Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20arachidis_20[genbank_20GCA_5F001013415.1_202015-05-26] 130,300 sequences; 87,617,276 total letters Query= NC_026014.1 Length=35814 Score E Sequences producing significant alignments: (Bits) Value seq61333 158 3e-34 seq41978 140 7e-29 seq20954 93.3 1e-14 seq70179 89.7 1e-13 seq42962 87.8 4e-13 seq42791 82.4 2e-11 seq60962 80.6 6e-11 >seq61333 Length=826 Score = 158 bits (174), Expect = 3e-34 Identities = 190/257 (74%), Gaps = 1/257 (0%) Strand=Plus/Plus Query 27139 GGTGACACGCTGGTTGTCTGGAAACTGGATCGCCTCGGGCGAAGCATGAAACATCTGATT 27198 || || || || || || ||||| |||||||| || || || |||||| |||||| | Sbjct 54 GGCGATACCCTTGTGGTGTGGAAGCTGGATCGGCTTGGCCGCAGCATGCGTCATCTGGTC 113 Query 27199 TCTCTCGTCGGGGAACTACGGGAGCGAGGGATTAATTTTCGCAGTCTGACCGACAGCATA 27258 ||| | ||| || || || || || | ||||| || || ||||| |||||||| Sbjct 114 ATGCTCACTGAGGAGCTGCGTGAACGCGGAGTCAATTTCCGTAGCCTGACAGACAGCATC 173 Query 27259 GATACATCTTCTCCAATGGGGCGTTTTTTCTTCCACGTGATGGGTGCCCTGGCTGAAATG 27318 ||||| | || ||||||||||||||||| |||||||||||||| ||||| || ||| Sbjct 174 GATACCAGCACGCCGATGGGGCGTTTTTTCTTTCACGTGATGGGTGCGCTGGCGGAGATG 233 Query 27319 GAACGTGAATTAATTGTTGAACGTACACTGGCCGGACTGGCAGCAGCGCGCGCACGGGGG 27378 ||||| |||||||| |||||||| |||| || || || | || ||||| | | ||| Sbjct 234 GAACGCGAATTAATCGTTGAACGCACACGAGCAGGGCTCACCGCTGCGCGTG-AAAAGGG 292 Query 27379 CGCACAGGCGGACGTCG 27395 |||| ||||| || || Sbjct 293 CGCATCGGCGGCCGACG 309 >seq41978 Length=891 Score = 140 bits (154), Expect = 7e-29 Identities = 169/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 27139 GGTGACACGCTGGTTGTCTGGAAACTGGATCGCCTCGGGCGAAGCATGAAACATCTGATT 27198 || || || ||||| || ||||| |||||||| || || || |||||| |||||| | Sbjct 838 GGCGATACTCTGGTGGTGTGGAAGCTGGATCGGCTTGGCCGCAGCATGCGTCATCTGGTC 779 Query 27199 TCTCTCGTCGGGGAACTACGGGAGCGAGGGATTAATTTTCGCAGTCTGACCGACAGCATA 27258 ||| | ||| || || || || || | ||||| || || ||||| |||||||| Sbjct 778 ATGCTCACTGAGGAGCTGCGTGAACGTGGAGTCAATTTCCGTAGCCTGACGGACAGCATC 719 Query 27259 GATACATCTTCTCCAATGGGGCGTTTTTTCTTCCACGTGATGGGTGCCCTGGCTGAAATG 27318 || || | || ||||| ||||||||||| || |||||||| |||||||| |||||| Sbjct 718 GACACCAGCACGCCGATGGGACGTTTTTTCTTTCATGTGATGGGCGCCCTGGCGGAAATG 659 Query 27319 GAACGTGAATTAATTGTTGAACGTACACTGGCCGGACTGGCAGCAGCGCG 27368 || |||||||| || |||||||| || | || || || | || ||||| Sbjct 658 GAGCGTGAATTGATCGTTGAACGCACGCGAGCGGGCCTCTCCGCTGCGCG 609 >seq20954 Length=3811 Score = 93.3 bits (102), Expect = 1e-14 Identities = 166/239 (69%), Gaps = 4/239 (2%) Strand=Plus/Minus Query 13264 CTCGTTCCAGCGGTCGCCGTTCCAATAGACGTATGCCTCGTGCGTTTCGGTGGATGGCGT 13323 || ||| |||| |||||| |||| || ||| |||||||| | || | ||||| Sbjct 2471 CTTGTTGAAGCGCTCGCCGGTCCAGAAGGTGTAGGCCTCGTGGGCCATGGAGCTCGGCGT 2412 Query 13324 GGAGAAGTAGGTGCGCCGCAGT-CCGC-TGAGGGTTGCCATAGCGCCAGCCACCTTGCGC 13381 |||||||||||||| || || | || | | | ||||| ||| ||||||||| | Sbjct 2411 CGAGAAGTAGGTGCG--GCGGTACTGCTTCTGCATGGCCATGCCGCTGGCCACCTTGTTC 2354 Query 13382 AGTTCAGCAAAGCGACTGACCCAGAAAAATTCATCAAAATAAAAATTGCCTGTGTAGGAC 13441 || || | ||||| | |||||| ||||| || || || || ||||| |||| | Sbjct 2353 AGCTCCTCGAAGCGGAAGGTCCAGAAGAATTCGTCGAAGTAGAAGTTGCCGTGGTAGCCC 2294 Query 13442 TGTGCCGTCGCAGCAGAAGTACCGAGAAAATGCAGTTCTGCGCCGTTGGAGAGGATGAT 13500 || || || ||| ||||| || || ||||| || |||||||||| |||||||| Sbjct 2293 TGGGCGGTGCGGGCATTGGTACCTAGGAAGTGCAGCTCGGCGCCGTTGGCCAGGATGAT 2235 >seq70179 Length=320 Score = 89.7 bits (98), Expect = 1e-13 Identities = 124/174 (71%), Gaps = 0/174 (0%) Strand=Plus/Plus Query 138 AGGATTAAAGCGCACAGCATCCTGTAGATAATCCGGTGCAAAATGGGCATAAGTCATCGT 197 ||||||||| | || ||| ||||| ||| || |||||||| || ||| ||| || Sbjct 119 AGGATTAAACAAAATTGCTTCCGATAGATGATCGGGCGCAAAATGTGCGTAACGCATTGT 178 Query 198 CTGCTGAATAGTGCTATGTCCAAGTATTCTCTGCAAAGTGATGATATTCCCACCATTAAT 257 | ||| |||| |||||||||||||| | | | |||||| |||||||| || Sbjct 179 GACTTTGATATCTGTATGCCCAAGTATTCTCTGAAGAACAAGGATATTTCCACCATTCAT 238 Query 258 CATGAAGTGAGTGGCAAAGGTATGCCGTAAAACATGTATCGACTGCCCTTCAGG 311 ||| || |||| ||||| || |||||||| ||||| | |||||| |||| Sbjct 239 CATAAAATGAGATGCAAAAGTGTGCCGTAATACATGCGTAAGCTGCCCAGCAGG 292 >seq42962 Length=350 Score = 87.8 bits (96), Expect = 4e-13 Identities = 138/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 22143 ACCTGCCCGGTGCACCTGCTGCCTTATCTCGCCTGGGCGTTTTCCGTTGACCGCTGGGAT 22202 ||||||||||| |||||||| ||||| || ||| || ||| ||||| ||||||||| Sbjct 346 ACCTGCCCGGTTTCGCTGCTGCCCTATCTTGCGTGGTCGCGTTCGGTTGATCGCTGGGAT 287 Query 22203 CGCAACTGGCCGGAAGAGACAAAGCGACAGGTTATTCGTGATGCATGGCTGATACACCGA 22262 | |||| |||| | | ||||| ||||| | ||||| | || || || Sbjct 286 GAGAGCTGGACGGAGGCGGTTAAGCGGCAGGTGGTGAAGGATGCGTTTTACATCCATCGC 227 Query 22263 CACAAAGGGACCATCAGCGCACTGCGCCGGGCCATTGAGCCGCTGGGATACCTCATTCGC 22322 | ||||| ||||||||||| | || || | | |||||| | || | ||| || ||| Sbjct 226 CGTAAAGGAACCATCAGCGCGATCCGGCGCGTGGTGGAGCCGTTCGGCTTCCTGATCCGC 167 Query 22323 GTGTCTGAGTGGTGGGAG 22340 || |||||||||| || Sbjct 166 GTCATTGAGTGGTGGCAG 149 >seq42791 Length=297 Score = 82.4 bits (90), Expect = 2e-11 Identities = 140/200 (70%), Gaps = 10/200 (5%) Strand=Plus/Plus Query 22143 ACCTGCCCGGTGCACCTGCTGCCTTATCTCGCCTGGGCGTTTTCCGTTGACCGCTGGGAT 22202 |||||||||| || | |||||||||||||||||| | || || |||||||||||||| Sbjct 81 ACCTGCCCGGCGCGGTTTCTGCCTTATCTCGCCTGGTCATTCTCGGTTGACCGCTGGGAC 140 Query 22203 CGCAACTGGCCGG-AAGAGACAAAGCGACAGGTTATTCGTGATGCATGGCTGATACACCG 22261 |||| ||| ||| | | ||||| | | | |||||| ||| | |||| | Sbjct 141 GAGGCCTGGGCGGAAAGCGTC-AAGCGGCGCG----TGGTGATGGATGCGTTTTACATCC 195 Query 22262 A----CACAAAGGGACCATCAGCGCACTGCGCCGGGCCATTGAGCCGCTGGGATACCTCA 22317 | |||||||| ||||||||||| |||| || | | ||||| | || | || | Sbjct 196 ATCAGCACAAAGGCACCATCAGCGCCGTGCGTCGCGTGGTGGAGCCCTTCGGGTTTCTTA 255 Query 22318 TTCGCGTGTCTGAGTGGTGG 22337 | ||||| ||||||||| Sbjct 256 TCCGCGTACTGGAGTGGTGG 275 >seq60962 Length=2270 Score = 80.6 bits (88), Expect = 6e-11 Identities = 122/174 (70%), Gaps = 0/174 (0%) Strand=Plus/Minus Query 133 GCCACAGGATTAAAGCGCACAGCATCCTGTAGATAATCCGGTGCAAAATGGGCATAAGTC 192 |||| ||||||| |||||||||| || || || || |||||||| || ||| | Sbjct 2131 GCCAGTGGATTAAGTTTTACAGCATCCTCTAAATGTTCGGGCGCAAAATGCGCGTAACGC 2072 Query 193 ATCGTCTGCTGAATAGTGCTATGTCCAAGTATTCTCTGCAAAGTGATGATATTCCCACCA 252 || ||| | ||| | | || ||||| | | ||||||| | ||||| || || Sbjct 2071 ATTGTCATTTTAATGTCGGTGTGGCCAAGCACGCGCTGCAAAACTAAAATATTTCCGCCG 2012 Query 253 TTAATCATGAAGTGAGTGGCAAAGGTATGCCGTAAAACATGTATCGACTGCCCT 306 || ||||| |||||| | ||||||||||| || ||||| || | |||| ||| Sbjct 2011 TTCATCATAAAGTGACTTGCAAAGGTATGGCGCAAAACGTGAGTTAACTGGCCT 1958 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 114306058713600