Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20arachidis_20[genbank_20GCA_5F001013415.1_202015-05-26] 130,300 sequences; 87,617,276 total letters Query= NC_025414.1 Length=178171 Score E Sequences producing significant alignments: (Bits) Value seq33499 462 2e-125 seq31280 246 3e-60 seq33108 170 2e-37 seq62284 131 2e-25 seq36028 100 3e-16 seq38626 96.9 4e-15 seq34305 95.1 1e-14 >seq33499 Length=26748 Score = 462 bits (512), Expect = 2e-125 Identities = 596/818 (73%), Gaps = 12/818 (1%) Strand=Plus/Minus Query 80508 TTACGAGAATCGAAAATCACTTTACCAGCGTAATCCGAACCCATGACAGTCTGAGGTACA 80567 ||||||| ||| | ||||| ||||| |||| || ||| || || || || |||||| Sbjct 24093 TTACGAGCATCCATAATCAACTTACCTTCGTAGTCACCACCAATAACTGTTTGTGGTACA 24034 Query 80568 TCACCTTTATAACGGGTAGAGTAGTTCATCTGTACATCCAGTTCTTTCCAGCGGATCATT 80627 |||||| || || ||||| | || || |||| |||||| || ||||| Sbjct 24033 CCACCTTGGTATTTCTCAGCACGTTTCATTTCAACTTCGAGTTGTTTCCAACGAATCATC 23974 Query 80628 TCTGGGGTAATTGTGCGTTGCAGTACGGCGTTAGCCTCTGCTTCTTTCTTCGCCGCGTAC 80687 ||||| || ||||| |||| || |||||| || |||||||| | || || || Sbjct 23973 TCTGGAGTGATTGTTTTCTGCAACACACTGTTAGCTTCAGCTTCTTTTTGAGCAGCATAT 23914 Query 80688 AGTTTAGCATCAGCATCACGTTCGTTGGCGATTGCTTCGTTTTCACGCGCCTGACGATTT 80747 | ||||||||| ||||| |||||||| || ||||| || | ||| || | |||| Sbjct 23913 AATTTAGCATCTGCATCTCGTTCGTTTGCCTGGGCTTCATTATTACGGGCTTCTCGATCA 23854 Query 80748 GCTTCCGCTTGTTTTACTGCTTGCTGTGAAGTCTGTT-CGACTTTTGCCAGTTCCGCACG 80806 || || || | || ||||||||||||| ||| | | ||| |||| || || | Sbjct 23853 GCCTCTGCCTTCTTAACTGCTTGCTGTGTT-TCTTTAGCTACTCGGTCCAGATCAGCCTG 23795 Query 80807 AGCGGCGTTAACCTGTTCTTCGCGGATCTTCGTGTTCGTTACCTGTTCCATGATAACATC 80866 || ||||||||||||||||| || ||||| || || |||||||| | |||||| ||||| Sbjct 23794 TGCTGCGTTAACCTGTTCTTCACGAATCTTTGTATTTGTTACCTGCTTCATGATTACATC 23735 Query 80867 AGGCAGGGTAATATCCTGCAAGAATACCTGTTTCACGGTGTAACCGTAAGGACGTGCATA 80926 ||||| ||| ||||| |||||||| | | ||| || || ||||| ||||||||||| || Sbjct 23734 AGGCAAGGTGATATCTTGCAAGAAGATTTCTTTTACAGTATAACCATAAGGACGTGCGTA 23675 Query 80927 CTCTTCAACTTC--CTGTT---GAATCGCGGTCTGCAACTGGTTCTGGATCTTAGCATCG 80981 |||||| ||| || || ||||| ||||||||| ||| |||| ||| | | Sbjct 23674 GGCTTCAATTTCAGCTTTTACTGAATC-----CTGCAACTGCGCCTGAATCTCAGCGTTG 23620 Query 80982 AACAGATCCTGTGCTTTCGGAACTGATTTACCGAACTCACGAACGGTAGACAGCAGTTTT 81041 |||| ||||||||||||||| ||||||||||| ||||| || || || || | || ||| Sbjct 23619 AACAAATCCTGTGCTTTCGGGACTGATTTACCAAACTCTCGGACAGTGGATAAAAGCTTT 23560 Query 81042 TCGGTTACATATTTATCCAGCGCTTGTTCCTGATCTCCCGCGTTGATGCGGTTGATAGGC 81101 | |||||||||||||| ||||| || ||| || || || || ||||| ||||| Sbjct 23559 TGCTCAACATATTTATCCAGAGCTTGCTCTTGAGTGCCTGCATTAATTCGGTTCATAGGT 23500 Query 81102 GCTTTGTTACCGTCAAATTGCAGCATAACAGTCATATCCACGGTGGATTTAAACTTATCC 81161 || || ||| ||||| |||| |||||| ||||||||||| || ||||||||||||||| Sbjct 23499 GCCTTAGAACCATCAAACTGCAACATAACGGTCATATCCACTGTTGATTTAAACTTATCC 23440 Query 81162 TGTGAAGGAACCTGCAATTTATCGAATTTCTTCGCGATGTCTTTCGTGCTGAAAGTATCG 81221 || || || ||||||||||| || | | ||| ||||| || |||||||| || Sbjct 23439 TGACTCGGTACTTGCAATTTATCATATGTTATTTTGATATCTTTTGTACTGAAAGTCTCA 23380 Query 81222 AAATCAGCCAGCGGGTTTACGATATGGAAACCAGGCATTACAGGTTTCGGAGAAACCTTA 81281 || || | ||||| || | |||||| || ||| ||||||| || ||| ||| ||| Sbjct 23379 AAGCTTGCAAATGGGTTAACCACATGGAACCCTGGCTTTACAGGATTAGGATTAACTTTA 23320 Query 81282 CCCATGAAGGTCTGGGTTTTGACCGTACCGTCCTGTAC 81319 ||||| ||||| || ||||| || ||||| || || || Sbjct 23319 CCCATAAAGGTTTGTGTTTTTACTGTACCATCTTGCAC 23282 >seq31280 Length=10079 Score = 246 bits (272), Expect = 3e-60 Identities = 431/625 (69%), Gaps = 18/625 (3%) Strand=Plus/Minus Query 41180 CCTACGCCTATTATGGCTGGTGTGCGTACTCCTACGCGTCAGTTTTCCAGTTGCGTAGTG 41239 || ||||| || ||| | || |||||||| || || |||||||| | || || || Sbjct 1739 CCGACGCCAATCATGTCGGGAGTGCGTACGCCAACCCGTCAGTTCAGCTCCTGTGTCCTG 1680 Query 41240 ATTGAATCAGGTGATTCCCTGGGTTCTCTGAATGCTGTAACCTCT---GCGATCGTGAAG 41296 ||||||| || || ||||| ||| | || || ||||| || || ||||| Sbjct 1679 ATTGAATGTGGCGACAGCCTGGATTCCATCAACGCG---ACCTCCAGCGCTATTGTGAAA 1623 Query 41297 TATATTTCACAACGTGCTGGTATCGGTGTTAATGCTGGACACATTCGCGCAATGGGTTCT 41356 || |||||||||| || ||||| ||| |||| || || | || ||||| |||| Sbjct 1622 TACGTTTCACAACGCGCAGGTATTGGTATTAACGCGGGTCGTATCCGCGCGCTGGGCAGC 1563 Query 41357 AAAATCCGTGGTGGTGAAGCAGTACATACAGGCGTGATCCCGTTCTGGAAACATATTCAG 41416 || || || |||||||| | ||||| || |||||||||| || || | ||| Sbjct 1562 CCGATTCGCGGCGGTGAAGCTTTCCATACCGGTTGTATCCCGTTCTACAAGCACTTCCAG 1503 Query 41417 ACAGCGGTTAAATCCTGTTCACAAGGTGGCGTTCGTGGTGGTGCTGCAACGTTGTATTAT 41476 |||||||| ||||||||||| || || ||||| ||||| || || || ||| ||| ||| Sbjct 1502 ACAGCGGTGAAATCCTGTTCGCAGGGCGGCGTCCGTGGCGGCGCAGCGACGCTGTTCTAT 1443 Query 41477 CCGATCTGGCATTTGGAAGTTGAAAACCTGCTGGTTCTGAAAAACAACAAAGGTGTTGAG 41536 ||||| |||||| ||||||| |||| |||| | || |||||||||||| ||||| || Sbjct 1442 CCGATGTGGCATCTGGAAGTAGAAAGCCTGTTAGTCCTGAAAAACAACCGTGGTGTGGAA 1383 Query 41537 AATAACCGCATTCGTCACCTGGATTATGGCGTTCAGCTTAACGATTTGATGTATAAGCGT 41596 ||||||| | |||||| |||| || || || ||||| ||| | ||||||| |||| Sbjct 1382 GGTAACCGCGTACGTCACATGGACTACGGTGTGCAGCTCAACAAAATGATGTACCAGCGC 1323 Query 41597 TTAATCAATAACGATTACATCACACTGTTCAGCC---CTGACGTTGCAAATGATCGCCTG 41653 | | || ||| ||||||| ||||| |||| | ||||| | | ||||| Sbjct 1322 CTGCTGAAGGGCGAGGACATCACGCTGTTTAGCCCGTCAGACGTACC------TGGCCTG 1269 Query 41654 TATGATGCTTTCTATCAAGCTGATCAGACTGAGTTCGAAGAACTCTATACCAGTTTGGAA 41713 || ||||| |||| | || |||||| || || ||| || || |||| | ||| Sbjct 1268 TACGATGCGTTCTTT---GCCGATCAGGACGAATTTGAACGTCTTTACACCAAATACGAA 1212 Query 41714 AAAGACCCAACGGTACGCAAGAAACGCATTAAAGCAGCAGACTTATTCCAGTTGCTTGTT 41773 ||||| | | || ||| | || | ||||| | ||| | ||| | || | | Sbjct 1211 CAAGACAGCAGCATTCGTAAGCAGCGTGTGAAAGCGGTAGATCTGTTCTCGCTGATGATG 1152 Query 41774 CAGGAACGCGCACAGACCGGACGCA 41798 ||||||||||| ||||| |||| Sbjct 1151 CAGGAACGCGCCTCTACCGGCCGCA 1127 >seq33108 Length=3479 Score = 170 bits (188), Expect = 2e-37 Identities = 145/179 (81%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 51018 GTTGAAGGTGGACAGCACCTAAACGTGAATGTGCTACGTCGCGAAACCCTGAAAGATGCT 51077 || ||||| || |||||| ||||||| || || || || || ||||| ||| |||| || Sbjct 2783 GTGGAAGGCGGGCAGCACTTAAACGTTAACGTCCTGCGCCGTGAAACGCTGGAAGACGCC 2842 Query 51078 GTGAAACATCCTGAGAAGTACCCACAGTTAACGATCCGCGTTTCAGGTTATGCAGTTCGC 51137 |||||||||||||||||||| || ||| | || || || ||||| || ||||| || ||| Sbjct 2843 GTGAAACATCCTGAGAAGTATCCGCAGCTGACCATTCGTGTTTCCGGGTATGCCGTGCGC 2902 Query 51138 TTTAATGCACTGACTCCAGAACAACAGCGCGACGTTATCGCCAGAACCTTTACGGAAAG 51196 |||||| | ||||| || ||||||||||| ||||| || ||| | |||||||||||||| Sbjct 2903 TTTAATTCGCTGACGCCTGAACAACAGCGTGACGTCATTGCCCGTACCTTTACGGAAAG 2961 >seq62284 Length=976 Score = 131 bits (144), Expect = 2e-25 Identities = 250/359 (70%), Gaps = 12/359 (3%) Strand=Plus/Minus Query 41177 TTACCTACGCCTATTATGGCTGGTGTGCGTACTCCTACGCGTCAGTTTTCCAGTT---GC 41233 ||||| || ||||||||||||||| | ||||| ||| ||||| || ||||| | Sbjct 486 TTACCAACACCTATTATGGCTGGTTTACGTACAAATACTCGTCAATT---CAGTTCTTGT 430 Query 41234 GTAGTGATTGAATC-AGGTGATTCCCTGGGTTCTCTGAATGCTGTAACCTCTGCGATCGT 41292 || || || |||| ||| || ||| | | | | ||||| | ||||| ||| | Sbjct 429 GTTGTAAT-GAATGTAGGAGACAGCCTAGACAGTATTAGTGCTGGTAATTCTGCAATCAT 371 Query 41293 GAAGTATATTTCACAACGTGCTGGTATCGGTGTTAATGCTGGACACATTCGCGCAATGGG 41352 ||| |||||||| | ||||| | ||||| ||| ||| | | |||| ||| | || Sbjct 370 GAAATATATTTCTAAGAAAGCTGGACTAGGTGTAAATTATGGTCGCGTTCGTGCAGTAGG 311 Query 41353 TTCTAAAATCCGTGGTGGTGAAGCAGTACATACAGGCGTGA-TCCCGTTCTGGAAACATA 41411 ||| |||| ||||||||||| ||||| || |||||| ||| ||| ||||| || Sbjct 310 TTCAGAAATTCGTGGTGGTGATGCAGTCCACACAGGCTTGATTCCATTTCTGTCGGCAGT 251 Query 41412 TTCAGACAGCGGTTAAATCCTGTTCACAAGGTGGCGTTCGTGGTGGTGCTGCAACGTTGT 41471 || | | | ||| |||||||||| || ||||| ||||| ||||| || ||||| | Sbjct 250 GGCA-AAAACTGTT-AATCCTGTTCTCAGGGTGGTGTTCGAGGTGGAGCAGCAACTGTAC 193 Query 41472 ATTATCCGATCTGGCATTTGGAAGTTGAAAACCTGCTGGTTCTGAAAAACAACAAAGGT 41530 | | ||| | ||||||| || ||||| | || | || ||| |||| || |||||| Sbjct 192 ACTTTCCACTATGGCATTACGAGTTTGAAGATCTTGTAGTACTG-AAAATAATAAAGGT 135 >seq36028 Length=2231 Score = 100 bits (110), Expect = 3e-16 Identities = 119/159 (75%), Gaps = 2/159 (1%) Strand=Plus/Plus Query 43808 TATATCGAACACTTAACCGACCAACGTATGCGAGCGGTTGGGTTACAGTCT-CCGTTTAA 43866 ||||||||| || | ||| || ||||||| |||||||| | | ||| ||||| | Sbjct 795 TATATCGAATACATCACCAACATTCGTATGCAGGCGGTTGGCCTCGA-TCTGCCGTTCGA 853 Query 43867 ACCGAGTCCTAACCCGTATCCGTGGATGAACAAATGGTTGAAGTCTGACAACGTTCAGGT 43926 | || | | |||||| ||| ||||| ||| ||| || ||| || ||||||||||| Sbjct 854 AACGCGCTCGAACCCGATTCCCTGGATCAACGCCTGGCTGGTGTCCGATAACGTTCAGGT 913 Query 43927 AGCCCCGCAAGAGGTTGAAGTAAGTTCTTACCTGGTTGG 43965 |||||||| || || ||||| |||||||||||||| || Sbjct 914 TGCCCCGCAGGAAGTGGAAGTCAGTTCTTACCTGGTGGG 952 >seq38626 Length=1471 Score = 96.9 bits (106), Expect = 4e-15 Identities = 207/304 (68%), Gaps = 4/304 (1%) Strand=Plus/Plus Query 154263 GAGAACGCGAACAAAGAC-GCAAGGGTTTTCCCGACACAGCGCGATCTGTTGGCGGGTAT 154321 || || || || |||||| |||| | | ||||||| || |||||| || |||| || || Sbjct 640 GAAAATGCCAATAAAGACAGCAAAG-TGATCCCGACCCAACGCGATTTGCTGGCCGGGAT 698 Query 154322 CGTAGCGAAACACTTCGCACGTAACCACATTCTACCAAAACACATCGTAGAAGCGCATGA 154381 || |||||||| | ||| | | || || || || | | || | |||||||| Sbjct 699 TGTGGCGAAACATTACGCCCAGCAGCAAATCCTGCCTCGTGATGTGGTTCAGGCGCATGA 758 Query 154382 TTCTGGTGATATCCATTATCATGATCTGGATTACAGCCCGTTC-ACGCCATACACAAACT 154440 || || ||||||||||| ||||| |||||| || ||| | |||| |||| Sbjct 759 GCGCGGCGAGATCCATTATCACGATCTCGATTACGCGCCTTTCTTCCCCAT-GTTTAACT 817 Query 154441 GCTGTCTGGTGGATTTGAAAGGTATGCTGGCTAATGGCTTCAAGATGGGTAACGCAGACA 154500 || ||| | ||| ||||||| |||||| | || || || || ||||| ||||| || | Sbjct 818 GCATGCTGATCGATCTGAAAGGCATGCTGACCAACGGTTTTAAAATGGGCAACGCGGAGA 877 Query 154501 TCGAACCCCCGAAATCAATCGGTGTTGCGACTGCTCTTATGGCACAGATCACCGCACAGA 154560 |||| || || | || || | | || ||||| | | || || |||| || ||| Sbjct 878 TCGAGCCGCCCAGGTCGATTGCTACCGCCACTGCGGTGACTGCGCAAATCATTGCCCAGG 937 Query 154561 TTGC 154564 |||| Sbjct 938 TTGC 941 >seq34305 Length=2218 Score = 95.1 bits (104), Expect = 1e-14 Identities = 124/172 (72%), Gaps = 0/172 (0%) Strand=Plus/Minus Query 51019 TTGAAGGTGGACAGCACCTAAACGTGAATGTGCTACGTCGCGAAACCCTGAAAGATGCTG 51078 ||||||| || ||||| || || || || ||| | || |||| ||| || || Sbjct 770 TTGAAGGCGGCCAGCATCTGAATGTTAACGTGATGAACCGGGAAATGTTGATGGACGCAA 711 Query 51079 TGAAACATCCTGAGAAGTACCCACAGTTAACGATCCGCGTTTCAGGTTATGCAGTTCGCT 51138 || | | |||||||| || || |||||||| ||||||||||| || ||||| ||||||| Sbjct 710 TGGATAACCCTGAGAAATATCCTCAGTTAACCATCCGCGTTTCGGGCTATGCCGTTCGCT 651 Query 51139 TTAATGCACTGACTCCAGAACAACAGCGCGACGTTATCGCCAGAACCTTTAC 51190 |||| | || || ||| || |||| ||||| || || | |||||||| Sbjct 650 TTAACTCGCTCACCAAAGAGCAGCAGCAGGACGTGATTACCCGTACCTTTAC 599 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 569090781228000