Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20arachidis_20[genbank_20GCA_5F001013415.1_202015-05-26] 130,300 sequences; 87,617,276 total letters Query= NC_025430.1 Length=42351 Score E Sequences producing significant alignments: (Bits) Value seq69190 425 1e-114 seq105218 421 2e-113 seq37600 152 1e-32 seq83571 143 7e-30 seq16638 127 6e-25 seq75476 123 7e-24 seq29027 95.1 3e-15 seq40890 87.8 5e-13 >seq69190 Length=479 Score = 425 bits (470), Expect = 1e-114 Identities = 386/481 (80%), Gaps = 8/481 (2%) Strand=Plus/Plus Query 20596 GGACTGACCAGGTGGGCGTTGTTGAATCCGTCAGCATTGACGCTGACCGCCGGGGGCGGG 20655 ||||||||||||| ||||| |||||||||| | ||| ||||| || |||||||| || Sbjct 1 GGACTGACCAGGTTGGCGTCATTGAATCCGTGACCATCGACGCAGATCGCCGGGGC--GG 58 Query 20656 CTGTGGTGCGCTTTGGCCGAAGTGCACGCGCTGACGAGATTTTCCAGGACATCGTTGACG 20715 |||||||||||||||| |||| || || || || ||||||||| | ||||||||||||| Sbjct 59 CTGTGGTGCGCTTTGGAAGAAGCGCGCGTGCCGATGAGATTTTCAACGACATCGTTGACG 118 Query 20716 GCATTCGCAAGCATGTTTCCGTTGGCTACCGCGTGTTAGCGGCCAAGCTACAGGAAACGC 20775 | ||||| ||||| ||||| ||||| |||||||||||||||||||| || ||||||| Sbjct 119 GAATTCGGAAGCACGTTTCTGTTGGTTACCGCGTGTTAGCGGCCAAACTGACTGAAACGC 178 Query 20776 GTGACGAGTGGCAGGATGTCTACCGCATCACTGAATGGGAACCGTTCGAAATTTCAATTG 20835 | ||||| |||||||| || ||||| || ||||| |||||||| | ||||||||| || | Sbjct 179 GCGACGAATGGCAGGACGTTTACCGGATTACTGATTGGGAACCTTACGAAATTTCCATCG 238 Query 20836 TGAGCGTTCCCGCTGACACCAGCGTTGGCATTGGGCGTGCGTTTGACAAACCCCAAGAAG 20895 |||||||||| ||||||| ||||||||||||||||||| ||||||| |||||||||| Sbjct 239 TGAGCGTTCCGGCTGACAGCAGCGTTGGCATTGGGCGTCATCTTGACAACCCCCAAGAAG 298 Query 20896 AACAACGCGGCATCAAATCCGATACTGCGGGCACCGTAGAGGTTCCAGCACCaaaaa-aa 20954 |||||||||| ||| |||||||||| ||||| |||| ||||| |||||||||| | Sbjct 299 AACAACGCGGAGCTAAACCCGATACTGCTGGCACATTAGACGTTCCGGCACCAAAAATTA 358 Query 20955 TCATT--TGAGGATTCACG-AATGTTAGAA--AAAATTCTGCGCGACGCTGCCGGTAACC 21009 | || ||||||| || ||| | | | || || |||| || || | ||||||| Sbjct 359 TTGTTTCTGAGGATAATCGAAATATGAATATTAAGGTTTTGCGTGATGCATCAGGTAACC 418 Query 21010 TGGTGCGCGCGATGGTAGACGAGAAAGGCAACATCACGCAGGTTCTGGAAATGCTGGAAC 21069 |||||||||| || ||||| | || |||||||| | ||||||||| ||||||||| Sbjct 419 TGGTGCGCGCCGAAGTTGACGAAAGCGGTAACATCACCAAAGTTCTGGAAGTGCTGGAAC 478 Query 21070 G 21070 | Sbjct 479 G 479 >seq105218 Length=700 Score = 421 bits (466), Expect = 2e-113 Identities = 383/477 (80%), Gaps = 7/477 (1%) Strand=Plus/Minus Query 24969 GTCACTCTGGACACGCCTGACACGTTTTGCACCGGCAACCTGACCGTGGCCAAAAGTTTC 25028 ||||| | ||||| ||||| || | ||| ||||||||||||||||| |||||||| Sbjct 476 GTCACCATTGACACACCTGAAACAATGGTCACTGGCAACCTGACCGTGGCGCAAAGTTTC 417 Query 25029 CAGATGGGAAGCGAAGGCGGAACGGCTACGATGACTGGTAACGTGGCGATTGAAGGCGGA 25088 |||||| |||||||| | || || |||| || || ||||| ||||||||||| Sbjct 416 ACGATGGGCCAGGAAGGCGGCAGCGCCACCATGAAAGGCAATGTGGCCATTGAAGGCGGT 357 Query 25089 AGCCTGACACACAACGGCAAAAACATTGGCAGCAACCATGCTCACAGCGGCGTGCAGTCT 25148 |||||||| ||||||||||||||||||||||||| || |||||||| || |||||| Sbjct 356 AGCCTGACGCACAACGGCAAAAACATTGGCAGCACGCACCTGCACAGCGGTGTTCAGTCT 297 Query 25149 GGTGGCAGCAACACCGGCG-CACCGGTGTGACCTGACAAACCCCAAGAA--GATAAACC- 25204 || || |||||| || | |||| || | | ||||||| ||||||| | ||||| || Sbjct 296 GGCGG-AGCAACGACGCAGGCACCTGTCTAATCTGACAACCCCCAAGCAAGGATAAGCCC 238 Query 25205 -ATCACCC-ATGCGGGCATCATTGCCCGCATGAAAGGAACAAACGCGGCCACAGGCGCGC 25262 | ||||| |||||||||||||||||||||||||||| || || ||||| |||||||||| Sbjct 237 GACCACCCGATGCGGGCATCATTGCCCGCATGAAAGGTACGAATGCGGCAACAGGCGCGC 178 Query 25263 CGCTGGATGGTTTAGACCATCTGCGCCAATCCATAAGAGACATACTCACGACGCCAATTG 25322 |||||||||| | |||||||||||||| || ||| | ||||||||||| ||||||| | Sbjct 177 CGCTGGATGGCATCGACCATCTGCGCCAGTCAATACGCGACATACTCACTACGCCAACCG 118 Query 25323 GCACGCGAGTGATGCGCCGCGACTACGGCAGCCGGTTGCCCTACCTGGTTGATGCACCGA 25382 ||||||||||||||||||||||||| |||||||| |||||| |||||| || || || | Sbjct 117 GCACGCGAGTGATGCGCCGCGACTATGGCAGCCGACTGCCCTCCCTGGTGGACGCGCCAA 58 Query 25383 TGAACCGCAGCACGCTGCTGGACCTGTACGCAGCGACTGCGGAAGCACTGGAAGCCT 25439 |||||||| ||||||||||| | ||||| || || | ||||| |||||| ||| Sbjct 57 TGAACCGCGAAACGCTGCTGGATATTTACGCTGCCACCGTTGAAGCGCTGGAAACCT 1 >seq37600 Length=3447 Score = 152 bits (168), Expect = 1e-32 Identities = 242/339 (71%), Gaps = 11/339 (3%) Strand=Plus/Minus Query 39471 TCCGCGACGTGGACCAGGCGCACGTTGAAGAATTCCGCGATGCGTACCTGGCCGGTGAAT 39530 ||||||| | |||||| | ||||||||||||||||| ||||||| | || ||||| Sbjct 3446 TCCGCGAGATTGACCAGACCCACGTTGAAGAATTCCGTGATGCGTTTATCGCGGGTGAGC 3387 Query 39531 ATGTGCCGCCGCTGACCGTGGAAGTGACGCAGCAGGGCATCAAGGTGATTGATGGCCACC 39590 ||||||| |||||| |||| | || || |||| || |||||||| || || ||||| | Sbjct 3386 ATGTGCCACCGCTGGCCGTTCAGGTCACTGAGCATGGAATCAAGGTTATCGACGGCCATC 3327 Query 39591 ACCGCTTTGCCGGTGCAAAGATGGCCGCAGAAACCGG-CCTGGAACTGCGCCTGGAAGTG 39649 |||| | ||| || ||| ||| | ||| || ||| || || |||| || | |||| Sbjct 3326 ACCGTTACTTCGGCGCGAAGCTGG-CACAGGAAGCGGACCACGAGTTGCGTCTTG-AGTG 3269 Query 39650 -AACGACATCACCGGCACCAGTGAGGCTGACAAAATCGCGCTGATGGTCACCAGCAGCCA 39708 || ||| || || |||||| || ||| ||||| | ||||| || |||||||| Sbjct 3268 CAAAGACTTCGTAGG---CAGTGAAGCAGACCGCATCGCTTTCATGGTGACAAGCAGCCA 3212 Query 39709 GGGCAAGCCGCTGGAACCGCTGGAACGCGCCAAAGCCTATTCGCGCCTGAAAGCGCAGGG 39768 |||| | || | |||||||| || ||| ||||||| ||| ||| ||||| Sbjct 3211 AGGCAGGGCGTTACTCCCGCTGGAGCGTGCCGCAGCCTATCAGCGTCTGGTTAATCAGGG 3152 Query 39769 CTGG--ACCAATGACGAGATAGCCAAGAAGGTGAAGCGC 39805 ||| ||| | |||||||| |||||||| |||||| Sbjct 3151 TTGGGAACC--GGCAGAGATAGCGAAGAAGGTTAAGCGC 3115 >seq83571 Length=553 Score = 143 bits (158), Expect = 7e-30 Identities = 226/318 (71%), Gaps = 8/318 (3%) Strand=Plus/Minus Query 22380 ACATGGCCGCTTCGGCGGCCATAGTCTTATCTGACAGGAGAAGTTTTTATGTCTGGTACT 22439 ||| |||||||| ||||||| | | || | | |||| | |||||| | |||| | Sbjct 504 ACAGGGCCGCTTAGGCGGCCCTTATTCCAT-TAAATGGAGTGATATTTATGACCGGTA-T 447 Query 22440 TATGTACTGAAATTGACTTCCGCTATTGCTATCAGCGGCGAAGTCATGAAAGCGGGTTCA 22499 || |||||| ||||||| || |||||| | |||||||| ||||||||||||||| Sbjct 446 TACACCCTGAAACTGACTTCTGCCATTGCTGTTGAGGGCGAAGTGATGAAAGCGGGTTCA 387 Query 22500 CTGGTTGAGGTTTCAGAGCTTGAGGCTAAAAACCTGTTGTCGCGCGGCAAGGCAGAGATG 22559 | ||||||||||| || | || || ||||||||| |||| |||||||| || || || Sbjct 386 ATCGTTGAGGTTTCGGAAATCGAAGCCAAAAACCTGCTGTCACGCGGCAAAGCCGAACTG 327 Query 22560 CACGACGAACAACCAGCACGTGATGACGATGTTGAAATCACGAAAATGAACAAAGATCAG 22619 |||| |||||| | || || | || || | || | ||||||||| | Sbjct 326 CACGGCGAACAGGCCGC-CG-CACCGCG----CGACCTGACCGCACTGAACAAAGCCGAA 273 Query 22620 CTTATCGCTATTGCAGAGCAGATGGAAATTGAAGGCGCTGACAAGATGACCAAAGCGCAG 22679 || | | | ||||||||| || | || | | |||||||||||||||||| ||| Sbjct 272 CTGCTTGAACTGGCAGAGCAGTTGCAGATCACCGTCAATGACAAGATGACCAAAGCACAG 213 Query 22680 TTGATTGAAGCCATCGAA 22697 ||| | |||||||||||| Sbjct 212 TTGCTGGAAGCCATCGAA 195 Score = 107 bits (118), Expect = 5e-19 Identities = 80/89 (90%), Gaps = 6/89 (7%) Strand=Plus/Minus Query 23084 TAATGCCCGCGCCGTCCTGGGAAAACCTGGACGACTTTTTT--GACCTTGACACCAACGG 23141 ||||||| ||||||||||||||||||||||||||||||||| ||| ||| ||||||| Sbjct 86 TAATGCCAGCGCCGTCCTGGGAAAACCTGGACGACTTTTTTACGAC--TGATACCAACG- 30 Query 23142 CGGGTTTGCATTTCCC-GCCGTTATTCAT 23169 |||||||||| ||||| |||||||||||| Sbjct 29 CGGGTTTGCAATTCCCCGCCGTTATTCAT 1 >seq16638 Length=4153 Score = 127 bits (140), Expect = 6e-25 Identities = 151/205 (74%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 217 GCCATTCATGCCCACCACGATTTCAGTTGTGTAGCGATCAACGCCAGCCTGGTCCTGCCA 276 ||| || ||| | ||||||||||| || ||||||||||| || ||||| ||||||| Sbjct 3949 GCCGTTGATGTCGACCACGATTTCGGTGGTGTAGCGATCCTGACCGTCCTGGCCCTGCCA 4008 Query 277 CTTGCGCGTTTGCAGCGCGCCTTCAATGAACACCTTGCTGCCTTTGCGCAGGTACTGGCT 336 ||||| || |||| | ||| || | | |||| | ||| ||||| | ||||| || Sbjct 4009 TTTGCGGGTACGCAGAGTGCCCTCGACATAGACCTGGGAGCCCTTGCGGATGTACTCGCC 4068 Query 337 GGCGATTTCTGCCAGCTTTCCGAAGATGACCACGCGGTGCCATTCCGTTTTTTCTTTCTT 396 |||||| || || || ||||||| ||||||||||||||||| || || | || Sbjct 4069 GGCGATCTCGGCGAGACGACCGAAGAACACCACGCGGTGCCATTCGGTGCGGTCCTGCTG 4128 Query 397 CTCCCCTGTCTGCTTATCCTTCCAG 421 || || |||||||| ||||||||| Sbjct 4129 CTGACCGGTCTGCTTGTCCTTCCAG 4153 >seq75476 Length=556 Score = 123 bits (136), Expect = 7e-24 Identities = 111/136 (82%), Gaps = 4/136 (3%) Strand=Plus/Plus Query 5987 TAACAAACAAT-GCCCGGTGCGC--CGGGCAGTTCTCA-CAGGTGACACCATGAAAAAAC 6042 |||||| ||| |||||| | | ||||| |||||| |||||||||| ||||||||| Sbjct 190 TAACAACCAACCGCCCGGATCACTCCGGGCTTTTCTCAACAGGTGACACGATGAAAAAAA 249 Query 6043 TTATCATCGCCGCTTTCATCCTGGCGGCCACCAGCGTCACTGCACAGGCGCGCGAATGTC 6102 | | |||||||| ||||||||| |||||||| |||| |||||||| |||||||| | Sbjct 250 TACTTATCGCCGCAGCCATCCTGGCAGCCACCAGTTTCACAGCACAGGCACGCGAATGCC 309 Query 6103 TGCCAGGCATGGACCC 6118 |||||||||||||||| Sbjct 310 TGCCAGGCATGGACCC 325 >seq29027 Length=2418 Score = 95.1 bits (104), Expect = 3e-15 Identities = 124/172 (72%), Gaps = 0/172 (0%) Strand=Plus/Plus Query 264 CCTGGTCCTGCCACTTGCGCGTTTGCAGCGCGCCTTCAATGAACACCTTGCTGCCTTTGC 323 |||| |||||||| || || || ||||| ||||||||| |||||| ||||| | Sbjct 895 CCTGATCCTGCCATTTACGGGTGCGCAGCTGGCCTTCAATATACACCTGAGAACCTTTAC 954 Query 324 GCAGGTACTGGCTGGCGATTTCTGCCAGCTTTCCGAAGATGACCACGCGGTGCCATTCCG 383 ||||||| | | || | ||| ||||| || || || | || || ||||||||||| | Sbjct 955 GCAGGTATTCCCCCGCCACTTCCGCCAGTTTGCCAAACAGCACGACACGGTGCCATTCGG 1014 Query 384 TTTTTTCTTTCTTCTCCCCTGTCTGCTTATCCTTCCAGGTTTCAGACGTGGC 435 | | ||||| || || || |||||||| || |||| | ||||| || || Sbjct 1015 TGATCTCTTTGTTTTCACCGGTCTGCTTGTCGCGCCAGCTCTCAGAGGTAGC 1066 >seq40890 Length=365 Score = 87.8 bits (96), Expect = 5e-13 Identities = 75/93 (81%), Gaps = 0/93 (0%) Strand=Plus/Plus Query 292 CGCGCCTTCAATGAACACCTTGCTGCCTTTGCGCAGGTACTGGCTGGCGATTTCTGCCAG 351 || |||||| | | | ||| |||||||||||||||||||| || |||||| || | || Sbjct 9 CGAGCCTTCGACGTAGACCGAGCTGCCTTTGCGCAGGTACTCGCCGGCGATCTCGCCAAG 68 Query 352 CTTTCCGAAGATGACCACGCGGTGCCATTCCGT 384 ||||||||||| || ||||||||||| || || Sbjct 69 CTTTCCGAAGAACACGACGCGGTGCCACTCGGT 101 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 135192091411800