Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20arachidis_20[genbank_20GCA_5F001013415.1_202015-05-26] 130,300 sequences; 87,617,276 total letters Query= NC_025429.1 Length=156446 Score E Sequences producing significant alignments: (Bits) Value seq60516 154 1e-32 seq51075 134 1e-26 seq43510 129 6e-25 seq2347 113 5e-20 seq28361 104 2e-17 seq87035 96.9 3e-15 seq79372 93.3 4e-14 >seq60516 Length=573 Score = 154 bits (170), Expect = 1e-32 Identities = 326/479 (68%), Gaps = 37/479 (8%) Strand=Plus/Plus Query 142243 TTCGGTCATCAGATGCGTTTCAATCTGGCTCAAGGCTTTCCTCTTCTCTCCACGAAGAAG 142302 |||||| | |||||||| ||||| ||||| | ||||| || | || |||| |||||| Sbjct 119 TTCGGTTACCAGATGCGCTTCAACCTGGCCGATGGCTTCCCCATCGTCACCACCAAGAAG 178 Query 142303 CTGCATCTGAAGTCGATCATCGTCGAACTCCTGTGGTTCCTCAAAGGCGATACGAACATC 142362 || |||||||| |||||| ||||| ||||||||||| | || ||||| || ||| Sbjct 179 TGCCACCTGAAGTCCATCATCCATGAACTACTGTGGTTCCTGCAGGGTGATACCAATATC 238 Query 142363 AAGTATCTTCACGATCACAACGTCAAGATCTGGGATGAATGGGCTGATGCCAATGGCAAC 142422 ||||| || | || || ||||| |||||||| || ||||| || | || |||||| Sbjct 239 AAGTACCTGAAGGACAACGGCGTCAGCATCTGGGACGAGTGGGCCGACGAGAACGGCAAC 298 Query 142423 CTCGGACCTGTCTACGGCAAGCAGTGGATGTCCTGGACGAACCTCGTTGTCGCTGGAGAT 142482 ||||| || || |||||| | |||||| || | || | | ||| | Sbjct 299 CTCGGCCCGGTATACGGCTACCAGTGG----------CGCAGCTGGCCGGCGCCG----- 343 Query 142483 GACGTCACAGACGAACCGATCGATCAGATCCGC---CGGATCATTACTGACTTGAAGAAG 142539 | | ||| ||||||| |||||| || | |||| | ||| | ||| || Sbjct 344 ------AACGGCGAGTCGATCGACCAGATCAGCAAGCTGATCGAGA-TGA--TCAAG-AG 393 Query 142540 TCTCCTCATTCTCGTCGTCACATCGTCACCGCGTGGAACCCTGCTGAAGTCGACGACATG 142599 || | || || || | |||||| | || ||||| || || || ||||| ||| Sbjct 394 AACCCGGACTCGCGCCGGCTGATCGTCTCGGCCTGGAATCCGGCGCTGGTGGACGAGATG 453 Query 142600 GCACTTCCTCCGTGTCACATGATGTTCCAATTCCACGTCGACTCGAAG--AAGCGTCTGT 142657 || || || ||||| || | ||||||| ||| | |||| ||| | |||| || | Sbjct 454 GCCCTGCCGCCGTGCCATGCGCTGTTCCAGTTCTATGTCG--CCGACGGCAAGC-TCAG- 509 Query 142658 CATGCCAGCTGTATCAGCG-TTCGGCAGACTGGTTCCTCGGCGTTCCGTTCAACATTGC 142715 ||||||||||| ||||| |||| ||| ||||| ||||| ||||||||||| || Sbjct 510 -CTGCCAGCTGTACCAGCGCAGCGGC-GACATTTTCCTGGGCGTGCCGTTCAACATCGC 566 >seq51075 Length=376 Score = 134 bits (148), Expect = 1e-26 Identities = 163/221 (74%), Gaps = 1/221 (0%) Strand=Plus/Plus Query 142241 TCTTCGGTCATCAGATGCGTTTCAATCTGGCTCAAGGCTTTCCTCTTCTCTCCACGAAGA 142300 ||||||| |||||||| ||| | || || |||||||||| | ||| | || |||| Sbjct 52 TCTTCGGCGCGCAGATGCGCTTCGACCTCGCCGAAGGCTTTCCCGTCCTCACGACCAAGA 111 Query 142301 AGCTGCATCTGAAGTCGATCATCGTCGAACTCCTGTGGTTCCTCAAAGGCGATACGAACA 142360 ||||||| ||| |||||| | ||| | ||||||||||| || ||||| || |||| Sbjct 112 AGCTGCACCTGCGCTCGATCGTGCACGAGTTGCTGTGGTTCCTGAAGGGCGAGACCAACA 171 Query 142361 TCAAGTATCTTCACGATCACAACGTCA-AGATCTGGGATGAATGGGCTGATGCCAATGGC 142419 || ||||| | || |||| |||| |||||||| || ||||| ||||| | ||| Sbjct 172 TCGCCTATCTCAAGGACAACAAGGTCAGCCATCTGGGACGAGTGGGCCGATGCGCAGGGC 231 Query 142420 AACCTCGGACCTGTCTACGGCAAGCAGTGGATGTCCTGGAC 142460 | ||||| || || ||||||||||||||| | |||||| Sbjct 232 GAACTCGGCCCGGTGTACGGCAAGCAGTGGCGGCGCTGGAC 272 >seq43510 Length=3912 Score = 129 bits (142), Expect = 6e-25 Identities = 154/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 142252 CAGATGCGTTTCAATCTGGCTCAAGGCTTTCCTCTTCTCTCCACGAAGAAGCTGCATCTG 142311 |||||||||||| | || | ||||| || || || |||| ||||||||||| ||| Sbjct 1121 CAGATGCGTTTCGACCTCAACGACGGCTTCCCCCTGGTCACCACCAAGAAGCTGCACCTG 1062 Query 142312 AAGTCGATCATCGTCGAACTCCTGTGGTTCCTCAAAGGCGATACGAACATCAAGTATCTT 142371 |||||| | ||| | ||||||||||| || ||||| || |||||| ||||| Sbjct 1061 CGCTCGATCGTGCACGAGTTGCTGTGGTTCCTGAAGGGCGAGACCAACATCGCCTATCTC 1002 Query 142372 CACGATCACAACGTCAAGATCTGGGATGAATGGGCTGATGCCAATGGCAACCTCGGACCT 142431 | || |||| |||| |||||||| || ||||| ||||| | ||| | ||||| || Sbjct 1001 AAGGACAACAAGGTCAGCATCTGGGACGAGTGGGCCGATGCGCAGGGCGAACTCGGCCCG 942 Query 142432 GTCTACGGCAAGCAGTGGATGTCCTGGAC 142460 || ||||||||||||||| | |||||| Sbjct 941 GTGTACGGCAAGCAGTGGCGGCGCTGGAC 913 >seq2347 Length=4848 Score = 113 bits (124), Expect = 5e-20 Identities = 323/493 (66%), Gaps = 24/493 (5%) Strand=Plus/Minus Query 142241 TCTTCGGTCATCAGATGCGTTTCAATCTGGCTCAAGGCTTTCCTCTTCTCTCCACGAAGA 142300 ||||||| | |||||| | ||| | ||||| | |||||||| || || |||| |||| Sbjct 2038 TCTTCGGCTACCAGATGAGATTCGACCTGGCCGAGGGCTTTCCCCTGGTCACCACCAAGA 1979 Query 142301 AGCTGCATCTGAAGTCGATCATCGTCGAACTCCTGTGGTTCCTCAAAGGCGATACGAACA 142360 | ||||||| || |||||| |||||| ||||||||||| | ||||| || || | Sbjct 1978 AATGCCATCTGAGATCCATCATCCACGAACTGCTGTGGTTCCTGCAGGGCGAGACCAATA 1919 Query 142361 TCAAGTATCTTCACGATCACAACGTCAAGATCTGGGATGAATGGGCTGATGCCAATGGCA 142420 || || || | || | ||| |||||||| |||||||| || | || || Sbjct 1918 TCCGCTACCTGAAGGACAATGGCGTGTCCATCTGGGACGAATGGGCCGACGAGAACGGTG 1859 Query 142421 ACCTCGGACCTGTCTACGGCAAGCAGTGGATGTCCTGGACGAACCTCGTTGTCGCTGGAG 142480 | || ||||| ||||||||| | |||||| |||| || | || || Sbjct 1858 AGCTGGGACCGGTCTACGGCTACCAGTGGCGCAGCTGGCCGGCACCCGATG--------- 1808 Query 142481 ATGACGTCACAGACGAACCGATCGATCAGATCCGCCGGATCATTACTGACTTGAAGAAGT 142540 | || || | ||| | ||||| | | | ||| ||| | | ||| Sbjct 1807 --GTCGCCATA-TCGACCAGATCG--CCGGGGTGGTGGA-CATGATCCGCGCCAAG---- 1758 Query 142541 CTCCTCATTCTCGTCGTCACATCGTCACCGCGTGGAACCCTGCTGAAGTCGACGACATGG 142600 || | || || || | |||||| | || ||||| || || || ||||| |||| Sbjct 1757 --CCCGACTCGCGGCGCCTGATCGTCTCGGCCTGGAATCCGGCCCTGGTGGACGAGATGG 1700 Query 142601 CACTTCCTCCGTGTCACATGATGTTCCAATTCCACGTCGACTCGAAGAAGCGTCTGTCAT 142660 | || || ||||| || | ||||||| ||| | |||| ||| | || ||| | Sbjct 1699 CGCTGCCGCCGTGCCATGCGCTGTTCCAGTTCTATGTCG--CCGATG-GTCGCCTGAGCT 1643 Query 142661 GCCAGCTGTATCAGCGTTCGGCAGACTGGTTCCTCGGCGTTCCGTTCAACATTGCTTCGT 142720 |||||||||||||||| || || ||| ||||||||||| || |||||||| || | Sbjct 1642 GCCAGCTGTATCAGCGCTCCGCCGACATCTTCCTCGGCGTGCCCTTCAACATCGCCAGCT 1583 Query 142721 ACGCGCTTCTCAC 142733 | ||||| || || Sbjct 1582 ATGCGCTGCTGAC 1570 >seq28361 Length=3781 Score = 104 bits (114), Expect = 2e-17 Identities = 150/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 142238 CAATCTTCGGTCATCAGATGCGTTTCAATCTGGCTCAAGGCTTTCCTCTTCTCTCCACGA 142297 |||| || ||||| ||||||||||| |||||| | |||||||| || || | || | Sbjct 2650 CAATTTTTGGTCACCAGATGCGTTTTAATCTGCAGGATGGCTTTCCCCTGGTCACGACTA 2591 Query 142298 AGAAGCTGCATCTGAAGTCGATCATCGTCGAACTCCTGTGGTTCCTCAAAGGCGATACGA 142357 | ||| ||| | || ||||| || || |||||||| || |||| || || | Sbjct 2590 AAAAGTGCCATGTTCGCTCCATCATTCATGAGCTGCTGTGGTTTCTGCAAGGGGACACCA 2531 Query 142358 ACATCAAGTATCTTCACGATCACAACGTCAAGATCTGGGATGAATGGGCTGATGCCAATG 142417 |||| || || | || |||| ||| ||||||||||| ||||| |||| | | Sbjct 2530 ACATTGGTTACCTGAAAGAAAACAATGTCTCTATCTGGGATGAGTGGGCAGATGAGCAGG 2471 Query 142418 GCAACCTCGGACCTGTCTACGGCAAGCAGTGG 142449 |||| || ||||| || |||||||| |||||| Sbjct 2470 GCAATCTGGGACCGGTATACGGCAAACAGTGG 2439 >seq87035 Length=572 Score = 96.9 bits (106), Expect = 3e-15 Identities = 127/173 (73%), Gaps = 6/173 (3%) Strand=Plus/Plus Query 19246 GGTTCTCGTGATCGACAAGCGTGACCACCTCGCTGGAAACGCTTACACCGAACGCAA--- 19302 ||| || || |||||| || ||||| ||| || ||||| |||| ||| ||| | Sbjct 36 GGTGCTGGTCATCGACCGTCGCCACCACATCGG-GGCAACGCCTACAGCGAGCGCGACCC 94 Query 19303 -GA-ACGGCATCGACGTCCACAAGTACGGTGCACACATCTTCCACACTCCGAACAAGGAG 19360 || || | |||| || ||||||||||| || ||| |||||||||| | ||| || | Sbjct 95 CGAGACCACGTCGAGGTGCACAAGTACGGCGCCCACCTCTTCCACACCTCCAACGAGCGG 154 Query 19361 ATCTGGGACTACGTCAACACGTTCGGCTACTTCAATGACTATCGTCACAAGGT 19413 ||||||| |||| |||| |||| | |||||| |||||| || |||||||| Sbjct 155 GTCTGGGAGTACGCCAACCGGTTCACCGACTTCACTGACTACCGCCACAAGGT 207 >seq79372 Length=680 Score = 93.3 bits (102), Expect = 4e-14 Identities = 185/269 (69%), Gaps = 10/269 (4%) Strand=Plus/Plus Query 19244 AAGGTTCTCGTGATCGACAAGCGTGACCACCTCGCTGGAAACGCTTACAC------CGAA 19297 ||||| || || |||||| || |||||| ||| || ||||| ||| | ||| Sbjct 229 AAGGTCCTGGTCATCGACCGCCGCGACCACATCGGCGGCAACGCGTACTCGGAGGCCGAG 288 Query 19298 CGCAAGAACGGCATCGACGTCCACAAGTACGGTGCACACATCTTCCACACTCCGAACAAG 19357 | | ||| ||||||||| || ||| |||| || ||| |||||||||| | |||||| Sbjct 289 CCCGAGACCGGCATCGAGGTGCACCGCTACGC-GCCCACCTCTTCCACACCTCCAACAAG 347 Query 19358 GAGATCTGGGACTACGTCAACACGTTCGGCTACTTCAATGACTATCGT-CACAAGGTTCT 19416 | ||||||||||||||||| |||| | |||||| | ||| ||| ||| ||| | Sbjct 348 CGGGTCTGGGACTACGTCAACCAGTTCACCGACTTCACCGGCTA-CGTGCACCGGGTCTT 406 Query 19417 TGCAAACAGCGGAGGAAAGATCTATTCTCTTCCGTTCACTCTGAAGACGATGTCCGAGAT 19476 | | | || || |||| ||| || || ||| | | ||| ||| || |||| | Sbjct 407 CTCGATCCACGACGGCAAGACCTACTCGCTGCCGATGAACCTGGCCACGCTGGGCGAGTT 466 Query 19477 CTTCGAGCGTGGCTTCGAACCACACCAAG 19505 ||||| || ||||| | || |||| || Sbjct 467 CTTCGGTCGCAGCTTC-ACCCCCACCGAG 494 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499684011928000