || |||||||| ||||| || || || |||||||| Sbjct 719 ATCAACATTTCCCGGTTCATCACGTTAACATTCAGATGCTGGCCGCCTTCAAT 771 >seq49372 Length=1062 Score = 84.2 bits (92), Expect = 2e-11 Identities = 124/176 (70%), Gaps = 0/176 (0%) Strand=Plus/Plus Query 67018 TACATACTTACAACTTTGCTGTAGTTTTCCCAGGCGTATTCACGGAACCAACCGGAGGTG 67077 |||||| | || ||| | | | || ||||| | |||| | ||||| || || || Sbjct 325 TACATATTAACTACTGTATTAAAATTCTCCCAAGAAAATTCTCTAAACCATCCTGACGTA 384 Query 67078 ATGCTTGTGCAGACTTTTTCTAATGCCATCATGAAACTGGCTTCAGGGTTAATTTTAAAG 67137 || || | || ||||| |||| || | || ||||| ||| | ||||| ||| Sbjct 385 ATACTACTACACACTTTAACTAAAGCAGTAATAAAACTCTGACGAGGATCAATTTCAAAA 444 Query 67138 TCATTAGGAATCTGAGAACGTTCTAACGCTAGTACACATGATTCTTCGTATACACC 67193 | |||||| || || ||||||||||| || || ||||||| |||||| |||||||| Sbjct 445 TTATTAGGGATTTGTGAACGTTCTAATGCAAGAACACATGTTTCTTCATATACACC 500 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 534417747064000