Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20arachidis_20[genbank_20GCA_5F001013415.1_202015-05-26] 130,300 sequences; 87,617,276 total letters Query= NC_025439.1 Length=34773 Score E Sequences producing significant alignments: (Bits) Value seq34615 232 1e-56 seq79846 80.6 6e-11 >seq34615 Length=4632 Score = 232 bits (256), Expect = 1e-56 Identities = 658/987 (67%), Gaps = 57/987 (6%) Strand=Plus/Minus Query 531 CATGTTTAGAGCCGTCAAAGGCTCTGAGCTTATCGATAACTGGCACCA---GAAAGCGAT 587 |||||| | ||| ||| |||| ||| || | || ||||||||||| |||| || Sbjct 3249 CATGTTCAAGGCCCGCAAGGGCTTTGACTTTGTGGAGAACTGGCACCATGCGAAA---AT 3193 Query 588 ATGTGACGCACTAGAGCGCGTGGTT-ATTGGCGACTGCAAACGGCTAATCATTAACGTGC 646 || || || || |||||| || || ||||| | || || |||||||||| | | Sbjct 3192 CTGCGAGGCGCTGGAGCGC-TGCTTCATTGGTCAGCATAAGCGATTAATCATTAATATCC 3134 Query 647 CGCCGCGCTCAGGCAAA-ACCGAACTGGCGGTTAAAAACTTTATGGCGTGGGGTATGGGT 705 | ||||||| | |||| ||||| ||||| ||| ||||||||||| ||| | || || Sbjct 3133 CCCCGCGCT-ACTCAAAGACCGAGCTGGCTGTTGTGAACTTTATGGCCTGGTGCATCGGC 3075 Query 706 AACTTTCCTGATTCGGAGTTTATCCACGCCAGTTATTCAAAGCGCCTGGCAGCGGCTAAC 765 |||| ||| || | ||||| ||||||||||| || || ||||| ||||| || |||| Sbjct 3074 AACTATCCCGACTGCGAGTTCATCCACGCCAGCTACTCGAAGCGTCTGGCGGCCAATAAC 3015 Query 766 ACCTACG-CG---GTGCGA--GCCATGATGCAAGATGACACCTACCTAAAGATATTTGAC 819 || ||| || |||| | |||||| | | || | |||| | || | | Sbjct 3014 ACATACAACGCTCGTGCTATTGCCATG-TCCGAGGAG-----TACCAGGCCGTGTTCGGC 2961 Query 820 CACA-CGGCACTGGCGGGCGACTCAAAAGCAAAAGACGAGTTTAGAACCGC-ACAGGGGG 877 | | ||||| || | |||| | || || || || || | | || || || || || Sbjct 2960 GATATCGGCA-TGATGCACGACGCTAAGGCCAAGGATGAATGGCGCACTGCTACCGGCGG 2902 Query 878 GTATCGTGTATGCTACGGGTGCAGACGGTACTATCACCGGATTCGGCGCAGGTAAGATGC 937 | | | ||||| || || | || || || ||||| || | ||||||||| ||| | | Sbjct 2901 CTG-CATCTATGCGACCGGCTCTGAGGGCACAATCACGGGCTACGGCGCAGGAAAGCTCC 2843 Query 938 GCGACACGTTCGGTGGTGCAATCATAATCGATGACCCGCACAAAGCCGGAGAAGCGAACA 997 || | |||||||| ||||||||||| |||||||| ||||| ||| | || || ||| Sbjct 2842 GCTCCGGATTCGGTGGAGCAATCATAATTGATGACCCCCACAAGGCCAGCGAGGCAAACT 2783 Query 998 GCGCGGTTATGCGGCAGAACGTGATTGATTGGTTCCAGAACACAATGGAGAGCCGCAAAA 1057 || |||||| | ||||| || || |||||||||| ||| ||||| || | Sbjct 2782 CCGACACTATGCGTCGCAACGTCATCGACTGGTTCCAGACCACCATGGAATCGCGACTGA 2723 Query 1058 ACTCGCCTGATACGCCGATTATCATCATCATGCAGCGCCTACACGAAAACGACCTGTCAG 1117 || ||||| ||||| || ||| |||||||||||||||| |||||| | |||||| | | Sbjct 2722 ACAGTCCTGACACGCCCATCATCGTCATCATGCAGCGCCTGCACGAAGAAGACCTGGCTG 2663 Query 1118 GATTTTTGCTTGATGGGGGCAACGGCGAGAATTGGGAGCATTTGTGCATTGCCGCACTGG 1177 | | || || ||| |||||||| ||| | ||| || | |||| | | ||| Sbjct 2662 GCTGGCTGGCTGCTGGCGGCAACGGAGAGGAGTGGAAGGTAGTCAGCATCCCTGTGCTGA 2603 Query 1178 ACGAGCAAGACGAATCGTTTTGGCC---TAAGCAATTCAAGACCGAGGATTTGCACCGTC 1234 ||||||| || || || | ||||| ||||| | || | |||| | || | | Sbjct 2602 ACGAGCATGATGAGGCGCTGTGGCCCTTTAAGC-ACTCTCG--CGAGAAGCTG-TCTGAG 2547 Query 1235 AACG-CGCCAGCAACTCTTATGTGTTTGCCGGGCAGATGATGCAGACACCCGCACCCGCT 1293 | | ||||||||| | || || || ||||| ||| ||||| ||| ||||| Sbjct 2546 ATGGAAGCCAGCAACCCATACGTATTCGCCGGCCAGTACCTGCAGCGACCAGCACCGAAA 2487 Query 1294 GGAGGTGGTATATTCAAATCAAGCTGGTGG-----------CGATACTATCGGGCACTGC 1342 || || || | |||||| ||||||| || ||| | | ||| | Sbjct 2486 GGTGGCGGCCTGTTCAAAGATTCCTGGTGGAAGTTCTACGACGCTACGTTTGTGCA--TC 2429 Query 1343 CAGAGTTTAACCATCGCATGATATACGCTGACACGGCCATGAAAACCGGAGAGATGAACG 1402 | || | | | | ||||| || ||||| || || || | || || || || ||| | Sbjct 2428 CCGAATATGAGTACCGCATTATTTACGCCGATACCGCGCTCAAGACTGGGCAGCAGAATG 2369 Query 1403 ACTATTCAGTGCTACAATGCTGGGG----TAAGTCGGGTGACA-GCATCTATCTGATTGA 1457 |||| ||| | || |||||||| ||| ||| || || |||||| | || Sbjct 2368 ACTACAGTGTGTTTCAGTGCTGGGGCTTCAAAGATGGG---CATGC--CTATCTACTGGA 2314 Query 1458 CCAGGTACGCGGCAAGTGGGAAGCCCC 1484 |||| | ||||||||||||||||| || Sbjct 2313 CCAGCTGCGCGGCAAGTGGGAAGCGCC 2287 >seq79846 Length=1460 Score = 80.6 bits (88), Expect = 6e-11 Identities = 145/204 (71%), Gaps = 11/204 (5%) Strand=Plus/Plus Query 531 CATGTTTAGAGCCGTCAAAGGCTCTGAGCTTATCGATAACTGGCACCA---GAAAGCGAT 587 |||||| | ||| ||| |||| ||| || | || ||||||||||| |||| || Sbjct 2 CATGTTCAAGGCCCGCAAGGGCTTTGACTTTGTGGAGAACTGGCACCATGCGAAA---AT 58 Query 588 ATGTGACGCACTAGAGCGCGTGGTT-ATTGGCGACTGCAAACGGCTAATCATTAACGTGC 646 || || || || |||||| || || ||||| | || || |||||||||| | | Sbjct 59 CTGCGAGGCGCTGGAGCGC-TGCTTCATTGGTCAGCATAAGCGATTAATCATTAATATCC 117 Query 647 CGCCGCGCTCAGGCAAA-ACCGAACTGGCGGTTAAAAACTTTATGGCGTGGGGTATGGGT 705 | ||||||| | |||| ||||| ||||| ||| ||||||||||| ||| | || || Sbjct 118 C-CCGCGCT-ACTCAAAGACCGAGCTGGCTGTTGTGAACTTTATGGCCTGGTGCATCGGC 175 Query 706 AACTTTCCTGATTCGGAGTTTATC 729 |||| ||| || | ||||| ||| Sbjct 176 AACTATCCCGACTGCGAGTTCATC 199 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 110980013121000