Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20arachidis_20[genbank_20GCA_5F001013415.1_202015-05-26] 130,300 sequences; 87,617,276 total letters Query= NC_025425.1 Length=163424 Score E Sequences producing significant alignments: (Bits) Value seq33108 140 3e-28 seq33499 123 3e-23 seq34305 122 9e-23 >seq33108 Length=3479 Score = 140 bits (154), Expect = 3e-28 Identities = 137/177 (77%), Gaps = 0/177 (0%) Strand=Plus/Minus Query 53990 TTCGGTAAAGGTACGCGCGATAACGTCACGCTGCTGGTCTGGAGTCAGACTATTGAAGCG 54049 ||| ||||||||||| || || ||||||||||| || || || ||||| ||| ||||| Sbjct 2959 TTCCGTAAAGGTACGGGCAATGACGTCACGCTGTTGTTCAGGCGTCAGCGAATTAAAGCG 2900 Query 54050 CACTGCGTAACCAGAAACGCGAATTGTAAGCTGCGGGTACTTCTCAGGATGTTCAACAGC 54109 ||| || || || ||||| ||||| || |||||||| |||||||||||||||| || || Sbjct 2899 CACGGCATACCCGGAAACACGAATGGTCAGCTGCGGATACTTCTCAGGATGTTTCACGGC 2840 Query 54110 GTCCAGCAACATTTCTCGTAACAATACGTTAACATTCAAATGCTGGCCACCTTCGAC 54166 ||| || | |||| || || |||||||| || || ||||| || ||||| || Sbjct 2839 GTCTTCCAGCGTTTCACGGCGCAGGACGTTAACGTTTAAGTGCTGCCCGCCTTCCAC 2783 >seq33499 Length=26748 Score = 123 bits (136), Expect = 3e-23 Identities = 297/443 (67%), Gaps = 10/443 (2%) Strand=Plus/Minus Query 116878 CTCGCGGGGTAAGTGACCTGATAGTCTTTGTTCTGGTTCCTTTCCCGCCTAGCTTAGAAT 116937 |||| || | ||||| | || |||||||||||| |||||| || ||||| || | Sbjct 642 CTCGGGGTGAGAGTGATCGTATCATCTTTGTTCTGGCTCCTTTACCACCTAGTTTTTTGT 583 Query 116938 GCTGTTTACTGTACCCTTTATTAA-TATGCAAC-GGTTTCTTTTCTGGCATTATAAAGCC 116995 |||||||| || || | || || ||| ||||| || ||||| | ||| Sbjct 582 GCTGTTTAGAATAACCACTCGAAACGAT--AACAGGTTTTTTCGGTGGCAGCACTAAGTT 525 Query 116996 TTGTCCGGTCCATAAGCAAGTCTTTTTCGGGTACATATCACGGGCGGCGATATACTCAGG 117055 | ||| ||||| | ||| |||||||| || || ||| | || |||||||| || Sbjct 524 ATTTCCAGTCCAAAGGCAGGTCTTTTTTGGATAAGCATCCCTAGCTTTTATATACTCTGG 465 Query 117056 AAACGTAGGATGTTTATCATCTTCCGGCAAATAACCGCCATATTCCCACGGATGGAACAT 117115 |||| |||||| |||||| || ||||| || ||||| || | ||||| ||||| Sbjct 464 AAACAGAGGATGGATATCATTCATTGGTAAATACCCCCCATACTCGTAGGGATGAAACAT 405 Query 117116 GTAATCAGGCTTACGCCACATACTAGAGATAACGCTTACAGGATTCTCTATCATGTAGGG 117175 | | |||||||| | |||||| | || | || |||||| || ||||| | ||| || Sbjct 404 GAAGTCAGGCTTCCTCCACATCGTTGACAAGACAGATACAGGGTTTTCTATTAGGTATGG 345 Query 117176 A-ACTCCTAGCC--ATTCACCCAAATAAGCGGTTATTTTAGCTGCCCGTACATCATGAAC 117232 | |||| | | ||||||| | ||| || ||||| || |||| | || | | ||| Sbjct 344 ACACTCAAAAACATATTCACCAAGATATGCTGTTATCTTGGCTGTTCTGACCGCTTCAAC 285 Query 117233 TTGAATCAACGGTCCTTGTTCTCGTTTCTTTCGTTCAAAGTGTGCAGCGCCACTAACAGC 117292 ||||| || || || | || |||| |||||| || || ||||| || || Sbjct 284 TTGAAACAGAGGATTTTTTAATCTTTTC---GATTCAAACCAAGCCGCACCACTTACTGC 228 Query 117293 TAAATTGGTACACGGTGGGAATG 117315 | | ||||| ||||| |||| Sbjct 227 CATGTCTGTACATGGTGGAAATG 205 >seq34305 Length=2218 Score = 122 bits (134), Expect = 9e-23 Identities = 138/185 (75%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 53979 AATTAGAGAGATTCGGTAAAGGTACGCGCGATAACGTCACGCTGCTGGTCTGGAGTCAGA 54038 || ||||| || | |||||||||||| | || ||||| ||||||| ||| || || Sbjct 584 AACTAGAGTGACTGGGTAAAGGTACGGGTAATCACGTCCTGCTGCTGCTCTTTGGTGAGC 643 Query 54039 CTATTGAAGCGCACTGCGTAACCAGAAACGCGAATTGTAAGCTGCGGGTACTTCTCAGGA 54098 || ||||| || || || || |||||||| || || | ||| || || |||||||| Sbjct 644 GAGTTAAAGCGAACGGCATAGCCCGAAACGCGGATGGTTAACTGAGGATATTTCTCAGGG 703 Query 54099 TGTTCAACAGCGTCCAGCAACATTTCTCGTAACAATACGTTAACATTCAAATGCTGGCCA 54158 | || | ||||||| ||||||||| || || ||||||||||||| ||||||||| Sbjct 704 TTATCCATTGCGTCCATCAACATTTCCCGGTTCATCACGTTAACATTCAGATGCTGGCCG 763 Query 54159 CCTTC 54163 ||||| Sbjct 764 CCTTC 768 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 521977242592000