Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20arachidis_20[genbank_20GCA_5F001013415.1_202015-05-26] 130,300 sequences; 87,617,276 total letters Query= NC_025437.1 Length=169062 Score E Sequences producing significant alignments: (Bits) Value seq33108 187 3e-42 seq49372 152 6e-32 seq72596 116 4e-21 seq31280 116 4e-21 seq49234 111 2e-19 seq34305 105 7e-18 seq50823 104 3e-17 seq107223 82.4 8e-11 >seq33108 Length=3479 Score = 187 bits (206), Expect = 3e-42 Identities = 151/183 (83%), Gaps = 0/183 (0%) Strand=Plus/Minus Query 62329 TTATAGACTCTCAGTAAAGGTACGAGCGATAACGTCACGCTGCTGTTCCGGAGTCAGAGA 62388 ||||| ||| || ||||||||||| || || ||||||||||| ||||| || ||||| || Sbjct 2968 TTATAAACTTTCCGTAAAGGTACGGGCAATGACGTCACGCTGTTGTTCAGGCGTCAGCGA 2909 Query 62389 GTTAAAGCGAACTGCATAACCGGATACACGGATGGTCAACTGCGGATATTTTTCTGGATG 62448 |||||||| || ||||| ||||| ||||| ||||||| ||||||||| || || ||||| Sbjct 2908 ATTAAAGCGCACGGCATACCCGGAAACACGAATGGTCAGCTGCGGATACTTCTCAGGATG 2849 Query 62449 CTTAACTGCATCTTCCAGAGTTTCACGACGCAGAACGTTAACGTTCAGGTGTTGACCACC 62508 || || || |||||||| |||||||| ||||| ||||||||||| | ||| || || || Sbjct 2848 TTTCACGGCGTCTTCCAGCGTTTCACGGCGCAGGACGTTAACGTTTAAGTGCTGCCCGCC 2789 Query 62509 TTC 62511 ||| Sbjct 2788 TTC 2786 >seq49372 Length=1062 Score = 152 bits (168), Expect = 6e-32 Identities = 251/360 (70%), Gaps = 8/360 (2%) Strand=Plus/Plus Query 67827 TTTTGTTTAAAACGTTTTACATAATCGTCATGTCCTAAGCTTTGGTACATACTTACAACT 67886 |||| ||| |||||||| | |||||| || | || || | | |||||| | || ||| Sbjct 280 TTTTCTTTGAAACGTTTAATATAATCATCTTCGCCAAATTTACGATACATATTAACTACT 339 Query 67887 TTGCTGTAGTTTTCCCAAGCGTATTCACGGAACCAGCCTGACGTGATTGAAGTACAGACT 67946 | | | || ||||||| |||| | ||||| |||||||| || | |||| ||| Sbjct 340 GTATTAAAATTCTCCCAAGAAAATTCTCTAAACCATCCTGACGTAATACTACTACACACT 399 Query 67947 TTTTCTAATGCCATCATAAAACTATCACGTGGATGGATTTCAAAGTTATTAGGAATCTGA 68006 || |||| || | |||||||| | ||| |||| |||||||| |||||||| || || Sbjct 400 TTAACTAAAGCAGTAATAAAACTCTGACGAGGATCAATTTCAAAATTATTAGGGATTTGT 459 Query 68007 GAACGTTCTAACGCTAGTACACATGATTCTTCGTATACGCCGGCTAATTTGAC--CAT-- 68062 ||||||||||| || || ||||||| |||||| ||||| || |||||| || ||| Sbjct 460 GAACGTTCTAATGCAAGAACACATGTTTCTTCATATACACCCAATAATTTAACTTCATCG 519 Query 68063 TTCTGGTAATGATTCGAACTTCTCGCGTGAGGTCATGACTTCAGAACCATCTTTCATATA 68122 |||| || |||||| || ||||| || || | ||| || ||||| Sbjct 520 CTCTG----TGCAAAGAACTTTTCTTTACTTGTCATAACGTCTGCACCTTCCACAATATA 575 Query 68123 AAACGTATACGCTGGACGGTCTGTTAGTGCAATGGCTTCGTGAATAGTATCATGGTCATA 68182 | |||| || || ||| || | || |||||||||||||||||||||||||| Sbjct 576 GTTCATATATGCAGGTTTGTCAAGTACTTTTATCGCTTCGTGAATAGTATCATGGTCATA 635 >seq72596 Length=790 Score = 116 bits (128), Expect = 4e-21 Identities = 182/257 (71%), Gaps = 10/257 (4%) Strand=Plus/Minus Query 46447 ACACCGAGATTATTACGTCCATCAAGAATTTCATTACCAGTCGAATCTTTCCATACACTC 46506 ||||| | |||| | ||||| | ||||||| ||| | |||||||||| ||| Sbjct 774 ACACCAATATTAAATCTACCATCGAATTTTTCATTTCCATTTTCATCTTTCCATGAACT- 716 Query 46507 AAGAAACTACGGCAACCCATTGGAGAAACTGGAACTGA---AGAACCAGTAATAGCTTTA 46563 |||||| ||| |||||||||||| |||||||| ||| |||| || | |||| Sbjct 715 AAGAAAGAACGACAACCCATTGGACTAACTGGAATTGATTCAGAATGCGTCA---CTTTT 659 Query 46564 TTATTC---TTAACCGAAATAATGTCAGGATACATTCTTTTGCTTGCACATTCTAACGCA 46620 |||||| | ||||| || | || ||||| |||||||| |||| || | || Sbjct 658 TTATTCAAGTCTACCGATATGAAATCTGGATATATTCTTTTAGATGCAGTTTTAATTGCT 599 Query 46621 AGTTGTTTAATATCATAGTTCGGATCATCTTTATAAAGATTAACACCTTCTTTAACAAAC 46680 ||| ||| | |||||| || ||||||| || | |||||| ||||| ||||||| ||| Sbjct 598 TGTTCTTTTAAATCATAATTAGGATCATTTTCTTTAAGATTTACACCATCTTTAAGAAAG 539 Query 46681 ATAACAAGTTTAGGAAA 46697 | | || ||||||||| Sbjct 538 AATATAACTTTAGGAAA 522 >seq31280 Length=10079 Score = 116 bits (128), Expect = 4e-21 Identities = 283/426 (66%), Gaps = 2/426 (0%) Strand=Plus/Plus Query 142382 CCGTAGTCCATATGTCTAATACGGTTTTCATCCACGCCTTTGTTATTTTTCAGAACCAAC 142441 ||||||||||| || | | ||||| | ||||| || ||| |||||||| || ||| Sbjct 1354 CCGTAGTCCATGTGACGTACGCGGTTACCTTCCACACCACGGTTGTTTTTCAGGACTAAC 1413 Query 142442 AGGTTCTCTACTTCTAAGTGCCACATCGGATAATACGCTGTAGCAGCACCACCACGAATA 142501 ||| | |||||||| | |||||||||||||| || || || || || ||||| | Sbjct 1414 AGGCTTTCTACTTCCAGATGCCACATCGGATAGAACAGCGTCGCTGCGCCGCCACGGACG 1473 Query 142502 CCACCTTGAGAACAAGATTTTACTGCAGTTTGGAAATGTTTCCAGAATGGAATAACACCC 142561 || || || ||||| ||||| || || || ||||| || || |||| || ||| ||| Sbjct 1474 CCGCCCTGCGAACAGGATTTCACCGCTGTCTGGAAGTGCTTGTAGAACGGGATACAACCG 1533 Query 142562 GTATGTCGAACTTCACCCATACCAATCTTAGAACCTTCTGCACGAAGCATACCAACGTTG 142621 ||||| | ||||||| | |||| || || || | ||| |||| Sbjct 1534 GTATGGAAAGCTTCACCGCCGCGAATCGGGCTGCCCAGCGCGCGGATACGACCCGCGTTA 1593 Query 142622 ATACCGATACCAGCTCGTTTAGAAATATATTCAATAATTGATGCT-GAAGTTTTGTTAAT 142680 ||||| ||||| || |||| |||| |||| | ||| | ||| || || ||| || Sbjct 1594 ATACCAATACCTGCGCGTTGTGAAACGTATTTCACAATAG-CGCTGGAGGTCGCGTTGAT 1652 Query 142681 AGATTTTAACGAATCACCGGCTTCAATAACTACACAACTAGAGAACTGGCGAGTTGGAGT 142740 || | | || || |||||| | ||||| |||||| || ||||| || Sbjct 1653 GGAATCCAGGCTGTCGCCACATTCAATCAGGACACAGGAGCTGAACTGACGGGTTGGCGT 1712 Query 142741 ACGAGCACCTGCCATAATTGGGGTTGGCAATGAAACTTGATGAGTAGAAACGGCATCATA 142800 ||| | || | ||| ||||| || |||| || | || | || |||| ||||| || Sbjct 1713 ACGCACTCCCGACATGATTGGCGTCGGCAGGGAGATTTTAAACGTGGAAATCGCATCGTA 1772 Query 142801 AAAACG 142806 ||||| Sbjct 1773 GAAACG 1778 >seq49234 Length=879 Score = 111 bits (122), Expect = 2e-19 Identities = 131/176 (74%), Gaps = 1/176 (1%) Strand=Plus/Plus Query 64528 AATGTTACGTGACCTGTGCCTAAGATAAATGTTGGAGAGATTTTAAAATCCTTTACACGT 64587 ||||| || |||||||| ||||| || | || | | |||||||||||| || | ||| Sbjct 375 AATGTAACATGACCTGTACCTAA-ATGTAGGTAGTACTGATTTTAAAATCATTGATTCGT 433 Query 64588 TTACCGTTTTGGACATGTTTACGGACTGCACTAAATACGCGTGGTAATTCACGATACTCA 64647 ||||| ||| || || ||||| || |||| ||||| ||||| |||||||| || ||| Sbjct 434 TTACCAGCTTGTACGTGCTTACGAACAGCACCGAATACACGTGGCAATTCACGGTATTCA 493 Query 64648 GCCATAAGATGTTGATCGGTCAGTTCAGAAACAAGTGTTAAATTGATACGAGTCAT 64703 |||||||||||||| || | | ||| || || | ||||||||| ||||| Sbjct 494 GCCATAAGATGTTGGTCAGCTAATTCTTGTACTGGTACGAGATTGATACGGGTCAT 549 >seq34305 Length=2218 Score = 105 bits (116), Expect = 7e-18 Identities = 127/173 (73%), Gaps = 0/173 (0%) Strand=Plus/Plus Query 62342 GTAAAGGTACGAGCGATAACGTCACGCTGCTGTTCCGGAGTCAGAGAGTTAAAGCGAACT 62401 ||||||||||| | || ||||| ||||||| || || || |||||||||||||| Sbjct 599 GTAAAGGTACGGGTAATCACGTCCTGCTGCTGCTCTTTGGTGAGCGAGTTAAAGCGAACG 658 Query 62402 GCATAACCGGATACACGGATGGTCAACTGCGGATATTTTTCTGGATGCTTAACTGCATCT 62461 ||||| || || || |||||||| ||||| |||||||| || || | | | ||| || Sbjct 659 GCATAGCCCGAAACGCGGATGGTTAACTGAGGATATTTCTCAGGGTTATCCATTGCGTCC 718 Query 62462 TCCAGAGTTTCACGACGCAGAACGTTAACGTTCAGGTGTTGACCACCTTCAAT 62514 || |||| || || |||||||| ||||| || || || |||||||| Sbjct 719 ATCAACATTTCCCGGTTCATCACGTTAACATTCAGATGCTGGCCGCCTTCAAT 771 >seq50823 Length=3276 Score = 104 bits (114), Expect = 3e-17 Identities = 133/182 (73%), Gaps = 1/182 (1%) Strand=Plus/Plus Query 64522 TAAAAGAATGTTACGTGACCTGTGCCTAAGATAAATGTTGGAGAGATTTTAAAATCCTTT 64581 ||||| || || || || ||||| || | ||| | || | ||||||||||| || Sbjct 128 TAAAAAAAGGTAACATGTCCTGTTCCAAGAATATAGCTTTTACTTATTTTAAAATCATTA 187 Query 64582 ACACGTTTACCGTTTTGGACATGTTTACGGACTGCACTAAATACGCGTGGTAATTCACGA 64641 | | ||| || | || ||||| | ||||||| |||||| ||||||||||||||| Sbjct 188 ATAT-TTTCCCAGCATCAACGTGTTTCCTTACTGCACCAAATACACGTGGTAATTCACGA 246 Query 64642 TACTCAGCCATAAGATGTTGATCGGTCAGTTCAGAAACAAGTGTTAAATTGATACGAGTC 64701 || |||||||| ||||||||||||| || ||| ||| | |||||| || |||||| Sbjct 247 TATTCAGCCATCAGATGTTGATCGGCCAATTCCTGAACCGGAACTAAATTTATCCGAGTC 306 Query 64702 AT 64703 || Sbjct 307 AT 308 >seq107223 Length=315 Score = 82.4 bits (90), Expect = 8e-11 Identities = 113/158 (72%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 62345 AAGGTACGAGCGATAACGTCACGCTGCTGTTCCGGAGTCAGAGAGTTAAAGCGAACTGCA 62404 || ||||| ||| || ||| | || || || ||||||| ||||| ||| ||| Sbjct 237 AACGTACGGTTGATCACATCAAGTTGTTGCTCACGAGTCAGTTTAATAAAGTTAACAGCA 178 Query 62405 TAACCGGATACACGGATGGTCAACTGCGGATATTTTTCTGGATGCTTAACTGCATCTTCC 62464 |||||||||||||| |||||||| || ||||| |||||||| |||| | ||||| Sbjct 177 TAACCGGATACACGAATGGTCAATTGTGGATAGTTTTCTGGGTGCTCCATCGCATCCATA 118 Query 62465 AGAGTTTCACGACGCAGAACGTTAACGTTCAGGTGTTG 62502 || ||||||| | ||||| || ||||| || || Sbjct 117 AGTTGTTCACGATCAAACACGTTCACATTCAGATGATG 80 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 539989457336000