Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20arachidis_20[genbank_20GCA_5F001013415.1_202015-05-26] 130,300 sequences; 87,617,276 total letters Query= NC_025829.1 Length=164999 Score E Sequences producing significant alignments: (Bits) Value seq33108 181 1e-40 seq31280 113 5e-20 seq34305 100 3e-16 seq49234 89.7 5e-13 >seq33108 Length=3479 Score = 181 bits (200), Expect = 1e-40 Identities = 150/183 (82%), Gaps = 0/183 (0%) Strand=Plus/Minus Query 65097 TTACAAGCTCTCAGTAAAGGTACGAGCGATAACGTCGCGCTGCTGTTCCGGAGTCAGAGA 65156 ||| || || || ||||||||||| || || ||||| ||||| ||||| || ||||| || Sbjct 2968 TTATAAACTTTCCGTAAAGGTACGGGCAATGACGTCACGCTGTTGTTCAGGCGTCAGCGA 2909 Query 65157 GTTAAAGCGAACTGCATAACCGGATACACGGATGGTCAGCTGCGGATATTTTTCCGGATG 65216 |||||||| || ||||| ||||| ||||| ||||||||||||||||| || || ||||| Sbjct 2908 ATTAAAGCGCACGGCATACCCGGAAACACGAATGGTCAGCTGCGGATACTTCTCAGGATG 2849 Query 65217 CTTAACTGCATCTTCCAGAGTTTCACGACGCAGAACGTTAACGTTCAGGTGTTGACCACC 65276 || || || |||||||| |||||||| ||||| ||||||||||| | ||| || || || Sbjct 2848 TTTCACGGCGTCTTCCAGCGTTTCACGGCGCAGGACGTTAACGTTTAAGTGCTGCCCGCC 2789 Query 65277 TTC 65279 ||| Sbjct 2788 TTC 2786 >seq31280 Length=10079 Score = 113 bits (124), Expect = 5e-20 Identities = 201/291 (69%), Gaps = 2/291 (1%) Strand=Plus/Plus Query 143815 TTCAGTTGAACGCCATAATCCATATGACGGATACGGTTTTCTTCTACACCTTTGTTATTT 143874 || || || || || || ||||| ||||| | ||||| |||| ||||| ||| ||| Sbjct 1342 TTGAGCTGCACACCGTAGTCCATGTGACGTACGCGGTTACCTTCCACACCACGGTTGTTT 1401 Query 143875 TTCAAAACGAGAAGATTTTCAACTTCCAAATGCCAAATAGGATAATA-AGCAGTAGCAGC 143933 |||| || | || |||| ||||||| |||||| || ||||| | ||| || || || Sbjct 1402 TTCAGGACTAACAGGCTTTCTACTTCCAGATGCCACATCGGATAGAACAGC-GTCGCTGC 1460 Query 143934 GCCGCCACGAATTCCACCCTGTGAACATGATTTAACTGCAGTCTGAAAATGTTTCCAAAA 143993 ||||||||| | || ||||| ||||| ||||| || || ||||| || || || | || Sbjct 1461 GCCGCCACGGACGCCGCCCTGCGAACAGGATTTCACCGCTGTCTGGAAGTGCTTGTAGAA 1520 Query 143994 AGGAATAACACCAGTATGACGCACTTCACCCATTCCAATCTTAGAACCTTCGGCACGAAT 144053 || ||| ||| ||||| ||||||| | |||| || || || || Sbjct 1521 CGGGATACAACCGGTATGGAAAGCTTCACCGCCGCGAATCGGGCTGCCCAGCGCGCGGAT 1580 Query 144054 CATACCAACGTTAATACCAATTCCAGCGCGTTTGGAGATATATTCAACAAT 144104 ||| ||||||||||||| || ||||||| || | |||| ||||| Sbjct 1581 ACGACCCGCGTTAATACCAATACCTGCGCGTTGTGAAACGTATTTCACAAT 1631 >seq34305 Length=2218 Score = 100 bits (110), Expect = 3e-16 Identities = 126/173 (73%), Gaps = 0/173 (0%) Strand=Plus/Plus Query 65110 GTAAAGGTACGAGCGATAACGTCGCGCTGCTGTTCCGGAGTCAGAGAGTTAAAGCGAACT 65169 ||||||||||| | || ||||| ||||||| || || || |||||||||||||| Sbjct 599 GTAAAGGTACGGGTAATCACGTCCTGCTGCTGCTCTTTGGTGAGCGAGTTAAAGCGAACG 658 Query 65170 GCATAACCGGATACACGGATGGTCAGCTGCGGATATTTTTCCGGATGCTTAACTGCATCT 65229 ||||| || || || |||||||| | ||| |||||||| || || | | | ||| || Sbjct 659 GCATAGCCCGAAACGCGGATGGTTAACTGAGGATATTTCTCAGGGTTATCCATTGCGTCC 718 Query 65230 TCCAGAGTTTCACGACGCAGAACGTTAACGTTCAGGTGTTGACCACCTTCAAT 65282 || |||| || || |||||||| ||||| || || || |||||||| Sbjct 719 ATCAACATTTCCCGGTTCATCACGTTAACATTCAGATGCTGGCCGCCTTCAAT 771 >seq49234 Length=879 Score = 89.7 bits (98), Expect = 5e-13 Identities = 203/300 (68%), Gaps = 4/300 (1%) Strand=Plus/Plus Query 67087 ATTCTGCTGGAATATCGCTGATGTCAGGAACTTCAGTATCTTTTATACTAAACCCACGTT 67146 || |||||||||| || ||||| || |||||||| | || ||| ||||| Sbjct 254 ATGCTGCTGGAATGTCTGATATGTCGTTAAATTCAGTATTGGTAATCTTAATACCACGAC 313 Query 67147 TTAAGCATTCCGTTA-TAATGTCTGATTGACGCTTTCGCAAAAATTCTAACTTATCGTAA 67205 | |||||| | | |||| |||| || ||| | ||| || ||| |||| || Sbjct 314 GAAGGCATTCATTAACTAATTGAACATTGGCGTTTT-GTAAATATAATAATTTATTATAG 372 Query 67206 AAGAACGTGACATGACCAGAACCTAAAATAAACTCGGAAGATATTTTAAAATCTTTAACC 67265 || || || |||||||| | ||||||| | | | | ||||||||||| || | Sbjct 373 AA-AATGTAACATGACCTGTACCTAAATGTAGGTAGTACTG-ATTTTAAAATCATTGATT 430 Query 67266 CGCTTACCATTTGCAACATGTTTACGAACTATACCAAAAACACGCGGCAGTTCACGGTAT 67325 || |||||| | || || |||||||| ||| || ||||| |||| |||||||||| Sbjct 431 CGTTTACCAGCTTGTACGTGCTTACGAACAGCACCGAATACACGTGGCAATTCACGGTAT 490 Query 67326 TCTGCGATTAAATGTTGATCAGCAAGTTCAGATACTAAAGTCAAATTAATACGAGTCATT 67385 || || || | |||||| ||||| | ||| |||| | ||| ||||| |||||| Sbjct 491 TCAGCCATAAGATGTTGGTCAGCTAATTCTTGTACTGGTACGAGATTGATACGGGTCATT 550 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 527009033692000