Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20arachidis_20[genbank_20GCA_5F001013415.1_202015-05-26] 130,300 sequences; 87,617,276 total letters Query= NC_025442.1 Length=59578 Score E Sequences producing significant alignments: (Bits) Value seq40328 205 4e-48 seq60383 174 6e-39 seq90894 132 2e-26 seq98424 114 5e-21 seq76547 113 2e-20 seq129722 82.4 3e-11 >seq40328 Length=627 Score = 205 bits (226), Expect = 4e-48 Identities = 397/581 (68%), Gaps = 4/581 (1%) Strand=Plus/Plus Query 42537 TTCCCGTAATGCGGCGGGATGTTGAGTTTGAACGGCATGGCGTCCCAATAGTCGTTCACG 42596 || |||||||| | ||||| || |||||||| ||||| || |||||| | || || || Sbjct 33 TTTCCGTAATGAGAGGGGATATTCAGTTTGAATGGCATTGCATCCCAAAAATCATTTACA 92 Query 42597 TCCTGCTTATCGAAACTTCCCCAATGGCAAAGGGGATACACCAGATTAAATTTCTTGGCC 42656 ||||||||||| ||| ||||| || || | ||||| |||| || || ||| | Sbjct 93 TCCTGCTTATCAAAAGAACCCCAGTGACACAATGGATATACCAAGTTGTATCGCTTAGTG 152 Query 42657 GACGCCTTATCCGGGTTAGCCCGCTCCGGCTCGTCAGATCGCATTCCAATGGCCGTCTTC 42716 |||||||||||| || ||||| |||||||||| ||||| || || || || || Sbjct 153 GACGCCTTATCCATTGCTGCGCGCTCGGGCTCGTCAGCGCGCATGCCTATTGCGGTTTTG 212 Query 42717 GCACTCCACCCACGGCGCGCCAGTCCGTTGCTGCGCATCCAGTGGCGGATCGTCTGCGTT 42776 ||| ||| ||| | | || || ||| |||||||| | ||| || || || Sbjct 213 GCAGACCAGCCATGCCTGGCTAGGTTGTTAGCCCGCATCCATGATCTGATTGTTTGAGTC 272 Query 42777 TTCAGATAGTCGCTGCACTTCTGGCGCGATATGTTCGGGATGCCCTCGACGCTGATCAGG 42836 || | ||| || ||||| ||||| || |||| ||| || || || ||||| || || || Sbjct 273 TTTAAATAATCACTGCATTTCTGACGGGATACGTTAGGTATTCCTTCGACACTTAT-AGT 331 Query 42837 CTTTCAAACGGTTCGCCCTTGCGCGCGGCCGTCTCGAAACTGACAACCCGGTGGCGCATC 42896 |||||| || ||||| || | || || || || || |||| | ||| ||| Sbjct 332 TGTTCAAATGGCTCGCCGTTCCTCGATGCTGTTTC-AATGTGACTATTTTGTGTGACATA 390 Query 42897 CCGACGCCGTGTTCCGGACTGGCGTAGCCTTCCAGCCAAACCAGATTCAGGCCGAAGTGT 42956 || || ||||| || || || | |||||| |||||||||||||| ||||| || || Sbjct 391 CCAACACCGTGCTCGGGGCTTGTTACGCCTTCAAGCCAAACCAGATTAAGGCCAAAAAGT 450 Query 42957 TTATCCACCTTGTCGGCGAAGATCAGTGTTTCTTCGTGCTCCCGGCCAGTATTGGCGAAC 43016 ||||| ||||| || || || || | ||||| || || ||||| || || || || Sbjct 451 TTATCGACCTTATCAGC-AAAATTAAAGTTTCGGGATGTTCGCGGCCCGTGTTCGC-AAA 508 Query 43017 ACGAAACGCAGGTCATATTTGTGGCCGTAGTTCTCGATCAGGTATGCACAAAGAAAGCCG 43076 || || | | ||| || | |||||| | | ||| | | || || || | Sbjct 509 ACAAAGTGAAAGTCGTAAGCATCCGAGTAGTTTTGCAAAAGGAAATCGCACAGTAACGCC 568 Query 43077 GACGACTGGCCGCCGGAAAAGCTGACGACAAGCGGCTCTTT 43117 || ||||| || || ||||| ||||| || | ||||| || Sbjct 569 GATGACTGACCTCCTGAAAAACTGACAACCATTGGCTCCTT 609 >seq60383 Length=344 Score = 174 bits (192), Expect = 6e-39 Identities = 200/266 (75%), Gaps = 6/266 (2%) Strand=Plus/Plus Query 17226 CCCGCGTTGCGCCGTTCGTTGCACCTAACGTACAGGGCCGCGTGATCAAAGAAAGCGGCT 17285 ||||||| || || | ||| || || ||||| |||||||||| ||||||||| |||| Sbjct 1 CCCGCGTAGCACCTTACGTGGCGCCGAACGTCGAGGGCCGCGTTATCAAAGAAGAAGGCT 60 Query 17286 ACAACACGAAGACTTTTAAACCAGCCTACGTGAAGCCGAAACACGTCATCGACCCTAACA 17345 | | ||| | || || || || ||||| || || || ||||| ||||| || ||| Sbjct 61 GGACCGCGATGCGATTCAAGCCTGCTTACGTTAAACCTAAGCACGTTATCGATCCAAACC 120 Query 17346 TGATCATCCCGCGTCAGCCGGGTGAAG--CGTTGGGTACGGGTACCCTGTCTATCGCGCA 17403 |||| ||||| ||||| || |||| ||| || ||||| |||||| | | || Sbjct 121 TGATTATCCCTGTGCAGCCAGGCGAAGACCGTAC---ACTGGTACGCTGTCTCTGTCTCA 177 Query 17404 GCGCCGCGACCGTGTCATCGCATATCTGCTGATGAAACACCGCGCCATGCACGAAAATAC 17463 |||||| |||||||| |||||||| ||||| ||||| ||||| || |||||||||| || Sbjct 178 GCGCCGTGACCGTGTTATCGCATACCTGCTTATGAAGCACCGTGCGATGCACGAAAC-AC 236 Query 17464 GTGGGAATGGATGGCGGCGCAGGCTG 17489 |||||||| | | |||||||||||| Sbjct 237 ATGGGAATGCAGGACGGCGCAGGCTG 262 >seq90894 Length=384 Score = 132 bits (146), Expect = 2e-26 Identities = 197/277 (71%), Gaps = 7/277 (3%) Strand=Plus/Plus Query 36632 CCGTTCGAACGTGACGCTGCCGAACAATAACCAGATCTTCGCCGTGTCCGTCATCGCGTA 36691 |||||||||| | ||||||| | | |||||||||| ||| ||||| |||||||| || Sbjct 3 CCGTTCGAACACGGCGCTGCCAACGCAAAACCAGATCTACGCGGTGTCAGTCATCGCCTA 62 Query 36692 TGCACGCAAAGGCGACCTTGATGATCGTAAACTCGGGCTGGTGGTCAATACGGAAGGCGG 36751 ||||||||||| |||||||| | ||| |||||| ||| || || | || || || Sbjct 63 CGCACGCAAAGGTGACCTTGACCAGCGTTCACTCGGCCTGCTGACGAAGATTGACGGTGG 122 Query 36752 AACGCCGACTGAAATTCAGGTGCCGCTTACCGAATCGTACAAGTATTATCAGGCATCGTT 36811 || |||||| | ||| || |||| || || || | | |||||| ||||| ||| Sbjct 123 CGCGGAGACTGAGGTACAGCTGGCGCTGACGGAGTCTTTCGCGTATTACCAGGCGACGTA 182 Query 36812 CGAGCAAGCGCCGGGCGGAAGTGAC-TGGAACCAGAACAACGTCGAATCTTTGCAATTCG 36870 | | | || || ||| | | | | |||| | ||||||||| || || |||| |||| Sbjct 183 TGCGAAGGCACCAGGC-AACGCGGCATGGACACCGAACAACGTTGAGTCCCTGCAGTTCG 241 Query 36871 GCATCATCACGCGATAAGGGAGGGACACACTATGCCT 36907 ||||| ||| || ||| |||| ||||||| || Sbjct 242 GCATCCGCACCCGTTAA-----GGACGCACTATGGCT 273 >seq98424 Length=301 Score = 114 bits (126), Expect = 5e-21 Identities = 208/296 (70%), Gaps = 10/296 (3%) Strand=Plus/Plus Query 28509 TTCGCAGGCGGCTTCATCGAGTGGATAGATCCGGTGTACGGCGTGGAACGTCGCGGCATC 28568 ||| | ||||| |||||||| |||||||||||| | ||| |||||||||| ||| Sbjct 3 TTCACGGGCGGTTTCATCGAATGGATAGATCCGCAGCGCGGTACTGAACGTCGCGCCATT 62 Query 28569 GAAACCCATACCGGGAATACCATTACCATCTTCGGTACCGTAGACGGCTTGGCCGGGGGC 28628 || || || |||| || | | | | ||||| || ||| ||||||| ||| Sbjct 63 GAGACGCACACCGACAACA-CGCTGGTGTTTTCGGCGTGGTCAGCGGACTGGCCGGTGGC 121 Query 28629 TACATCCTCAAGACTTACCCGGGATGCCCGCGTAC--CAG-TGCG-GCCTGTGATACCAT 28684 || | ||| ||| || || |||||||| || ||| |||| ||| | | | | Sbjct 122 ATGGTCATTAAGGTTTATCCTGGTTGCCCGCGCACGTCAGCTGCGTGCCAGAG---TCGT 178 Query 28685 CTTCAACAATCTGGCTAACTTCGGCGGAATCCCGTCGCTGCCAGACCGTTCCCCGTTCGA 28744 || ||||| |||| || | ||||| ||| || |||| |||||| ||||| || Sbjct 179 -TTTAACAACCTGGACAATTATGGCGGCATCATCTCAATGCCGTCCCGTTCGCCGTTTGA 237 Query 28745 CGGCAACCCAATCTTTTAAGGAGAATCGCTATGTGGTGGGCGTTAGCTATGCTGGT 28800 |||||| ||| |||| ||||| ||| |||||||||||||| ||||| |||||||| Sbjct 238 CGGCAATCCAGTCTTCTAAGGGGAA-AGCTATGTGGTGGGCATTAGCCATGCTGGT 292 >seq76547 Length=445 Score = 113 bits (124), Expect = 2e-20 Identities = 242/352 (69%), Gaps = 20/352 (6%) Strand=Plus/Minus Query 15474 ATGCGCGAAAACCTGTGTGCAGCGTATGGCGTTGGCC-GACCATCTGCGGACAAACCCTT 15532 |||||| ||| || || | | ||||||||||||| | | ||| ||| |||||||| || Sbjct 350 ATGCGCAAAACGCTCTGCGAAACGTATGGCGTTGGGCAGGCCAG-TGCAGACAAACCTTT 292 Query 15533 CGCCTTTTCG--AACGGCCTCGCCATCATCCCGATCCACGGCACCCTGATTAACCGTTAT 15590 || ||||| ||||| ||||||||| ||||| ||||| | |||||||||||| || Sbjct 291 TGC--TTTCGTTAACGGTACCGCCATCATTCCGATTCACGGTAGCCTGATTAACCGCTAC 234 Query 15591 GGCGGGTATTACTACGGCTACGTGACGGGCTACAATTTTATCCGCAGTCAG--CGTAAT- 15647 || || ||||| | || ||||| || || || || || ||||| ||||| | | | Sbjct 233 GGTGGCTATTATTTTGGGTACGTAACCGGATATAACTTCATCCGTCGTCAGGCTGCACTG 174 Query 15648 GCAGCGCTGGCCGACCCGGATGTAGAGGCGATTATCTACGACGTCAACTCGAACGGCGGG 15707 || || ||| ||| ||||| ||| ||||| | || || ||| || || || Sbjct 173 GCGGCAATGGACGA---TGATGTCGAGCGTATTATTTTTGATGTGAACAGTAATGGTGGT 117 Query 15708 GAAGCCGCAGGTTGTTTCGAG-TTGTCTCAGGAAATGTTTGATACACGCGGCGAGAAACC 15766 | || | |||||||| ||| ||| | || ||| | | | ||| || || Sbjct 116 CAGGCATCCGGTTGTTTTGAGCTTGCCGCA-GAACT------CGCCAACCTCGAAAAGCC 64 Query 15767 TTCGCTGGCGGTTGTCGATTCAAACTGCTATTCTGCGGCATATGCGTTGGCG 15818 || ||||||| || ||| | ||||| ||||| || ||||| ||| || || Sbjct 63 AACGATGGCGGTCGTGGATGCGAACTGTTATTCAGCAGCATACGCGCTGTCG 12 >seq129722 Length=886 Score = 82.4 bits (90), Expect = 3e-11 Identities = 72/90 (80%), Gaps = 0/90 (0%) Strand=Plus/Plus Query 20692 AAGAACTACTACTTCCCGAAAGTGTCTATCGCGCCAGACGGCGACTACGCACTGAAAGGC 20751 ||| |||||| ||||||||||||| | | ||| || |||||||| || ||||| || Sbjct 7 AAGGACTACTTCTTCCCGAAAGTGGCGCTGCAGCCGGATGGCGACTATGCGCTGAAGGGT 66 Query 20752 GACGACTGGCAGGTCATGTCCTTCACCTTC 20781 || ||||||||||| ||||| ||||| ||| Sbjct 67 GATGACTGGCAGGTTATGTCGTTCACGTTC 96 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 190233193644000